Wall clock time and date at job start Tue Mar 31 2020 10:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46752 * 2 1 4 4 N 1.46901 * 109.47226 * 185.25345 * 3 2 1 5 5 C 1.46898 * 111.00531 * 163.96282 * 4 3 2 6 6 C 1.50705 * 109.46428 * 293.95111 * 5 4 3 7 7 H 1.07998 * 120.00227 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99578 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00123 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99775 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46922 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46843 * 120.00330 * 10 8 6 13 13 H 1.48496 * 109.47189 * 240.00384 * 10 8 6 14 14 C 1.46907 * 110.99661 * 287.91159 * 4 3 2 15 15 C 1.50702 * 109.46788 * 164.17012 * 14 4 3 16 16 C 1.34838 * 125.88374 * 95.45566 * 15 14 4 17 17 C 1.40914 * 107.42884 * 179.97438 * 16 15 14 18 18 C 1.34937 * 107.42086 * 0.02562 * 17 16 15 19 19 Br 1.89100 * 125.89906 * 180.02562 * 18 17 16 20 20 N 1.36357 * 108.20769 * 359.75590 * 18 17 16 21 21 C 1.46499 * 125.64565 * 180.24373 * 20 18 17 22 22 H 1.09002 * 109.47293 * 55.19786 * 1 2 3 23 23 H 1.09004 * 109.47102 * 175.19252 * 1 2 3 24 24 H 1.09003 * 109.47640 * 295.19309 * 1 2 3 25 25 H 1.08993 * 109.47309 * 239.99977 * 2 1 3 26 26 H 1.09000 * 109.47209 * 119.99914 * 2 1 3 27 27 H 1.09001 * 109.47297 * 65.25354 * 3 2 1 28 28 H 1.08999 * 109.47645 * 305.24923 * 3 2 1 29 29 H 1.09002 * 109.47307 * 53.94599 * 5 4 3 30 30 H 1.09000 * 109.47303 * 173.95390 * 5 4 3 31 31 H 0.96997 * 120.00072 * 180.02562 * 9 8 6 32 32 H 1.08990 * 109.47441 * 284.17235 * 14 4 3 33 33 H 1.08999 * 109.46968 * 44.17961 * 14 4 3 34 34 H 1.07999 * 126.28520 * 359.94299 * 16 15 14 35 35 H 1.08004 * 126.28571 * 179.97438 * 17 16 15 36 36 H 1.09003 * 109.47138 * 274.98597 * 21 20 18 37 37 H 1.09008 * 109.46928 * 34.98044 * 21 20 18 38 38 H 1.08996 * 109.47279 * 154.98476 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5034 1.4446 -0.1268 5 6 3.9969 2.7743 -0.5093 6 6 3.5163 3.1079 -1.8981 7 1 2.9050 2.4030 -2.4420 8 6 3.8561 4.3138 -2.4740 9 7 4.6000 5.1724 -1.8116 10 14 3.2610 4.7271 -4.1958 11 1 2.4468 3.6020 -4.7215 12 1 2.4322 5.9585 -4.1507 13 1 4.4303 4.9497 -5.0836 14 6 4.1400 0.9839 1.1144 15 6 5.5783 0.6280 0.8392 16 6 6.6415 1.4369 1.0218 17 6 7.7911 0.7145 0.6447 18 6 7.3863 -0.5092 0.2451 19 35 8.5077 -1.9021 -0.3699 20 7 6.0296 -0.5700 0.3671 21 6 5.1943 -1.7288 0.0420 22 1 -0.3634 0.5865 -0.8438 23 1 -0.3633 -1.0241 -0.0861 24 1 -0.3634 0.4374 0.9299 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.7554 1.9285 0.9333 28 1 1.6018 1.9828 -0.8392 29 1 3.6208 3.5175 0.1937 30 1 5.0868 2.7762 -0.4917 31 1 4.8388 6.0208 -2.2166 32 1 4.0984 1.7775 1.8603 33 1 3.6136 0.1057 1.4884 34 1 6.6165 2.4522 1.3891 35 1 8.8091 1.0744 0.6700 36 1 4.9584 -1.7196 -1.0221 37 1 5.7323 -2.6447 0.2870 38 1 4.2708 -1.6844 0.6193 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248776028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:41 Heat of formation + Delta-G solvation = 30.129460 kcal Electronic energy + Delta-G solvation = -18928.701884 eV Core-core repulsion = 16045.425186 eV Total energy + Delta-G solvation = -2883.276698 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 314.069 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.23177 -38.64413 -34.94604 -34.04877 -33.80903 -32.64689 -30.60365 -28.84409 -27.28180 -26.59205 -25.49907 -22.89133 -21.61201 -21.58119 -20.02203 -18.51362 -17.86735 -16.69901 -16.65716 -16.02400 -15.74678 -15.45483 -14.87003 -14.63674 -14.37165 -13.94438 -13.78609 -13.61998 -13.41257 -13.36245 -13.04424 -12.84183 -12.76757 -12.57559 -12.50966 -12.36650 -11.95289 -11.79405 -11.59868 -11.43652 -11.32872 -11.15253 -10.58441 -9.58182 -9.08982 -8.87393 -8.17222 -6.25581 0.36234 1.04016 1.38892 1.40260 1.52555 1.89396 2.10659 2.41034 3.15743 3.39662 3.89339 3.94510 4.08405 4.20690 4.32917 4.38237 4.51380 4.58627 4.60966 4.66734 4.69863 4.76244 4.99074 5.00657 5.15709 5.20126 5.21893 5.25564 5.35298 5.47467 5.52555 5.67300 5.87422 6.09156 6.11357 6.24903 6.41470 6.64227 6.90710 7.42842 8.93895 Molecular weight = 314.07amu Principal moments of inertia in cm(-1) A = 0.012879 B = 0.004747 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.483798 B = 5896.440040 C = 7109.395831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C 0.060 3.940 4 N -0.535 5.535 5 C 0.209 3.791 6 C -0.517 4.517 7 H 0.059 0.941 8 C 0.003 3.997 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.282 1.282 14 C 0.120 3.880 15 C 0.060 3.940 16 C -0.213 4.213 17 C -0.165 4.165 18 C -0.010 4.010 19 Br 0.013 6.987 20 N -0.422 5.422 21 C 0.067 3.933 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.021 0.979 28 H 0.059 0.941 29 H -0.042 1.042 30 H 0.015 0.985 31 H 0.262 0.738 32 H 0.044 0.956 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.152 0.848 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.893 -17.481 6.135 18.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.067 4.067 4 N -0.259 5.259 5 C 0.082 3.918 6 C -0.555 4.555 7 H 0.077 0.923 8 C -0.195 4.195 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.208 1.208 14 C -0.008 4.008 15 C -0.056 4.056 16 C -0.239 4.239 17 C -0.192 4.192 18 C -0.200 4.200 19 Br 0.096 6.904 20 N -0.099 5.099 21 C -0.073 4.073 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.040 0.960 28 H 0.077 0.923 29 H -0.025 1.025 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.269 -18.493 5.430 19.406 hybrid contribution -0.328 1.882 -0.134 1.915 sum 1.941 -16.610 5.296 17.542 Atomic orbital electron populations 1.21702 0.94588 1.02324 1.01697 1.21480 0.96206 0.94816 1.02112 1.22104 0.87206 0.97959 0.99463 1.62080 1.05692 1.28208 1.29935 1.19387 0.94974 0.83377 0.94034 1.21461 1.31566 1.01449 1.01037 0.92256 1.25833 0.95464 0.96300 1.01931 1.70090 1.38542 1.09271 1.39363 0.85449 0.78090 0.78238 0.79552 1.18784 1.20342 1.20787 1.20581 0.88326 1.00308 0.91604 1.20378 0.95817 0.85749 1.03632 1.20817 0.92421 0.99824 1.10806 1.20926 0.99642 0.92499 1.06169 1.21989 0.84629 0.97304 1.16058 1.96615 1.60857 1.44920 1.87994 1.43919 1.04693 1.12338 1.48907 1.22267 0.95910 0.86088 1.03047 0.93562 0.90964 0.92466 0.92082 0.91161 0.96047 0.92282 1.02458 0.96694 0.92892 0.93808 0.87998 0.85497 0.83059 0.90701 0.88276 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.91 71.98 0.71 -2.47 16 2 C -0.11 -2.84 5.91 30.59 0.18 -2.66 16 3 C 0.06 2.18 4.81 86.30 0.42 2.60 16 4 N -0.53 -22.06 4.40 -905.35 -3.98 -26.04 16 5 C 0.21 11.06 4.57 85.56 0.39 11.45 16 6 C -0.52 -29.41 8.28 25.60 0.21 -29.20 16 7 H 0.06 3.33 7.26 -2.91 -0.02 3.31 16 8 C 0.00 0.15 5.46 84.66 0.46 0.61 16 9 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 10 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.12 4.13 4.95 85.56 0.42 4.56 16 15 C 0.06 2.15 5.84 41.06 0.24 2.39 16 16 C -0.21 -8.18 9.63 22.14 0.21 -7.97 16 17 C -0.16 -5.68 10.82 22.17 0.24 -5.44 16 18 C -0.01 -0.33 7.30 83.23 0.61 0.28 16 19 Br 0.01 0.32 33.45 -20.37 -0.68 -0.36 16 20 N -0.42 -13.23 3.15 -527.05 -1.66 -14.89 16 21 C 0.07 1.54 10.72 127.77 1.37 2.91 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 1.55 6.73 -2.39 -0.02 1.54 16 27 H 0.02 0.75 8.05 -2.39 -0.02 0.73 16 28 H 0.06 2.47 6.59 -2.39 -0.02 2.45 16 29 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 30 H 0.01 0.87 6.38 -2.39 -0.02 0.86 16 31 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.04 1.57 8.05 -2.39 -0.02 1.55 16 33 H 0.10 2.77 5.41 -2.39 -0.01 2.75 16 34 H 0.13 5.05 8.06 -2.91 -0.02 5.02 16 35 H 0.15 4.62 8.06 -2.91 -0.02 4.60 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 1.79 7.81 -2.38 -0.02 1.77 16 38 H 0.10 1.99 6.99 -2.39 -0.02 1.97 16 Total: -1.00 -66.29 329.87 2.49 -63.80 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.03 Total: 10.00 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 5.47 Total: -22.94 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -5.36 Total: -97.53 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 35 Polarization: 0.32 SS G_CDS: -0.68 Total: -0.36 kcal Total: -66.29 2.49 -63.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248776028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.934 kcal (2) G-P(sol) polarization free energy of solvation -66.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds