Wall clock time and date at job start Tue Mar 31 2020 10:39:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86798 * 120.00405 * 2 1
4 4 H 1.48493 * 109.46863 * 269.99718 * 3 2 1
5 5 H 1.48497 * 109.47196 * 29.99627 * 3 2 1
6 6 H 1.48499 * 109.47370 * 149.99804 * 3 2 1
7 7 C 1.37884 * 119.99708 * 179.97438 * 2 1 3
8 8 H 1.07997 * 120.00095 * 180.02562 * 7 2 1
9 9 C 1.50697 * 119.99876 * 0.02562 * 7 2 1
10 10 O 1.42895 * 109.47139 * 179.97438 * 9 7 2
11 11 C 1.35861 * 117.00204 * 179.97438 * 10 9 7
12 12 C 1.38901 * 119.89722 * 179.97438 * 11 10 9
13 13 C 1.37788 * 120.10675 * 180.02562 * 12 11 10
14 14 C 1.39779 * 119.89332 * 0.02562 * 13 12 11
15 15 C 1.47345 * 120.10487 * 179.97438 * 14 13 12
16 16 C 1.34272 * 120.00400 * 179.97438 * 15 14 13
17 17 C 1.47373 * 120.00666 * 180.02562 * 16 15 14
18 18 C 1.39748 * 120.15243 * 180.02562 * 17 16 15
19 19 C 1.37894 * 119.84924 * 180.02562 * 18 17 16
20 20 C 1.38503 * 120.14750 * 0.27893 * 19 18 17
21 21 Cl 1.73601 * 119.84764 * 179.69841 * 20 19 18
22 22 C 1.38494 * 120.30088 * 359.44580 * 20 19 18
23 23 C 1.37898 * 120.14937 * 0.55117 * 22 20 19
24 24 C 1.39784 * 119.79275 * 0.25430 * 14 13 12
25 25 C 1.37800 * 119.88934 * 359.46881 * 24 14 13
26 26 H 0.97002 * 119.99150 * 0.02562 * 1 2 3
27 27 H 1.09001 * 109.47453 * 59.99726 * 9 7 2
28 28 H 1.09005 * 109.46923 * 299.99708 * 9 7 2
29 29 H 1.08003 * 119.94060 * 359.97438 * 12 11 10
30 30 H 1.07998 * 120.05286 * 180.02562 * 13 12 11
31 31 H 1.08003 * 120.00053 * 359.97438 * 15 14 13
32 32 H 1.08008 * 120.00011 * 0.02562 * 16 15 14
33 33 H 1.07999 * 120.07538 * 0.04337 * 18 17 16
34 34 H 1.08002 * 119.92216 * 179.97438 * 19 18 17
35 35 H 1.07999 * 119.92594 * 180.28292 * 22 20 19
36 36 H 1.07997 * 120.07627 * 179.75073 * 23 22 20
37 37 H 1.07992 * 120.05024 * 179.72581 * 24 14 13
38 38 H 1.08000 * 119.94580 * 180.27820 * 25 24 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4968 2.0462 -1.4000
5 1 1.4468 2.6527 0.6999
6 1 3.5468 1.4401 0.7001
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2509 -2.4992 0.0005
10 8 2.1794 -3.5853 0.0005
11 6 1.6601 -4.8408 0.0011
12 6 2.5082 -5.9409 0.0006
13 6 1.9861 -7.2160 0.0006
14 6 0.6007 -7.4016 0.0006
15 6 0.0374 -8.7631 0.0000
16 6 -1.2937 -8.9390 0.0005
17 6 -1.8572 -10.3008 0.0005
18 6 -3.2421 -10.4874 0.0005
19 6 -3.7626 -11.7644 0.0011
20 6 -2.9161 -12.8606 0.0075
21 17 -3.5797 -14.4647 0.0160
22 6 -1.5426 -12.6828 0.0018
23 6 -1.0088 -11.4113 0.0012
24 6 -0.2487 -6.2915 -0.0049
25 6 0.2827 -5.0201 0.0009
26 1 -0.4849 0.8401 -0.0004
27 1 0.6246 -2.5571 -0.8896
28 1 0.6240 -2.5566 0.8904
29 1 3.5785 -5.7964 -0.0007
30 1 2.6463 -8.0707 0.0006
31 1 0.6953 -9.6197 -0.0008
32 1 -1.9517 -8.0825 0.0009
33 1 -3.9033 -9.6335 -0.0002
34 1 -4.8328 -11.9100 0.0015
35 1 -0.8881 -13.5419 0.0022
36 1 0.0624 -11.2741 0.0008
37 1 -1.3197 -6.4300 -0.0094
38 1 -0.3727 -4.1618 0.0013
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001241587322.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:39:05
Heat of formation + Delta-G solvation = -6.937021 kcal
Electronic energy + Delta-G solvation = -20864.911918 eV
Core-core repulsion = 17469.471752 eV
Total energy + Delta-G solvation = -3395.440167 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 314.081 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-40.95020 -40.23586 -38.57747 -37.47324 -35.35535 -34.88064 -32.11851 -32.05988
-31.72600 -29.95915 -28.33172 -25.41134 -24.82763 -23.69646 -23.35551 -22.21679
-20.26330 -19.26562 -18.49829 -18.23948 -17.24059 -16.73444 -16.49890 -16.45043
-16.02530 -15.73689 -15.37006 -14.97215 -14.57939 -14.53588 -14.43265 -14.19633
-13.84531 -13.58719 -13.37128 -12.98796 -12.96847 -12.76176 -12.73878 -12.41924
-12.23813 -12.17117 -12.15314 -11.81345 -11.63658 -11.31673 -11.03726 -10.70118
-10.02897 -9.98152 -9.55286 -8.41358 -8.35013 -6.55866 -0.49362 0.35723
0.42686 0.46249 1.17095 1.38708 1.41430 1.53536 1.66621 2.26114
2.73153 2.77515 2.93356 3.02863 3.62862 3.71265 3.90368 3.93494
3.99263 4.21600 4.31025 4.35056 4.36673 4.45208 4.47574 4.66220
4.75178 4.81900 4.94041 5.00998 5.08478 5.16942 5.22098 5.25776
5.27922 5.42003 5.49132 5.54101 5.73271 5.81375 5.83640 5.86628
5.94298 6.48538 6.77337 7.16367 8.70867
Molecular weight = 314.08amu
Principal moments of inertia in cm(-1)
A = 0.040378 B = 0.001775 C = 0.001702
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 693.278927 B =15768.642691 C =16446.761307
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.011 3.989
3 Si 0.989 3.011
4 H -0.266 1.266
5 H -0.272 1.272
6 H -0.263 1.263
7 C -0.559 4.559
8 H 0.067 0.933
9 C 0.212 3.788
10 O -0.337 6.337
11 C 0.112 3.888
12 C -0.171 4.171
13 C -0.055 4.055
14 C -0.115 4.115
15 C -0.076 4.076
16 C -0.134 4.134
17 C -0.052 4.052
18 C -0.107 4.107
19 C -0.114 4.114
20 C -0.052 4.052
21 Cl -0.076 7.076
22 C -0.112 4.112
23 C -0.109 4.109
24 C -0.069 4.069
25 C -0.230 4.230
26 H 0.274 0.726
27 H 0.001 0.999
28 H 0.001 0.999
29 H 0.139 0.861
30 H 0.169 0.831
31 H 0.148 0.852
32 H 0.125 0.875
33 H 0.147 0.853
34 H 0.146 0.854
35 H 0.149 0.851
36 H 0.154 0.846
37 H 0.144 0.856
38 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.036 -27.010 -0.013 27.475
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.563 5.563
2 C -0.188 4.188
3 Si 0.811 3.189
4 H -0.191 1.191
5 H -0.197 1.197
6 H -0.187 1.187
7 C -0.596 4.596
8 H 0.085 0.915
9 C 0.138 3.862
10 O -0.251 6.251
11 C 0.065 3.935
12 C -0.190 4.190
13 C -0.072 4.072
14 C -0.116 4.116
15 C -0.094 4.094
16 C -0.151 4.151
17 C -0.052 4.052
18 C -0.125 4.125
19 C -0.133 4.133
20 C -0.079 4.079
21 Cl -0.047 7.047
22 C -0.130 4.130
23 C -0.127 4.127
24 C -0.087 4.087
25 C -0.249 4.249
26 H 0.083 0.917
27 H 0.019 0.981
28 H 0.019 0.981
29 H 0.157 0.843
30 H 0.186 0.814
31 H 0.165 0.835
32 H 0.143 0.857
33 H 0.165 0.835
34 H 0.163 0.837
35 H 0.166 0.834
36 H 0.171 0.829
37 H 0.161 0.839
38 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -5.063 -26.969 -0.009 27.440
hybrid contribution -0.355 1.157 -0.007 1.210
sum -5.418 -25.812 -0.016 26.375
Atomic orbital electron populations
1.70057 1.07762 1.29071 1.49459 1.25978 0.96037 1.03412 0.93404
0.85097 0.78338 0.76512 0.78975 1.19133 1.19730 1.18735 1.21329
0.94405 0.90177 1.53714 0.91478 1.20182 0.88426 0.82680 0.94882
1.86030 1.38832 1.13048 1.87169 1.19912 0.93028 0.85800 0.94720
1.20646 1.00053 0.90490 1.07792 1.21425 0.94527 0.96091 0.95202
1.19055 0.93326 0.93251 1.05923 1.22090 0.95516 0.94134 0.97645
1.22052 0.95680 0.94840 1.02557 1.19233 0.93662 0.93185 0.99088
1.21511 0.94594 0.97297 0.99061 1.21183 1.00758 0.91056 1.00295
1.21212 0.94186 0.86087 1.06380 1.98370 1.86069 1.23344 1.96961
1.21201 0.93075 0.98694 1.00078 1.21581 1.01153 0.90837 0.99136
1.21332 1.00634 0.90518 0.96202 1.21346 0.94201 0.99324 1.10008
0.91698 0.98101 0.98082 0.84323 0.81354 0.83494 0.85742 0.83537
0.83656 0.83363 0.82900 0.83869 0.87225
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.42 13.29 21.45 0.28 -54.14 16
2 C 0.01 0.64 5.46 84.66 0.46 1.10 16
3 Si 0.99 43.40 29.54 68.60 2.03 45.42 16
4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16
5 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16
6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16
7 C -0.56 -32.92 9.43 25.60 0.24 -32.68 16
8 H 0.07 3.89 7.81 -2.91 -0.02 3.86 16
9 C 0.21 11.90 4.49 71.23 0.32 12.22 16
10 O -0.34 -17.12 10.11 -91.99 -0.93 -18.05 16
11 C 0.11 4.66 6.69 22.59 0.15 4.81 16
12 C -0.17 -5.56 9.97 22.32 0.22 -5.34 16
13 C -0.05 -1.35 9.78 22.54 0.22 -1.13 16
14 C -0.12 -2.86 5.87 -20.13 -0.12 -2.98 16
15 C -0.08 -1.37 9.30 23.76 0.22 -1.15 16
16 C -0.13 -2.34 9.30 23.77 0.22 -2.12 16
17 C -0.05 -0.83 5.87 -20.14 -0.12 -0.95 16
18 C -0.11 -1.60 9.79 22.55 0.22 -1.38 16
19 C -0.11 -1.67 9.81 22.25 0.22 -1.45 16
20 C -0.05 -0.80 6.33 22.39 0.14 -0.66 16
21 Cl -0.08 -1.13 28.95 -2.72 -0.08 -1.21 16
22 C -0.11 -1.55 9.81 22.25 0.22 -1.33 16
23 C -0.11 -1.52 9.41 22.56 0.21 -1.31 16
24 C -0.07 -2.06 9.40 22.54 0.21 -1.84 16
25 C -0.23 -8.93 9.02 22.32 0.20 -8.73 16
26 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16
27 H 0.00 0.07 7.65 -2.39 -0.02 0.05 16
28 H 0.00 0.08 7.65 -2.38 -0.02 0.06 16
29 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16
30 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16
31 H 0.15 1.80 6.06 -2.91 -0.02 1.78 16
32 H 0.12 2.16 6.06 -2.91 -0.02 2.14 16
33 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16
34 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16
35 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16
36 H 0.15 1.46 6.17 -2.91 -0.02 1.44 16
37 H 0.14 3.49 6.16 -2.91 -0.02 3.47 16
38 H 0.11 4.71 6.27 -2.91 -0.02 4.69 16
Total: -1.00 -67.08 345.37 5.63 -61.44
By element:
Atomic # 1 Polarization: 10.36 SS G_CDS: 1.08 Total: 11.44 kcal
Atomic # 6 Polarization: -48.16 SS G_CDS: 3.25 Total: -44.92 kcal
Atomic # 7 Polarization: -54.42 SS G_CDS: 0.28 Total: -54.14 kcal
Atomic # 8 Polarization: -17.12 SS G_CDS: -0.93 Total: -18.05 kcal
Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal
Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal
Total: -67.08 5.63 -61.44 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001241587322.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.505 kcal
(2) G-P(sol) polarization free energy of solvation -67.076 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.571 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.442 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.937 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds