Wall clock time and date at job start Tue Mar 31 2020 10:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00405 * 2 1 4 4 H 1.48493 * 109.46863 * 269.99718 * 3 2 1 5 5 H 1.48497 * 109.47196 * 29.99627 * 3 2 1 6 6 H 1.48499 * 109.47370 * 149.99804 * 3 2 1 7 7 C 1.37884 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00095 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99876 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47139 * 179.97438 * 9 7 2 11 11 C 1.35861 * 117.00204 * 179.97438 * 10 9 7 12 12 C 1.38901 * 119.89722 * 179.97438 * 11 10 9 13 13 C 1.37788 * 120.10675 * 180.02562 * 12 11 10 14 14 C 1.39779 * 119.89332 * 0.02562 * 13 12 11 15 15 C 1.47345 * 120.10487 * 179.97438 * 14 13 12 16 16 C 1.34272 * 120.00400 * 179.97438 * 15 14 13 17 17 C 1.47373 * 120.00666 * 180.02562 * 16 15 14 18 18 C 1.39748 * 120.15243 * 180.02562 * 17 16 15 19 19 C 1.37894 * 119.84924 * 180.02562 * 18 17 16 20 20 C 1.38503 * 120.14750 * 0.27893 * 19 18 17 21 21 Cl 1.73601 * 119.84764 * 179.69841 * 20 19 18 22 22 C 1.38494 * 120.30088 * 359.44580 * 20 19 18 23 23 C 1.37898 * 120.14937 * 0.55117 * 22 20 19 24 24 C 1.39784 * 119.79275 * 0.25430 * 14 13 12 25 25 C 1.37800 * 119.88934 * 359.46881 * 24 14 13 26 26 H 0.97002 * 119.99150 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47453 * 59.99726 * 9 7 2 28 28 H 1.09005 * 109.46923 * 299.99708 * 9 7 2 29 29 H 1.08003 * 119.94060 * 359.97438 * 12 11 10 30 30 H 1.07998 * 120.05286 * 180.02562 * 13 12 11 31 31 H 1.08003 * 120.00053 * 359.97438 * 15 14 13 32 32 H 1.08008 * 120.00011 * 0.02562 * 16 15 14 33 33 H 1.07999 * 120.07538 * 0.04337 * 18 17 16 34 34 H 1.08002 * 119.92216 * 179.97438 * 19 18 17 35 35 H 1.07999 * 119.92594 * 180.28292 * 22 20 19 36 36 H 1.07997 * 120.07627 * 179.75073 * 23 22 20 37 37 H 1.07992 * 120.05024 * 179.72581 * 24 14 13 38 38 H 1.08000 * 119.94580 * 180.27820 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1794 -3.5853 0.0005 11 6 1.6601 -4.8408 0.0011 12 6 2.5082 -5.9409 0.0006 13 6 1.9861 -7.2160 0.0006 14 6 0.6007 -7.4016 0.0006 15 6 0.0374 -8.7631 0.0000 16 6 -1.2937 -8.9390 0.0005 17 6 -1.8572 -10.3008 0.0005 18 6 -3.2421 -10.4874 0.0005 19 6 -3.7626 -11.7644 0.0011 20 6 -2.9161 -12.8606 0.0075 21 17 -3.5797 -14.4647 0.0160 22 6 -1.5426 -12.6828 0.0018 23 6 -1.0088 -11.4113 0.0012 24 6 -0.2487 -6.2915 -0.0049 25 6 0.2827 -5.0201 0.0009 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5566 0.8904 29 1 3.5785 -5.7964 -0.0007 30 1 2.6463 -8.0707 0.0006 31 1 0.6953 -9.6197 -0.0008 32 1 -1.9517 -8.0825 0.0009 33 1 -3.9033 -9.6335 -0.0002 34 1 -4.8328 -11.9100 0.0015 35 1 -0.8881 -13.5419 0.0022 36 1 0.0624 -11.2741 0.0008 37 1 -1.3197 -6.4300 -0.0094 38 1 -0.3727 -4.1618 0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241587322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:05 Heat of formation + Delta-G solvation = -6.937021 kcal Electronic energy + Delta-G solvation = -20864.911918 eV Core-core repulsion = 17469.471752 eV Total energy + Delta-G solvation = -3395.440167 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.081 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.95020 -40.23586 -38.57747 -37.47324 -35.35535 -34.88064 -32.11851 -32.05988 -31.72600 -29.95915 -28.33172 -25.41134 -24.82763 -23.69646 -23.35551 -22.21679 -20.26330 -19.26562 -18.49829 -18.23948 -17.24059 -16.73444 -16.49890 -16.45043 -16.02530 -15.73689 -15.37006 -14.97215 -14.57939 -14.53588 -14.43265 -14.19633 -13.84531 -13.58719 -13.37128 -12.98796 -12.96847 -12.76176 -12.73878 -12.41924 -12.23813 -12.17117 -12.15314 -11.81345 -11.63658 -11.31673 -11.03726 -10.70118 -10.02897 -9.98152 -9.55286 -8.41358 -8.35013 -6.55866 -0.49362 0.35723 0.42686 0.46249 1.17095 1.38708 1.41430 1.53536 1.66621 2.26114 2.73153 2.77515 2.93356 3.02863 3.62862 3.71265 3.90368 3.93494 3.99263 4.21600 4.31025 4.35056 4.36673 4.45208 4.47574 4.66220 4.75178 4.81900 4.94041 5.00998 5.08478 5.16942 5.22098 5.25776 5.27922 5.42003 5.49132 5.54101 5.73271 5.81375 5.83640 5.86628 5.94298 6.48538 6.77337 7.16367 8.70867 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.040378 B = 0.001775 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.278927 B =15768.642691 C =16446.761307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.989 3.011 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.559 4.559 8 H 0.067 0.933 9 C 0.212 3.788 10 O -0.337 6.337 11 C 0.112 3.888 12 C -0.171 4.171 13 C -0.055 4.055 14 C -0.115 4.115 15 C -0.076 4.076 16 C -0.134 4.134 17 C -0.052 4.052 18 C -0.107 4.107 19 C -0.114 4.114 20 C -0.052 4.052 21 Cl -0.076 7.076 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.069 4.069 25 C -0.230 4.230 26 H 0.274 0.726 27 H 0.001 0.999 28 H 0.001 0.999 29 H 0.139 0.861 30 H 0.169 0.831 31 H 0.148 0.852 32 H 0.125 0.875 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.036 -27.010 -0.013 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.085 0.915 9 C 0.138 3.862 10 O -0.251 6.251 11 C 0.065 3.935 12 C -0.190 4.190 13 C -0.072 4.072 14 C -0.116 4.116 15 C -0.094 4.094 16 C -0.151 4.151 17 C -0.052 4.052 18 C -0.125 4.125 19 C -0.133 4.133 20 C -0.079 4.079 21 Cl -0.047 7.047 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.087 4.087 25 C -0.249 4.249 26 H 0.083 0.917 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.157 0.843 30 H 0.186 0.814 31 H 0.165 0.835 32 H 0.143 0.857 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.161 0.839 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.063 -26.969 -0.009 27.440 hybrid contribution -0.355 1.157 -0.007 1.210 sum -5.418 -25.812 -0.016 26.375 Atomic orbital electron populations 1.70057 1.07762 1.29071 1.49459 1.25978 0.96037 1.03412 0.93404 0.85097 0.78338 0.76512 0.78975 1.19133 1.19730 1.18735 1.21329 0.94405 0.90177 1.53714 0.91478 1.20182 0.88426 0.82680 0.94882 1.86030 1.38832 1.13048 1.87169 1.19912 0.93028 0.85800 0.94720 1.20646 1.00053 0.90490 1.07792 1.21425 0.94527 0.96091 0.95202 1.19055 0.93326 0.93251 1.05923 1.22090 0.95516 0.94134 0.97645 1.22052 0.95680 0.94840 1.02557 1.19233 0.93662 0.93185 0.99088 1.21511 0.94594 0.97297 0.99061 1.21183 1.00758 0.91056 1.00295 1.21212 0.94186 0.86087 1.06380 1.98370 1.86069 1.23344 1.96961 1.21201 0.93075 0.98694 1.00078 1.21581 1.01153 0.90837 0.99136 1.21332 1.00634 0.90518 0.96202 1.21346 0.94201 0.99324 1.10008 0.91698 0.98101 0.98082 0.84323 0.81354 0.83494 0.85742 0.83537 0.83656 0.83363 0.82900 0.83869 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.42 13.29 21.45 0.28 -54.14 16 2 C 0.01 0.64 5.46 84.66 0.46 1.10 16 3 Si 0.99 43.40 29.54 68.60 2.03 45.42 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.56 -32.92 9.43 25.60 0.24 -32.68 16 8 H 0.07 3.89 7.81 -2.91 -0.02 3.86 16 9 C 0.21 11.90 4.49 71.23 0.32 12.22 16 10 O -0.34 -17.12 10.11 -91.99 -0.93 -18.05 16 11 C 0.11 4.66 6.69 22.59 0.15 4.81 16 12 C -0.17 -5.56 9.97 22.32 0.22 -5.34 16 13 C -0.05 -1.35 9.78 22.54 0.22 -1.13 16 14 C -0.12 -2.86 5.87 -20.13 -0.12 -2.98 16 15 C -0.08 -1.37 9.30 23.76 0.22 -1.15 16 16 C -0.13 -2.34 9.30 23.77 0.22 -2.12 16 17 C -0.05 -0.83 5.87 -20.14 -0.12 -0.95 16 18 C -0.11 -1.60 9.79 22.55 0.22 -1.38 16 19 C -0.11 -1.67 9.81 22.25 0.22 -1.45 16 20 C -0.05 -0.80 6.33 22.39 0.14 -0.66 16 21 Cl -0.08 -1.13 28.95 -2.72 -0.08 -1.21 16 22 C -0.11 -1.55 9.81 22.25 0.22 -1.33 16 23 C -0.11 -1.52 9.41 22.56 0.21 -1.31 16 24 C -0.07 -2.06 9.40 22.54 0.21 -1.84 16 25 C -0.23 -8.93 9.02 22.32 0.20 -8.73 16 26 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 27 H 0.00 0.07 7.65 -2.39 -0.02 0.05 16 28 H 0.00 0.08 7.65 -2.38 -0.02 0.06 16 29 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.15 1.80 6.06 -2.91 -0.02 1.78 16 32 H 0.12 2.16 6.06 -2.91 -0.02 2.14 16 33 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 36 H 0.15 1.46 6.17 -2.91 -0.02 1.44 16 37 H 0.14 3.49 6.16 -2.91 -0.02 3.47 16 38 H 0.11 4.71 6.27 -2.91 -0.02 4.69 16 Total: -1.00 -67.08 345.37 5.63 -61.44 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 1.08 Total: 11.44 kcal Atomic # 6 Polarization: -48.16 SS G_CDS: 3.25 Total: -44.92 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.28 Total: -54.14 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.93 Total: -18.05 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -67.08 5.63 -61.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241587322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.505 kcal (2) G-P(sol) polarization free energy of solvation -67.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds