Wall clock time and date at job start Tue Mar 31 2020 10:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46752 * 2 1 4 4 N 1.46901 * 109.47226 * 185.25345 * 3 2 1 5 5 C 1.46898 * 111.00531 * 163.96282 * 4 3 2 6 6 C 1.50705 * 109.46428 * 293.95111 * 5 4 3 7 7 H 1.07998 * 120.00227 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99578 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00123 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99775 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46922 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46843 * 120.00330 * 10 8 6 13 13 H 1.48496 * 109.47189 * 240.00384 * 10 8 6 14 14 C 1.46907 * 110.99661 * 287.91159 * 4 3 2 15 15 C 1.50702 * 109.46788 * 164.17012 * 14 4 3 16 16 C 1.34838 * 125.88374 * 95.45566 * 15 14 4 17 17 C 1.40914 * 107.42884 * 179.97438 * 16 15 14 18 18 C 1.34937 * 107.42086 * 0.02562 * 17 16 15 19 19 Br 1.89100 * 125.89906 * 180.02562 * 18 17 16 20 20 N 1.36357 * 108.20769 * 359.75590 * 18 17 16 21 21 C 1.46499 * 125.64565 * 180.24373 * 20 18 17 22 22 H 1.09002 * 109.47293 * 55.19786 * 1 2 3 23 23 H 1.09004 * 109.47102 * 175.19252 * 1 2 3 24 24 H 1.09003 * 109.47640 * 295.19309 * 1 2 3 25 25 H 1.08993 * 109.47309 * 239.99977 * 2 1 3 26 26 H 1.09000 * 109.47209 * 119.99914 * 2 1 3 27 27 H 1.09001 * 109.47297 * 65.25354 * 3 2 1 28 28 H 1.08999 * 109.47645 * 305.24923 * 3 2 1 29 29 H 1.09002 * 109.47307 * 53.94599 * 5 4 3 30 30 H 1.09000 * 109.47303 * 173.95390 * 5 4 3 31 31 H 0.96997 * 120.00072 * 180.02562 * 9 8 6 32 32 H 1.08990 * 109.47441 * 284.17235 * 14 4 3 33 33 H 1.08999 * 109.46968 * 44.17961 * 14 4 3 34 34 H 1.07999 * 126.28520 * 359.94299 * 16 15 14 35 35 H 1.08004 * 126.28571 * 179.97438 * 17 16 15 36 36 H 1.09003 * 109.47138 * 274.98597 * 21 20 18 37 37 H 1.09008 * 109.46928 * 34.98044 * 21 20 18 38 38 H 1.08996 * 109.47279 * 154.98476 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5034 1.4446 -0.1268 5 6 3.9969 2.7743 -0.5093 6 6 3.5163 3.1079 -1.8981 7 1 2.9050 2.4030 -2.4420 8 6 3.8561 4.3138 -2.4740 9 7 4.6000 5.1724 -1.8116 10 14 3.2610 4.7271 -4.1958 11 1 2.4468 3.6020 -4.7215 12 1 2.4322 5.9585 -4.1507 13 1 4.4303 4.9497 -5.0836 14 6 4.1400 0.9839 1.1144 15 6 5.5783 0.6280 0.8392 16 6 6.6415 1.4369 1.0218 17 6 7.7911 0.7145 0.6447 18 6 7.3863 -0.5092 0.2451 19 35 8.5077 -1.9021 -0.3699 20 7 6.0296 -0.5700 0.3671 21 6 5.1943 -1.7288 0.0420 22 1 -0.3634 0.5865 -0.8438 23 1 -0.3633 -1.0241 -0.0861 24 1 -0.3634 0.4374 0.9299 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.7554 1.9285 0.9333 28 1 1.6018 1.9828 -0.8392 29 1 3.6208 3.5175 0.1937 30 1 5.0868 2.7762 -0.4917 31 1 4.8388 6.0208 -2.2166 32 1 4.0984 1.7775 1.8603 33 1 3.6136 0.1057 1.4884 34 1 6.6165 2.4522 1.3891 35 1 8.8091 1.0744 0.6700 36 1 4.9584 -1.7196 -1.0221 37 1 5.7323 -2.6447 0.2870 38 1 4.2708 -1.6844 0.6193 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248776028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:41 Heat of formation + Delta-G solvation = 47.246521 kcal Electronic energy + Delta-G solvation = -18927.959632 eV Core-core repulsion = 16045.425186 eV Total energy + Delta-G solvation = -2882.534447 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 314.069 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93248 -37.06572 -33.20970 -32.61370 -32.42179 -31.36027 -29.08279 -27.06627 -26.14732 -25.23430 -23.73454 -21.33240 -20.28447 -20.11744 -18.70335 -16.55537 -16.39462 -15.30319 -14.93032 -14.56154 -14.35774 -13.92798 -13.49393 -13.17174 -13.04079 -12.62502 -12.31468 -12.23961 -12.02637 -11.89512 -11.65324 -11.53635 -11.26992 -10.97500 -10.82793 -10.68211 -10.59351 -10.35908 -10.26380 -10.07671 -9.74270 -9.15051 -8.42188 -8.26814 -7.64278 -7.27749 -5.99477 -3.99889 1.60857 2.35588 3.25314 3.31844 3.33036 3.39742 3.43765 4.44992 4.91446 4.95468 5.25472 5.27275 5.35654 5.38071 5.45045 5.54716 5.65657 5.75408 5.86007 5.92168 5.97409 6.06723 6.16863 6.18120 6.37502 6.49338 6.58708 6.63462 6.77116 7.21172 7.32716 7.35440 7.43027 7.55467 7.81412 8.12914 8.20666 8.54791 9.06959 9.63471 11.11446 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.012879 B = 0.004747 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.483798 B = 5896.440040 C = 7109.395831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.061 3.939 4 N -0.533 5.533 5 C 0.190 3.810 6 C -0.505 4.505 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.115 3.885 15 C 0.075 3.925 16 C -0.188 4.188 17 C -0.146 4.146 18 C -0.007 4.007 19 Br -0.021 7.021 20 N -0.423 5.423 21 C 0.074 3.926 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.019 0.981 28 H 0.088 0.912 29 H -0.011 1.011 30 H 0.043 0.957 31 H 0.260 0.740 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -15.154 6.614 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.067 4.067 4 N -0.258 5.258 5 C 0.065 3.935 6 C -0.544 4.544 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.210 1.210 14 C -0.013 4.013 15 C -0.040 4.040 16 C -0.213 4.213 17 C -0.174 4.174 18 C -0.196 4.196 19 Br 0.063 6.937 20 N -0.100 5.100 21 C -0.067 4.067 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.107 0.893 29 H 0.007 0.993 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.140 -16.131 5.902 17.462 hybrid contribution -0.645 1.221 -0.317 1.417 sum 2.495 -14.910 5.585 16.117 Atomic orbital electron populations 1.21727 0.96363 1.00903 1.01680 1.21573 0.94779 0.98052 1.01361 1.22056 0.88821 0.95173 1.00667 1.62168 1.04183 1.31599 1.27808 1.19818 0.96836 0.81414 0.95417 1.21157 1.31824 1.01326 1.00063 0.92060 1.24953 0.95364 0.96371 0.97781 1.69959 1.37306 1.08784 1.37474 0.86514 0.78515 0.78157 0.84664 1.19777 1.21154 1.21042 1.20556 0.88225 0.99368 0.93187 1.20363 0.95891 0.84872 1.02837 1.20715 0.90988 0.99908 1.09686 1.20713 0.99355 0.91881 1.05459 1.21642 0.84098 0.96585 1.17264 1.96594 1.61888 1.46853 1.88405 1.43695 1.04343 1.12086 1.49867 1.21990 0.95260 0.86538 1.02946 0.92525 0.93325 0.93234 0.91551 0.93329 0.96262 0.89339 0.99313 0.93931 0.93044 0.93152 0.91427 0.84082 0.84256 0.90348 0.90612 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.71 5.91 -26.73 -0.16 -1.87 16 3 C 0.06 1.11 4.81 -3.82 -0.02 1.09 16 4 N -0.53 -10.91 4.40 -237.51 -1.04 -11.95 16 5 C 0.19 4.84 4.57 -4.97 -0.02 4.82 16 6 C -0.50 -14.04 8.28 -34.44 -0.29 -14.33 16 7 H 0.06 1.70 7.26 -52.49 -0.38 1.32 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 10 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.12 2.01 4.95 -4.97 -0.02 1.98 16 15 C 0.08 1.35 5.84 -81.74 -0.48 0.87 16 16 C -0.19 -3.47 9.63 -39.78 -0.38 -3.85 16 17 C -0.15 -2.49 10.82 -39.74 -0.43 -2.92 16 18 C -0.01 -0.12 7.30 -16.71 -0.12 -0.24 16 19 Br -0.02 -0.27 33.45 -68.01 -2.28 -2.55 16 20 N -0.42 -6.89 3.15 -117.94 -0.37 -7.26 16 21 C 0.07 0.95 10.72 59.85 0.64 1.59 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.63 6.73 -51.93 -0.35 0.28 16 27 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 28 H 0.09 1.82 6.59 -51.93 -0.34 1.48 16 29 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 30 H 0.04 1.18 6.38 -51.93 -0.33 0.85 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.05 0.88 8.05 -51.93 -0.42 0.47 16 33 H 0.07 1.00 5.41 -51.93 -0.28 0.72 16 34 H 0.14 2.58 8.06 -52.49 -0.42 2.16 16 35 H 0.14 2.11 8.06 -52.48 -0.42 1.68 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.81 7.81 -51.92 -0.41 0.40 16 38 H 0.09 0.98 6.99 -51.93 -0.36 0.62 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -30.14 329.87 -9.82 -39.96 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.81 Total: -1.21 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.01 Total: -12.82 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.68 Total: -45.08 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -2.28 Total: -2.55 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.14 -9.82 -39.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248776028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.202 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds