Wall clock time and date at job start Tue Mar 31 2020 10:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 119.99936 * 2 1 4 4 H 1.48503 * 109.47112 * 94.42091 * 3 2 1 5 5 H 1.48503 * 109.47256 * 214.41965 * 3 2 1 6 6 H 1.48501 * 109.47661 * 334.41876 * 3 2 1 7 7 C 1.37872 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00284 * 5.95346 * 7 2 1 9 9 C 1.50705 * 119.99624 * 185.96184 * 7 2 1 10 10 H 1.09002 * 109.47279 * 4.67725 * 9 7 2 11 11 O 1.42902 * 109.47336 * 124.68069 * 9 7 2 12 12 C 1.35515 * 116.99945 * 269.99974 * 11 9 7 13 13 N 1.32353 * 120.11313 * 359.72471 * 12 11 9 14 14 C 1.31773 * 120.31794 * 179.74454 * 13 12 11 15 15 N 1.31254 * 121.48828 * 0.52048 * 14 13 12 16 16 C 1.33829 * 121.88078 * 359.75353 * 15 14 13 17 17 C 1.37170 * 118.51179 * 359.97438 * 16 15 14 18 18 C 1.52073 * 115.79242 * 180.02562 * 17 16 15 19 19 S 1.83291 * 103.45853 * 17.39633 * 18 17 16 20 20 C 1.52160 * 125.79152 * 179.97438 * 16 15 14 21 21 C 1.50706 * 109.46807 * 244.68094 * 9 7 2 22 22 C 1.38236 * 119.99813 * 278.61577 * 21 9 7 23 23 C 1.38232 * 119.99529 * 179.80990 * 22 21 9 24 24 C 1.38234 * 120.00121 * 0.40088 * 23 22 21 25 25 C 1.38232 * 120.00099 * 359.84911 * 24 23 22 26 26 C 1.38232 * 119.99989 * 359.96327 * 25 24 23 27 27 H 0.97006 * 120.00174 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.24962 * 180.26609 * 14 13 12 29 29 H 1.09001 * 110.62393 * 135.89173 * 18 17 16 30 30 H 1.09005 * 110.62488 * 258.90060 * 18 17 16 31 31 H 1.08996 * 110.62054 * 44.08318 * 20 16 15 32 32 H 1.09000 * 110.61675 * 281.07818 * 20 16 15 33 33 H 1.07994 * 120.00129 * 359.97438 * 22 21 9 34 34 H 1.08006 * 119.99692 * 180.23014 * 23 22 21 35 35 H 1.08003 * 119.99477 * 179.83656 * 24 23 22 36 36 H 1.07997 * 120.00146 * 179.97438 * 25 24 23 37 37 H 1.07998 * 120.00198 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5901 1.9924 1.3959 5 1 3.4968 1.4689 -0.7914 6 1 1.4030 2.6779 -0.6045 7 6 2.0044 -1.1941 -0.0005 8 1 1.4688 -2.1268 -0.0980 9 6 3.5054 -1.1977 0.1350 10 1 3.8573 -0.1801 0.3047 11 8 3.8819 -2.0224 1.2396 12 6 3.9800 -1.4218 2.4505 13 7 3.7369 -0.1264 2.5708 14 6 3.8261 0.4607 3.7472 15 7 4.1648 -0.2093 4.8238 16 6 4.4318 -1.5201 4.7858 17 6 4.3453 -2.1713 3.5816 18 6 4.6608 -3.6587 3.6095 19 16 4.5257 -4.0902 5.3858 20 6 4.8318 -2.3817 5.9745 21 6 4.1226 -1.7384 -1.1290 22 6 4.1991 -3.1037 -1.3316 23 6 4.7616 -3.5996 -2.4928 24 6 5.2552 -2.7304 -3.4477 25 6 5.1833 -1.3652 -3.2428 26 6 4.6172 -0.8692 -2.0833 27 1 -0.4851 0.8401 -0.0004 28 1 3.6198 1.5178 3.8264 29 1 3.9318 -4.2169 3.0222 30 1 5.6714 -3.8437 3.2452 31 1 4.2077 -2.1563 6.8392 32 1 5.8859 -2.2407 6.2133 33 1 3.8170 -3.7828 -0.5839 34 1 4.8181 -4.6662 -2.6528 35 1 5.6971 -3.1180 -4.3538 36 1 5.5692 -0.6862 -3.9886 37 1 4.5614 0.1973 -1.9230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233896265.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:31 Heat of formation + Delta-G solvation = 45.051820 kcal Electronic energy + Delta-G solvation = -23432.842080 eV Core-core repulsion = 20073.992776 eV Total energy + Delta-G solvation = -3358.849304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98244 -38.94975 -37.54040 -34.83423 -33.36321 -32.34514 -31.18161 -30.36158 -29.13186 -27.59429 -26.91666 -23.61164 -22.78112 -22.35087 -21.88402 -20.35562 -18.07580 -17.74207 -17.27109 -16.37530 -16.00113 -15.68517 -15.01776 -14.83691 -14.61584 -14.41428 -14.05864 -13.92806 -13.59196 -13.39836 -13.03442 -12.94186 -12.80789 -12.76221 -12.16940 -12.05812 -11.80584 -11.29310 -11.00836 -10.79154 -10.67089 -10.49392 -10.26948 -9.91128 -9.72913 -9.53842 -8.98327 -8.84345 -8.51293 -8.39702 -8.02351 -7.83476 -6.39713 -4.47446 1.04422 1.45585 1.68144 1.90148 1.93463 2.04470 3.17584 3.24404 3.29885 3.48693 3.90761 4.00823 4.21297 4.33284 4.41234 4.68249 4.88958 5.00145 5.10169 5.12130 5.32643 5.38561 5.41590 5.44108 5.55785 5.57082 5.81226 5.84188 6.05198 6.10555 6.29533 6.41488 6.51995 6.62292 6.96875 6.99271 7.17405 7.22851 7.25193 7.53972 7.79994 8.16570 8.39355 8.68221 9.20164 10.69957 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.012221 B = 0.005666 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.563036 B = 4940.895458 C = 6379.095633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.092 3.908 3 Si 0.883 3.117 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.292 1.292 7 C -0.527 4.527 8 H 0.082 0.918 9 C 0.208 3.792 10 H 0.069 0.931 11 O -0.301 6.301 12 C 0.423 3.577 13 N -0.557 5.557 14 C 0.344 3.656 15 N -0.552 5.552 16 C 0.180 3.820 17 C -0.237 4.237 18 C -0.004 4.004 19 S -0.256 6.256 20 C -0.019 4.019 21 C -0.039 4.039 22 C -0.105 4.105 23 C -0.124 4.124 24 C -0.142 4.142 25 C -0.121 4.121 26 C -0.124 4.124 27 H 0.271 0.729 28 H 0.198 0.802 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.415 -2.876 4.382 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.115 4.115 3 Si 0.710 3.290 4 H -0.176 1.176 5 H -0.192 1.192 6 H -0.219 1.219 7 C -0.562 4.562 8 H 0.100 0.900 9 C 0.155 3.845 10 H 0.086 0.914 11 O -0.202 6.202 12 C 0.232 3.768 13 N -0.287 5.287 14 C 0.055 3.945 15 N -0.273 5.273 16 C 0.039 3.961 17 C -0.244 4.244 18 C -0.153 4.153 19 S -0.030 6.030 20 C -0.168 4.168 21 C -0.040 4.040 22 C -0.123 4.123 23 C -0.142 4.142 24 C -0.161 4.161 25 C -0.139 4.139 26 C -0.142 4.142 27 H 0.081 0.919 28 H 0.214 0.786 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.141 0.859 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.873 -3.233 4.867 12.344 hybrid contribution 0.333 1.373 -0.959 1.708 sum 11.207 -1.861 3.907 12.013 Atomic orbital electron populations 1.69906 1.06609 1.27981 1.46048 1.25070 0.94753 0.99519 0.92167 0.86787 0.79491 0.82546 0.80165 1.17627 1.19209 1.21895 1.21012 0.87655 0.95650 1.51929 0.90032 1.19528 0.95777 0.90762 0.78480 0.91371 1.86315 1.79310 1.40835 1.13787 1.19877 0.83509 0.86867 0.86565 1.68279 1.21814 1.09745 1.28908 1.24522 0.88240 1.00126 0.81567 1.67866 1.18623 1.07211 1.33589 1.21647 0.91471 0.90548 0.92398 1.20960 1.12641 0.97123 0.93693 1.22556 1.05963 0.92882 0.93869 1.87800 1.95406 1.13222 1.06550 1.22750 1.05727 0.90533 0.97775 1.20035 0.93643 0.93679 0.96600 1.20946 0.98978 0.95143 0.97214 1.21055 0.99621 0.99067 0.94435 1.20939 1.02319 0.93561 0.99240 1.20955 1.00457 0.95331 0.97172 1.20994 0.99090 0.99677 0.94486 0.91911 0.78566 0.86470 0.87750 0.85924 0.86668 0.86118 0.86796 0.86967 0.86752 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.31 13.96 55.43 0.77 -24.53 16 2 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 3 Si 0.88 20.59 25.93 -169.99 -4.41 16.18 16 4 H -0.25 -5.56 6.89 56.52 0.39 -5.17 16 5 H -0.27 -5.89 5.33 56.52 0.30 -5.59 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.21 9.17 -34.44 -0.32 -14.52 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 9 C 0.21 4.79 2.02 -29.03 -0.06 4.73 16 10 H 0.07 1.60 3.61 -51.93 -0.19 1.41 16 11 O -0.30 -6.49 8.84 -18.24 -0.16 -6.65 16 12 C 0.42 8.57 7.50 -16.47 -0.12 8.44 16 13 N -0.56 -11.43 7.52 -14.56 -0.11 -11.54 16 14 C 0.34 6.00 12.29 -92.63 -1.14 4.86 16 15 N -0.55 -9.15 10.41 -10.49 -0.11 -9.26 16 16 C 0.18 2.83 7.04 -81.39 -0.57 2.26 16 17 C -0.24 -4.04 5.96 -103.47 -0.62 -4.65 16 18 C 0.00 -0.05 7.14 36.69 0.26 0.21 16 19 S -0.26 -3.34 23.44 -107.50 -2.52 -5.86 16 20 C -0.02 -0.23 7.39 36.73 0.27 0.04 16 21 C -0.04 -0.82 4.96 -104.62 -0.52 -1.34 16 22 C -0.10 -1.99 9.36 -39.58 -0.37 -2.36 16 23 C -0.12 -2.00 10.05 -39.59 -0.40 -2.40 16 24 C -0.14 -2.18 10.05 -39.59 -0.40 -2.58 16 25 C -0.12 -1.98 10.05 -39.59 -0.40 -2.38 16 26 C -0.12 -2.41 9.67 -39.59 -0.38 -2.79 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.20 2.80 8.06 -52.49 -0.42 2.38 16 29 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.12 2.25 7.74 -52.49 -0.41 1.85 16 34 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 35 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.12 2.28 6.57 -52.49 -0.34 1.93 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -30.05 326.63 -10.46 -40.50 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.99 Total: 6.29 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -4.86 Total: -10.05 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.55 Total: -45.34 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.16 Total: -6.65 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.41 Total: 16.18 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -2.52 Total: -5.86 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.05 -10.46 -40.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233896265.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.557 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds