Wall clock time and date at job start Tue Mar 31 2020 10:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00405 * 2 1 4 4 H 1.48493 * 109.46863 * 269.99718 * 3 2 1 5 5 H 1.48497 * 109.47196 * 29.99627 * 3 2 1 6 6 H 1.48499 * 109.47370 * 149.99804 * 3 2 1 7 7 C 1.37884 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00095 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99876 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47139 * 179.97438 * 9 7 2 11 11 C 1.35861 * 117.00204 * 179.97438 * 10 9 7 12 12 C 1.38901 * 119.89722 * 179.97438 * 11 10 9 13 13 C 1.37788 * 120.10675 * 180.02562 * 12 11 10 14 14 C 1.39779 * 119.89332 * 0.02562 * 13 12 11 15 15 C 1.47345 * 120.10487 * 179.97438 * 14 13 12 16 16 C 1.34272 * 120.00400 * 179.97438 * 15 14 13 17 17 C 1.47373 * 120.00666 * 180.02562 * 16 15 14 18 18 C 1.39748 * 120.15243 * 180.02562 * 17 16 15 19 19 C 1.37894 * 119.84924 * 180.02562 * 18 17 16 20 20 C 1.38503 * 120.14750 * 0.27893 * 19 18 17 21 21 Cl 1.73601 * 119.84764 * 179.69841 * 20 19 18 22 22 C 1.38494 * 120.30088 * 359.44580 * 20 19 18 23 23 C 1.37898 * 120.14937 * 0.55117 * 22 20 19 24 24 C 1.39784 * 119.79275 * 0.25430 * 14 13 12 25 25 C 1.37800 * 119.88934 * 359.46881 * 24 14 13 26 26 H 0.97002 * 119.99150 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47453 * 59.99726 * 9 7 2 28 28 H 1.09005 * 109.46923 * 299.99708 * 9 7 2 29 29 H 1.08003 * 119.94060 * 359.97438 * 12 11 10 30 30 H 1.07998 * 120.05286 * 180.02562 * 13 12 11 31 31 H 1.08003 * 120.00053 * 359.97438 * 15 14 13 32 32 H 1.08008 * 120.00011 * 0.02562 * 16 15 14 33 33 H 1.07999 * 120.07538 * 0.04337 * 18 17 16 34 34 H 1.08002 * 119.92216 * 179.97438 * 19 18 17 35 35 H 1.07999 * 119.92594 * 180.28292 * 22 20 19 36 36 H 1.07997 * 120.07627 * 179.75073 * 23 22 20 37 37 H 1.07992 * 120.05024 * 179.72581 * 24 14 13 38 38 H 1.08000 * 119.94580 * 180.27820 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1794 -3.5853 0.0005 11 6 1.6601 -4.8408 0.0011 12 6 2.5082 -5.9409 0.0006 13 6 1.9861 -7.2160 0.0006 14 6 0.6007 -7.4016 0.0006 15 6 0.0374 -8.7631 0.0000 16 6 -1.2937 -8.9390 0.0005 17 6 -1.8572 -10.3008 0.0005 18 6 -3.2421 -10.4874 0.0005 19 6 -3.7626 -11.7644 0.0011 20 6 -2.9161 -12.8606 0.0075 21 17 -3.5797 -14.4647 0.0160 22 6 -1.5426 -12.6828 0.0018 23 6 -1.0088 -11.4113 0.0012 24 6 -0.2487 -6.2915 -0.0049 25 6 0.2827 -5.0201 0.0009 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5566 0.8904 29 1 3.5785 -5.7964 -0.0007 30 1 2.6463 -8.0707 0.0006 31 1 0.6953 -9.6197 -0.0008 32 1 -1.9517 -8.0825 0.0009 33 1 -3.9033 -9.6335 -0.0002 34 1 -4.8328 -11.9100 0.0015 35 1 -0.8881 -13.5419 0.0022 36 1 0.0624 -11.2741 0.0008 37 1 -1.3197 -6.4300 -0.0094 38 1 -0.3727 -4.1618 0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241587322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:05 Heat of formation + Delta-G solvation = 6.051589 kcal Electronic energy + Delta-G solvation = -20864.348690 eV Core-core repulsion = 17469.471752 eV Total energy + Delta-G solvation = -3394.876938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.73549 -39.36968 -37.21472 -36.74634 -34.26596 -32.95250 -31.45867 -30.89680 -30.63509 -28.26923 -27.02587 -23.95818 -23.58484 -22.91772 -22.17484 -20.98711 -19.35511 -17.76153 -17.44882 -16.56749 -16.16453 -15.63673 -15.23418 -14.76864 -14.70689 -14.55469 -14.20522 -13.99747 -13.87301 -13.81627 -13.20728 -12.77413 -12.53465 -12.42756 -12.05792 -12.00195 -11.75138 -11.63378 -11.26721 -11.14593 -11.05074 -11.00525 -10.64863 -10.55226 -10.20695 -9.93267 -9.40222 -9.34732 -8.76311 -8.71854 -8.47661 -7.19134 -6.30562 -4.34622 0.32878 0.98524 1.48413 1.67936 1.82256 2.62480 3.20665 3.26064 3.30663 3.52051 4.08341 4.20638 4.38334 4.43879 4.48899 4.52875 4.86475 4.93660 5.01351 5.06874 5.14737 5.23286 5.28595 5.42264 5.60840 5.62646 5.67882 5.86236 5.90567 5.95472 6.05954 6.30588 6.31354 6.45447 6.49989 6.64157 6.69928 6.88079 6.91185 7.06132 7.15197 7.61936 7.88254 8.36805 8.77205 9.30901 10.80623 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.040378 B = 0.001775 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.278927 B =15768.642691 C =16446.761307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.914 3.086 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.071 0.929 9 C 0.191 3.809 10 O -0.314 6.314 11 C 0.166 3.834 12 C -0.173 4.173 13 C -0.062 4.062 14 C -0.137 4.137 15 C -0.059 4.059 16 C -0.154 4.154 17 C -0.030 4.030 18 C -0.104 4.104 19 C -0.106 4.106 20 C -0.046 4.046 21 Cl -0.078 7.078 22 C -0.105 4.105 23 C -0.112 4.112 24 C -0.060 4.060 25 C -0.215 4.215 26 H 0.268 0.732 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.405 -24.727 -0.001 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.564 4.564 8 H 0.089 0.911 9 C 0.119 3.881 10 O -0.226 6.226 11 C 0.117 3.883 12 C -0.192 4.192 13 C -0.080 4.080 14 C -0.137 4.137 15 C -0.077 4.077 16 C -0.172 4.172 17 C -0.031 4.031 18 C -0.122 4.122 19 C -0.125 4.125 20 C -0.072 4.072 21 Cl -0.049 7.049 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.078 4.078 25 C -0.234 4.234 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.140 0.860 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.423 -24.646 0.005 25.236 hybrid contribution -0.051 0.811 -0.012 0.813 sum -5.474 -23.835 -0.007 24.456 Atomic orbital electron populations 1.69948 1.06144 1.27697 1.49404 1.24942 0.95067 0.99589 0.94584 0.86228 0.79622 0.81650 0.78417 1.20253 1.20871 1.19465 1.20968 0.94298 0.88683 1.52446 0.91088 1.20705 0.88668 0.81743 0.97017 1.86127 1.39327 1.11899 1.85205 1.19483 0.91673 0.86588 0.90519 1.20375 0.99782 0.90425 1.08572 1.20963 0.93848 0.96131 0.97033 1.18678 0.93283 0.92284 1.09442 1.22059 0.94938 0.95109 0.95582 1.21886 0.95636 0.94246 1.05389 1.19163 0.93108 0.93347 0.97440 1.21286 0.94485 0.96648 0.99822 1.20979 0.99918 0.91203 1.00393 1.20984 0.93658 0.85852 1.06717 1.98366 1.86055 1.23472 1.97004 1.20960 0.92997 0.98056 1.00389 1.21332 1.00208 0.91146 1.00268 1.21091 0.99101 0.91419 0.96232 1.21430 0.94850 0.98523 1.08577 0.92269 0.95915 0.95893 0.85369 0.85811 0.86397 0.85720 0.84792 0.84965 0.84992 0.84797 0.86019 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.53 -14.77 9.43 -34.44 -0.32 -15.09 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 4.97 4.49 36.00 0.16 5.13 16 10 O -0.31 -7.40 10.11 -19.31 -0.20 -7.60 16 11 C 0.17 3.27 6.69 -39.09 -0.26 3.01 16 12 C -0.17 -2.82 9.97 -39.50 -0.39 -3.21 16 13 C -0.06 -0.84 9.78 -39.17 -0.38 -1.22 16 14 C -0.14 -1.85 5.87 -105.04 -0.62 -2.46 16 15 C -0.06 -0.64 9.30 -37.28 -0.35 -0.98 16 16 C -0.15 -1.58 9.30 -37.26 -0.35 -1.92 16 17 C -0.03 -0.29 5.87 -105.05 -0.62 -0.91 16 18 C -0.10 -0.91 9.79 -39.14 -0.38 -1.29 16 19 C -0.11 -0.89 9.81 -39.61 -0.39 -1.28 16 20 C -0.05 -0.40 6.33 -39.39 -0.25 -0.65 16 21 Cl -0.08 -0.65 28.95 -51.86 -1.50 -2.15 16 22 C -0.11 -0.88 9.81 -39.61 -0.39 -1.27 16 23 C -0.11 -0.97 9.41 -39.14 -0.37 -1.33 16 24 C -0.06 -0.90 9.40 -39.16 -0.37 -1.27 16 25 C -0.22 -3.91 9.02 -39.50 -0.36 -4.27 16 26 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 27 H 0.02 0.61 7.65 -51.93 -0.40 0.21 16 28 H 0.02 0.62 7.65 -51.93 -0.40 0.22 16 29 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.12 1.02 6.06 -52.48 -0.32 0.70 16 32 H 0.13 1.23 6.06 -52.48 -0.32 0.91 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.13 0.94 6.17 -52.49 -0.32 0.61 16 37 H 0.12 1.52 6.16 -52.49 -0.32 1.20 16 38 H 0.14 2.61 6.27 -52.49 -0.33 2.28 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -29.44 345.37 -10.57 -40.01 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.07 Total: 0.79 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -5.73 Total: -27.46 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.74 Total: -24.72 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.20 Total: -7.60 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.44 -10.57 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241587322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.064 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds