Wall clock time and date at job start Tue Mar 31 2020 10:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00019 * 2 1 4 4 H 1.48498 * 109.47108 * 269.99781 * 3 2 1 5 5 H 1.48490 * 109.47066 * 30.00213 * 3 2 1 6 6 H 1.48505 * 109.46766 * 150.00053 * 3 2 1 7 7 C 1.37885 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99642 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99875 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47382 * 179.97438 * 9 7 2 11 11 O 1.42899 * 109.47262 * 59.99414 * 9 7 2 12 12 C 1.35527 * 116.99358 * 90.00360 * 11 9 7 13 13 N 1.32346 * 120.11633 * 359.72261 * 12 11 9 14 14 C 1.31766 * 120.32216 * 179.70756 * 13 12 11 15 15 N 1.31251 * 121.48953 * 0.60647 * 14 13 12 16 16 C 1.33828 * 121.87656 * 359.67859 * 15 14 13 17 17 C 1.37172 * 118.51510 * 0.02562 * 16 15 14 18 18 C 1.52076 * 115.79400 * 179.97438 * 17 16 15 19 19 S 1.83292 * 103.45729 * 342.60382 * 18 17 16 20 20 C 1.52161 * 125.79000 * 180.02562 * 16 15 14 21 21 C 1.50706 * 109.47197 * 299.99648 * 9 7 2 22 22 C 1.38234 * 120.00196 * 265.00460 * 21 9 7 23 23 C 1.38235 * 119.99814 * 179.97438 * 22 21 9 24 24 C 1.38230 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38243 * 120.00092 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99618 * 359.97438 * 25 24 23 27 27 H 0.97003 * 120.00205 * 359.97438 * 1 2 3 28 28 H 1.08012 * 119.25395 * 180.28089 * 14 13 12 29 29 H 1.08999 * 110.62557 * 101.09360 * 18 17 16 30 30 H 1.09001 * 110.62214 * 224.11446 * 18 17 16 31 31 H 1.08996 * 110.62169 * 315.90931 * 20 16 15 32 32 H 1.09005 * 110.61565 * 78.91077 * 20 16 15 33 33 H 1.08000 * 119.99516 * 0.24808 * 22 21 9 34 34 H 1.08000 * 119.99297 * 179.97438 * 23 22 21 35 35 H 1.08001 * 120.00350 * 179.97438 * 24 23 22 36 36 H 1.07999 * 120.00235 * 179.97438 * 25 24 23 37 37 H 1.08005 * 119.99804 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 1.9593 -3.3277 0.0005 11 8 0.4298 -2.5750 -1.1665 12 6 0.9821 -3.1308 -2.2722 13 7 2.2306 -3.5691 -2.2423 14 6 2.7698 -4.1153 -3.3133 15 7 2.0989 -4.2310 -4.4355 16 6 0.8345 -3.8078 -4.5498 17 6 0.2332 -3.2381 -3.4564 18 6 -1.2029 -2.7790 -3.6552 19 16 -1.3792 -2.7070 -5.4782 20 6 -0.0241 -3.8976 -5.8028 21 6 0.3841 -2.5787 1.2308 22 6 0.8467 -3.2253 2.3616 23 6 0.0517 -3.2978 3.4902 24 6 -1.2055 -2.7233 3.4881 25 6 -1.6677 -2.0757 2.3576 26 6 -0.8723 -2.0023 1.2294 27 1 -0.4850 0.8401 0.0004 28 1 3.7885 -4.4713 -3.2682 29 1 -1.8994 -3.5018 -3.2304 30 1 -1.3551 -1.7932 -3.2156 31 1 0.5469 -3.5985 -6.6817 32 1 -0.4196 -4.9060 -5.9256 33 1 1.8309 -3.6700 2.3648 34 1 0.4130 -3.8034 4.3735 35 1 -1.8268 -2.7803 4.3697 36 1 -2.6502 -1.6272 2.3558 37 1 -1.2336 -1.4967 0.3460 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233896263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:29 Heat of formation + Delta-G solvation = 36.453606 kcal Electronic energy + Delta-G solvation = -23576.735740 eV Core-core repulsion = 20217.513589 eV Total energy + Delta-G solvation = -3359.222151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.21815 -40.16583 -38.74735 -36.01090 -35.20821 -33.57042 -32.25627 -31.34113 -30.19143 -28.93242 -28.17155 -25.31982 -23.98569 -23.57041 -22.95198 -21.90622 -19.69660 -18.98782 -18.19576 -17.45626 -17.11277 -17.03259 -16.65463 -16.01446 -15.80797 -15.69823 -15.46029 -15.03999 -14.91153 -14.54406 -14.44083 -14.14372 -13.99661 -13.57172 -13.45259 -13.27858 -13.06579 -12.90579 -12.54532 -12.30791 -12.02633 -11.83164 -11.75322 -11.34106 -11.24432 -10.84758 -10.82069 -10.29537 -9.75338 -9.47272 -9.27419 -8.85178 -8.05525 -6.46439 -0.16054 0.17525 0.64524 0.74480 0.92425 0.99073 1.32328 1.35580 1.43186 2.26808 2.30773 2.74675 2.79318 3.05365 3.20746 3.28925 3.51938 3.73295 4.00264 4.22068 4.25278 4.29179 4.34230 4.37604 4.47767 4.51629 4.61173 4.75149 4.81502 4.97750 5.13872 5.25299 5.38128 5.54656 5.62497 5.81565 5.90962 5.95570 6.06428 6.23049 6.40466 6.50821 6.80246 7.12603 7.30377 8.73815 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.005148 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.562103 B = 5437.909954 C = 5934.530781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.044 3.956 3 Si 0.945 3.055 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.054 0.946 9 C 0.247 3.753 10 H 0.046 0.954 11 O -0.288 6.288 12 C 0.390 3.610 13 N -0.588 5.588 14 C 0.335 3.665 15 N -0.553 5.553 16 C 0.180 3.820 17 C -0.252 4.252 18 C 0.000 4.000 19 S -0.256 6.256 20 C -0.009 4.009 21 C -0.076 4.076 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.136 4.136 25 C -0.157 4.157 26 C -0.068 4.068 27 H 0.265 0.735 28 H 0.234 0.766 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.210 -7.690 -4.373 9.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.161 4.161 3 Si 0.771 3.229 4 H -0.207 1.207 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.072 0.928 9 C 0.194 3.806 10 H 0.064 0.936 11 O -0.189 6.189 12 C 0.199 3.801 13 N -0.320 5.320 14 C 0.047 3.953 15 N -0.274 5.274 16 C 0.039 3.961 17 C -0.259 4.259 18 C -0.149 4.149 19 S -0.029 6.029 20 C -0.157 4.157 21 C -0.077 4.077 22 C -0.155 4.155 23 C -0.160 4.160 24 C -0.154 4.154 25 C -0.175 4.175 26 C -0.087 4.087 27 H 0.075 0.925 28 H 0.250 0.750 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.141 0.859 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.557 -7.079 -4.943 9.005 hybrid contribution 0.861 0.975 1.063 1.680 sum -1.696 -6.104 -3.880 7.429 Atomic orbital electron populations 1.69954 1.06263 1.26807 1.46109 1.25616 0.95732 1.01667 0.93070 0.85766 0.79168 0.80014 0.77983 1.20741 1.20179 1.19583 1.21425 0.92855 0.91163 1.53091 0.92807 1.18876 0.87258 0.96120 0.78387 0.93616 1.86441 1.43124 1.70261 1.19026 1.20446 0.87500 0.84427 0.87702 1.68270 1.11265 1.18465 1.33968 1.25285 1.00507 0.88167 0.81316 1.67962 1.07235 1.23629 1.28600 1.22190 0.90639 0.89441 0.93877 1.21217 0.99089 1.11355 0.94287 1.22454 0.93297 1.05556 0.93603 1.87748 1.47510 1.60841 1.06807 1.22935 0.93615 1.02984 0.96210 1.19954 0.94916 0.97163 0.95639 1.21003 0.99952 1.00772 0.93763 1.21148 0.94961 1.01963 0.97933 1.21292 0.96590 0.99098 0.98392 1.21399 1.00273 1.01550 0.94323 1.21677 0.93412 0.93631 0.99968 0.92493 0.75008 0.86762 0.88382 0.83965 0.83773 0.86716 0.84125 0.84223 0.85909 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.55 8.52 21.45 0.18 -44.37 16 2 C 0.04 2.31 5.24 84.66 0.44 2.76 16 3 Si 0.94 42.50 29.54 68.60 2.03 44.52 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.55 -29.27 8.89 25.60 0.23 -29.05 16 8 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 9 C 0.25 12.20 2.36 29.10 0.07 12.27 16 10 H 0.05 2.26 6.91 -2.39 -0.02 2.24 16 11 O -0.29 -13.94 8.12 -88.31 -0.72 -14.66 16 12 C 0.39 16.85 7.50 85.17 0.64 17.49 16 13 N -0.59 -23.89 8.77 -312.88 -2.75 -26.63 16 14 C 0.34 10.85 12.29 181.05 2.23 13.07 16 15 N -0.55 -17.41 10.41 -187.11 -1.95 -19.36 16 16 C 0.18 5.61 7.04 42.47 0.30 5.91 16 17 C -0.25 -9.23 5.96 -19.12 -0.11 -9.34 16 18 C 0.00 -0.01 7.14 71.68 0.51 0.51 16 19 S -0.26 -6.93 23.44 -56.49 -1.32 -8.26 16 20 C -0.01 -0.21 7.39 71.70 0.53 0.32 16 21 C -0.08 -3.56 4.80 -19.86 -0.10 -3.65 16 22 C -0.14 -5.58 9.68 22.27 0.22 -5.36 16 23 C -0.14 -4.90 10.05 22.27 0.22 -4.68 16 24 C -0.14 -4.58 10.05 22.27 0.22 -4.36 16 25 C -0.16 -6.06 10.05 22.27 0.22 -5.84 16 26 C -0.07 -3.10 7.45 22.27 0.17 -2.94 16 27 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 28 H 0.23 5.38 8.06 -2.90 -0.02 5.35 16 29 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 30 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 31 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.14 2.49 8.14 -2.38 -0.02 2.47 16 33 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 34 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 36 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.14 6.93 5.52 -2.91 -0.02 6.91 16 Total: -1.00 -60.96 327.43 2.36 -58.60 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 1.10 Total: 23.05 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 5.79 Total: -12.89 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -4.51 Total: -90.36 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.72 Total: -14.66 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: -6.93 SS G_CDS: -1.32 Total: -8.26 kcal Total: -60.96 2.36 -58.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233896263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.049 kcal (2) G-P(sol) polarization free energy of solvation -60.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds