Wall clock time and date at job start Tue Mar 31 2020 10:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00019 * 2 1 4 4 H 1.48498 * 109.47108 * 269.99781 * 3 2 1 5 5 H 1.48490 * 109.47066 * 30.00213 * 3 2 1 6 6 H 1.48505 * 109.46766 * 150.00053 * 3 2 1 7 7 C 1.37885 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99642 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99875 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47382 * 179.97438 * 9 7 2 11 11 O 1.42899 * 109.47262 * 59.99414 * 9 7 2 12 12 C 1.35527 * 116.99358 * 90.00360 * 11 9 7 13 13 N 1.32346 * 120.11633 * 359.72261 * 12 11 9 14 14 C 1.31766 * 120.32216 * 179.70756 * 13 12 11 15 15 N 1.31251 * 121.48953 * 0.60647 * 14 13 12 16 16 C 1.33828 * 121.87656 * 359.67859 * 15 14 13 17 17 C 1.37172 * 118.51510 * 0.02562 * 16 15 14 18 18 C 1.52076 * 115.79400 * 179.97438 * 17 16 15 19 19 S 1.83292 * 103.45729 * 342.60382 * 18 17 16 20 20 C 1.52161 * 125.79000 * 180.02562 * 16 15 14 21 21 C 1.50706 * 109.47197 * 299.99648 * 9 7 2 22 22 C 1.38234 * 120.00196 * 265.00460 * 21 9 7 23 23 C 1.38235 * 119.99814 * 179.97438 * 22 21 9 24 24 C 1.38230 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38243 * 120.00092 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99618 * 359.97438 * 25 24 23 27 27 H 0.97003 * 120.00205 * 359.97438 * 1 2 3 28 28 H 1.08012 * 119.25395 * 180.28089 * 14 13 12 29 29 H 1.08999 * 110.62557 * 101.09360 * 18 17 16 30 30 H 1.09001 * 110.62214 * 224.11446 * 18 17 16 31 31 H 1.08996 * 110.62169 * 315.90931 * 20 16 15 32 32 H 1.09005 * 110.61565 * 78.91077 * 20 16 15 33 33 H 1.08000 * 119.99516 * 0.24808 * 22 21 9 34 34 H 1.08000 * 119.99297 * 179.97438 * 23 22 21 35 35 H 1.08001 * 120.00350 * 179.97438 * 24 23 22 36 36 H 1.07999 * 120.00235 * 179.97438 * 25 24 23 37 37 H 1.08005 * 119.99804 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 1.9593 -3.3277 0.0005 11 8 0.4298 -2.5750 -1.1665 12 6 0.9821 -3.1308 -2.2722 13 7 2.2306 -3.5691 -2.2423 14 6 2.7698 -4.1153 -3.3133 15 7 2.0989 -4.2310 -4.4355 16 6 0.8345 -3.8078 -4.5498 17 6 0.2332 -3.2381 -3.4564 18 6 -1.2029 -2.7790 -3.6552 19 16 -1.3792 -2.7070 -5.4782 20 6 -0.0241 -3.8976 -5.8028 21 6 0.3841 -2.5787 1.2308 22 6 0.8467 -3.2253 2.3616 23 6 0.0517 -3.2978 3.4902 24 6 -1.2055 -2.7233 3.4881 25 6 -1.6677 -2.0757 2.3576 26 6 -0.8723 -2.0023 1.2294 27 1 -0.4850 0.8401 0.0004 28 1 3.7885 -4.4713 -3.2682 29 1 -1.8994 -3.5018 -3.2304 30 1 -1.3551 -1.7932 -3.2156 31 1 0.5469 -3.5985 -6.6817 32 1 -0.4196 -4.9060 -5.9256 33 1 1.8309 -3.6700 2.3648 34 1 0.4130 -3.8034 4.3735 35 1 -1.8268 -2.7803 4.3697 36 1 -2.6502 -1.6272 2.3558 37 1 -1.2336 -1.4967 0.3460 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233896263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:29 Heat of formation + Delta-G solvation = 49.621954 kcal Electronic energy + Delta-G solvation = -23576.164717 eV Core-core repulsion = 20217.513589 eV Total energy + Delta-G solvation = -3358.651128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80711 -38.57928 -37.18556 -34.68371 -33.45947 -32.04733 -30.63662 -29.78385 -28.99085 -27.28510 -26.71806 -23.61982 -22.61403 -22.10015 -21.43538 -20.30667 -18.12124 -17.55405 -16.54393 -16.05360 -15.63460 -15.60246 -14.98777 -14.63970 -14.36650 -14.21889 -13.96705 -13.54479 -13.46850 -13.24569 -13.01454 -12.74779 -12.45418 -11.93831 -11.87283 -11.79954 -11.65530 -11.10113 -10.85038 -10.68481 -10.60528 -10.41046 -10.21196 -9.80166 -9.55395 -9.32907 -8.98016 -8.84204 -8.23950 -7.90854 -7.71980 -7.64230 -6.19955 -4.52493 1.17518 1.61191 1.81280 2.18441 2.30974 2.47405 3.14017 3.21765 3.24641 3.75481 4.03687 4.13644 4.18876 4.50451 4.82031 4.86339 4.96226 5.10576 5.19153 5.30293 5.51333 5.57547 5.70367 5.71634 5.82634 5.92673 6.03973 6.20603 6.41869 6.56793 6.63135 6.74688 6.93056 7.14622 7.31710 7.39294 7.47240 7.65432 7.79110 7.84936 8.11002 8.17773 8.51496 8.64232 9.22873 10.64086 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.005148 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.562103 B = 5437.909954 C = 5934.530781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.079 3.921 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.070 0.930 9 C 0.239 3.761 10 H 0.057 0.943 11 O -0.271 6.271 12 C 0.420 3.580 13 N -0.563 5.563 14 C 0.338 3.662 15 N -0.559 5.559 16 C 0.176 3.824 17 C -0.236 4.236 18 C -0.001 4.001 19 S -0.263 6.263 20 C -0.019 4.019 21 C -0.049 4.049 22 C -0.122 4.122 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.151 4.151 26 C -0.049 4.049 27 H 0.267 0.733 28 H 0.197 0.803 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.900 -6.758 -4.273 8.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.127 4.127 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.563 4.563 8 H 0.088 0.912 9 C 0.186 3.814 10 H 0.075 0.925 11 O -0.171 6.171 12 C 0.229 3.771 13 N -0.295 5.295 14 C 0.049 3.951 15 N -0.281 5.281 16 C 0.036 3.964 17 C -0.243 4.243 18 C -0.150 4.150 19 S -0.036 6.036 20 C -0.167 4.167 21 C -0.050 4.050 22 C -0.141 4.141 23 C -0.166 4.166 24 C -0.160 4.160 25 C -0.169 4.169 26 C -0.068 4.068 27 H 0.077 0.923 28 H 0.213 0.787 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.249 -6.133 -4.828 8.123 hybrid contribution 0.754 0.795 1.094 1.548 sum -1.495 -5.339 -3.734 6.684 Atomic orbital electron populations 1.69782 1.05903 1.26725 1.46013 1.25095 0.94948 0.99704 0.92977 0.86486 0.80094 0.82527 0.78429 1.20330 1.20761 1.19528 1.21341 0.93435 0.89606 1.51931 0.91171 1.19095 0.87126 0.97588 0.77570 0.92504 1.86517 1.43069 1.69014 1.18497 1.20076 0.86457 0.83194 0.87405 1.68291 1.11245 1.17660 1.32282 1.24500 0.99232 0.89235 0.82127 1.67825 1.07241 1.24052 1.28956 1.21604 0.90625 0.91031 0.93136 1.20967 0.98070 1.10659 0.94651 1.22557 0.94016 1.06552 0.91838 1.87771 1.46895 1.59911 1.09033 1.22724 0.94801 1.01763 0.97446 1.19835 0.94415 0.95500 0.95222 1.20765 0.99091 1.00656 0.93549 1.20726 0.95277 1.02873 0.97688 1.20867 0.96379 1.00875 0.97886 1.21145 0.99704 1.01472 0.94597 1.21847 0.92813 0.92539 0.99561 0.92277 0.78699 0.87893 0.86131 0.86173 0.86850 0.87469 0.87716 0.88040 0.87814 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.31 8.52 55.43 0.47 -20.84 16 2 C 0.08 2.01 5.24 -17.82 -0.09 1.91 16 3 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.53 -13.45 8.89 -34.44 -0.31 -13.75 16 8 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.24 5.62 2.36 -29.04 -0.07 5.55 16 10 H 0.06 1.32 6.91 -51.93 -0.36 0.96 16 11 O -0.27 -6.22 8.12 -18.28 -0.15 -6.37 16 12 C 0.42 8.74 7.50 -16.47 -0.12 8.61 16 13 N -0.56 -11.15 8.77 -14.56 -0.13 -11.28 16 14 C 0.34 5.58 12.29 -92.64 -1.14 4.44 16 15 N -0.56 -9.22 10.41 -10.49 -0.11 -9.33 16 16 C 0.18 2.87 7.04 -81.39 -0.57 2.30 16 17 C -0.24 -4.26 5.96 -103.47 -0.62 -4.88 16 18 C 0.00 -0.01 7.14 36.69 0.26 0.25 16 19 S -0.26 -3.75 23.44 -107.50 -2.52 -6.27 16 20 C -0.02 -0.24 7.39 36.73 0.27 0.03 16 21 C -0.05 -1.11 4.80 -104.62 -0.50 -1.62 16 22 C -0.12 -2.50 9.68 -39.58 -0.38 -2.89 16 23 C -0.15 -2.72 10.05 -39.59 -0.40 -3.11 16 24 C -0.14 -2.59 10.05 -39.58 -0.40 -2.98 16 25 C -0.15 -2.97 10.05 -39.58 -0.40 -3.37 16 26 C -0.05 -1.09 7.45 -39.58 -0.29 -1.38 16 27 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 28 H 0.20 2.42 8.06 -52.48 -0.42 1.99 16 29 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 31 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.11 2.02 8.06 -52.49 -0.42 1.59 16 34 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.16 3.84 5.52 -52.48 -0.29 3.55 16 LS Contribution 327.43 15.07 4.93 4.93 Total: -1.00 -27.28 327.43 -11.28 -38.56 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.00 Total: 6.24 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -4.76 Total: -10.88 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.24 Total: -41.45 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.15 Total: -6.37 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -2.52 Total: -6.27 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.28 -11.28 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233896263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.179 kcal (2) G-P(sol) polarization free energy of solvation -27.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds