Wall clock time and date at job start Tue Mar 31 2020 10:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 119.99936 * 2 1 4 4 H 1.48503 * 109.47112 * 94.42091 * 3 2 1 5 5 H 1.48503 * 109.47256 * 214.41965 * 3 2 1 6 6 H 1.48501 * 109.47661 * 334.41876 * 3 2 1 7 7 C 1.37872 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00284 * 5.95346 * 7 2 1 9 9 C 1.50705 * 119.99624 * 185.96184 * 7 2 1 10 10 H 1.09002 * 109.47279 * 4.67725 * 9 7 2 11 11 O 1.42902 * 109.47336 * 124.68069 * 9 7 2 12 12 C 1.35515 * 116.99945 * 269.99974 * 11 9 7 13 13 N 1.32353 * 120.11313 * 359.72471 * 12 11 9 14 14 C 1.31773 * 120.31794 * 179.74454 * 13 12 11 15 15 N 1.31254 * 121.48828 * 0.52048 * 14 13 12 16 16 C 1.33829 * 121.88078 * 359.75353 * 15 14 13 17 17 C 1.37170 * 118.51179 * 359.97438 * 16 15 14 18 18 C 1.52073 * 115.79242 * 180.02562 * 17 16 15 19 19 S 1.83291 * 103.45853 * 17.39633 * 18 17 16 20 20 C 1.52160 * 125.79152 * 179.97438 * 16 15 14 21 21 C 1.50706 * 109.46807 * 244.68094 * 9 7 2 22 22 C 1.38236 * 119.99813 * 278.61577 * 21 9 7 23 23 C 1.38232 * 119.99529 * 179.80990 * 22 21 9 24 24 C 1.38234 * 120.00121 * 0.40088 * 23 22 21 25 25 C 1.38232 * 120.00099 * 359.84911 * 24 23 22 26 26 C 1.38232 * 119.99989 * 359.96327 * 25 24 23 27 27 H 0.97006 * 120.00174 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.24962 * 180.26609 * 14 13 12 29 29 H 1.09001 * 110.62393 * 135.89173 * 18 17 16 30 30 H 1.09005 * 110.62488 * 258.90060 * 18 17 16 31 31 H 1.08996 * 110.62054 * 44.08318 * 20 16 15 32 32 H 1.09000 * 110.61675 * 281.07818 * 20 16 15 33 33 H 1.07994 * 120.00129 * 359.97438 * 22 21 9 34 34 H 1.08006 * 119.99692 * 180.23014 * 23 22 21 35 35 H 1.08003 * 119.99477 * 179.83656 * 24 23 22 36 36 H 1.07997 * 120.00146 * 179.97438 * 25 24 23 37 37 H 1.07998 * 120.00198 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5901 1.9924 1.3959 5 1 3.4968 1.4689 -0.7914 6 1 1.4030 2.6779 -0.6045 7 6 2.0044 -1.1941 -0.0005 8 1 1.4688 -2.1268 -0.0980 9 6 3.5054 -1.1977 0.1350 10 1 3.8573 -0.1801 0.3047 11 8 3.8819 -2.0224 1.2396 12 6 3.9800 -1.4218 2.4505 13 7 3.7369 -0.1264 2.5708 14 6 3.8261 0.4607 3.7472 15 7 4.1648 -0.2093 4.8238 16 6 4.4318 -1.5201 4.7858 17 6 4.3453 -2.1713 3.5816 18 6 4.6608 -3.6587 3.6095 19 16 4.5257 -4.0902 5.3858 20 6 4.8318 -2.3817 5.9745 21 6 4.1226 -1.7384 -1.1290 22 6 4.1991 -3.1037 -1.3316 23 6 4.7616 -3.5996 -2.4928 24 6 5.2552 -2.7304 -3.4477 25 6 5.1833 -1.3652 -3.2428 26 6 4.6172 -0.8692 -2.0833 27 1 -0.4851 0.8401 -0.0004 28 1 3.6198 1.5178 3.8264 29 1 3.9318 -4.2169 3.0222 30 1 5.6714 -3.8437 3.2452 31 1 4.2077 -2.1563 6.8392 32 1 5.8859 -2.2407 6.2133 33 1 3.8170 -3.7828 -0.5839 34 1 4.8181 -4.6662 -2.6528 35 1 5.6971 -3.1180 -4.3538 36 1 5.5692 -0.6862 -3.9886 37 1 4.5614 0.1973 -1.9230 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233896265.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:31 Heat of formation + Delta-G solvation = 27.693047 kcal Electronic energy + Delta-G solvation = -23433.594813 eV Core-core repulsion = 20073.992776 eV Total energy + Delta-G solvation = -3359.602037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.38792 -40.41910 -39.03192 -36.12926 -35.20302 -33.93350 -32.71846 -31.72035 -30.27465 -29.24371 -28.31142 -25.31319 -24.12548 -23.75350 -23.24199 -21.86615 -19.60225 -19.39613 -18.97615 -17.67285 -17.30222 -17.04232 -16.58433 -16.15455 -16.04904 -15.84548 -15.49355 -15.29159 -14.90060 -14.77496 -14.63926 -14.34761 -14.26035 -14.19556 -13.59058 -13.45948 -13.10856 -12.91122 -12.69547 -12.16342 -12.05686 -11.88718 -11.78879 -11.72705 -11.41544 -11.00844 -10.86167 -10.39973 -9.94881 -9.76145 -9.51910 -8.86049 -8.48723 -6.61314 -0.27279 0.03242 0.50885 0.56468 0.61233 0.94871 1.28894 1.38273 1.42568 1.99008 2.26250 2.61963 2.70374 2.87950 3.03489 3.08909 3.39643 3.57054 3.89425 4.04544 4.14590 4.19064 4.21676 4.25748 4.28215 4.34618 4.47296 4.49091 4.67010 4.75384 4.78222 5.08152 5.11942 5.22578 5.26556 5.61953 5.64708 5.78387 5.82971 5.93384 6.18327 6.30409 6.50764 6.99347 7.11641 8.65570 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.012221 B = 0.005666 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.563036 B = 4940.895458 C = 6379.095633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.043 3.957 3 Si 0.935 3.065 4 H -0.234 1.234 5 H -0.250 1.250 6 H -0.292 1.292 7 C -0.533 4.533 8 H 0.031 0.969 9 C 0.222 3.778 10 H 0.064 0.936 11 O -0.308 6.308 12 C 0.391 3.609 13 N -0.588 5.588 14 C 0.335 3.665 15 N -0.545 5.545 16 C 0.181 3.819 17 C -0.243 4.243 18 C -0.004 4.004 19 S -0.250 6.250 20 C -0.011 4.011 21 C -0.075 4.075 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.130 4.130 25 C -0.118 4.118 26 C -0.144 4.144 27 H 0.272 0.728 28 H 0.225 0.775 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.109 0.891 34 H 0.147 0.853 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.363 -2.930 4.482 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.159 4.159 3 Si 0.758 3.242 4 H -0.157 1.157 5 H -0.175 1.175 6 H -0.219 1.219 7 C -0.569 4.569 8 H 0.049 0.951 9 C 0.168 3.832 10 H 0.081 0.919 11 O -0.211 6.211 12 C 0.201 3.799 13 N -0.319 5.319 14 C 0.047 3.953 15 N -0.266 5.266 16 C 0.040 3.960 17 C -0.250 4.250 18 C -0.153 4.153 19 S -0.023 6.023 20 C -0.159 4.159 21 C -0.076 4.076 22 C -0.141 4.141 23 C -0.138 4.138 24 C -0.148 4.148 25 C -0.135 4.135 26 C -0.162 4.162 27 H 0.081 0.919 28 H 0.241 0.759 29 H 0.125 0.875 30 H 0.141 0.859 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.127 0.873 34 H 0.165 0.835 35 H 0.174 0.826 36 H 0.167 0.833 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.844 -3.301 4.993 15.083 hybrid contribution -0.510 1.227 -0.938 1.627 sum 13.334 -2.074 4.055 14.090 Atomic orbital electron populations 1.70039 1.08403 1.28849 1.48934 1.25864 0.95336 1.03021 0.91658 0.85955 0.78733 0.78029 0.81435 1.15682 1.17483 1.21853 1.21085 0.90145 0.93703 1.51997 0.95058 1.19210 0.93192 0.91038 0.79777 0.91860 1.86227 1.80013 1.40499 1.14350 1.20261 0.85219 0.87668 0.86745 1.68203 1.22784 1.10239 1.30640 1.25109 0.87886 1.01324 0.80950 1.67974 1.18030 1.07616 1.32938 1.22296 0.89990 0.90460 0.93287 1.21252 1.12139 0.98570 0.93082 1.22560 1.06678 0.90930 0.95155 1.87824 1.95613 1.13898 1.04986 1.22957 1.07963 0.88492 0.96458 1.20057 0.96201 0.95055 0.96279 1.21008 1.00114 0.94343 0.98627 1.21435 0.98071 1.01116 0.93154 1.21463 1.00352 0.92919 1.00025 1.21370 0.99010 0.96704 0.96438 1.21123 1.00218 0.99257 0.95578 0.91860 0.75872 0.87544 0.85903 0.83999 0.83512 0.87282 0.83547 0.82631 0.83293 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.83 13.96 21.45 0.30 -56.54 16 2 C 0.04 2.48 5.47 84.65 0.46 2.94 16 3 Si 0.94 43.44 25.93 68.60 1.78 45.22 16 4 H -0.23 -10.02 6.89 99.48 0.69 -9.33 16 5 H -0.25 -10.83 5.33 99.48 0.53 -10.30 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.53 -30.66 9.17 25.60 0.23 -30.42 16 8 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 9 C 0.22 10.70 2.02 29.11 0.06 10.76 16 10 H 0.06 3.06 3.61 -2.39 -0.01 3.05 16 11 O -0.31 -13.99 8.84 -88.17 -0.78 -14.77 16 12 C 0.39 16.27 7.50 85.17 0.64 16.91 16 13 N -0.59 -24.38 7.52 -312.89 -2.35 -26.74 16 14 C 0.34 11.42 12.29 181.05 2.23 13.65 16 15 N -0.55 -17.21 10.41 -187.11 -1.95 -19.16 16 16 C 0.18 5.39 7.04 42.47 0.30 5.69 16 17 C -0.24 -8.25 5.96 -19.12 -0.11 -8.36 16 18 C 0.00 -0.12 7.14 71.68 0.51 0.39 16 19 S -0.25 -6.01 23.44 -56.49 -1.32 -7.34 16 20 C -0.01 -0.22 7.39 71.70 0.53 0.31 16 21 C -0.08 -3.26 4.96 -19.86 -0.10 -3.36 16 22 C -0.12 -4.74 9.36 22.27 0.21 -4.53 16 23 C -0.12 -3.61 10.05 22.27 0.22 -3.39 16 24 C -0.13 -3.48 10.05 22.27 0.22 -3.25 16 25 C -0.12 -3.51 10.05 22.27 0.22 -3.28 16 26 C -0.14 -5.50 9.67 22.27 0.22 -5.28 16 27 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 28 H 0.23 6.03 8.06 -2.91 -0.02 6.01 16 29 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 30 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 31 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.15 2.23 8.14 -2.39 -0.02 2.22 16 33 H 0.11 4.31 7.74 -2.91 -0.02 4.29 16 34 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 35 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.11 4.29 6.57 -2.91 -0.02 4.27 16 Total: -1.00 -70.55 326.63 2.42 -68.12 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.91 Total: 22.44 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 5.84 Total: -11.24 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -4.00 Total: -102.43 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.78 Total: -14.77 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.78 Total: 45.22 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -1.32 Total: -7.34 kcal Total: -70.55 2.42 -68.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233896265.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.818 kcal (2) G-P(sol) polarization free energy of solvation -70.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds