Wall clock time and date at job start Tue Mar 31 2020 10:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99814 * 2 1 4 4 H 1.48509 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47110 * 299.99839 * 3 2 1 6 6 H 1.48499 * 109.47266 * 59.99996 * 3 2 1 7 7 C 1.37877 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99987 * 173.70292 * 7 2 1 9 9 C 1.50697 * 120.00071 * 353.70225 * 7 2 1 10 10 C 1.53007 * 115.54786 * 86.11554 * 9 7 2 11 11 O 1.42892 * 109.47087 * 65.10846 * 10 9 7 12 12 C 1.34939 * 116.99951 * 180.02562 * 11 10 9 13 13 O 1.21652 * 119.99722 * 359.97438 * 12 11 10 14 14 C 1.43201 * 120.00141 * 180.02562 * 12 11 10 15 15 C 7.06834 * 107.24178 * 225.68486 * 2 1 3 16 16 C 8.29102 * 112.26114 * 228.27968 * 2 1 3 17 17 C 1.39983 * 120.10893 * 298.66266 * 16 15 14 18 18 C 1.37709 * 119.97003 * 179.77775 * 17 16 15 19 19 C 1.38894 * 120.25618 * 0.40071 * 18 17 16 20 20 C 1.39600 * 120.10103 * 359.60571 * 19 18 17 21 21 C 1.38071 * 120.00572 * 0.18989 * 20 19 18 22 22 O 1.36539 * 108.58998 * 180.24050 * 20 19 18 23 23 C 1.43975 * 105.45388 * 342.67399 * 22 20 19 24 24 O 1.36390 * 131.32813 * 179.91208 * 19 18 17 25 25 C 1.53000 * 117.49867 * 231.78029 * 9 7 2 26 26 C 1.52993 * 117.50126 * 300.44139 * 9 7 2 27 27 H 0.96997 * 120.00033 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46512 * 305.10889 * 10 9 7 29 29 H 1.09004 * 109.46904 * 185.11249 * 10 9 7 30 30 H 1.07997 * 120.01146 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.87162 * 180.33324 * 18 17 16 32 32 H 1.07999 * 120.05643 * 180.02562 * 21 20 19 33 33 H 1.08993 * 110.56816 * 268.63099 * 23 22 20 34 34 H 1.09001 * 110.55720 * 145.78092 * 23 22 20 35 35 H 1.08996 * 117.49838 * 215.00116 * 25 9 7 36 36 H 1.08998 * 117.49757 * 0.02880 * 25 9 7 37 37 H 1.08998 * 117.49904 * 359.97438 * 26 9 7 38 38 H 1.09000 * 117.50099 * 144.97479 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1969 -0.1021 9 6 1.2579 -2.4951 0.1443 10 6 0.7193 -3.0941 -1.1566 11 8 1.8125 -3.4601 -2.0009 12 6 1.5071 -4.0068 -3.1961 13 8 0.3434 -4.1683 -3.5116 14 6 2.5529 -4.3979 -4.0928 15 6 3.4102 -4.7161 -4.8302 16 6 4.4560 -5.1064 -5.7272 17 6 5.3893 -6.0747 -5.3388 18 6 6.3911 -6.4512 -6.2054 19 6 6.4851 -5.8677 -7.4623 20 6 5.5581 -4.9013 -7.8567 21 6 4.5482 -4.5212 -6.9954 22 8 5.8653 -4.4948 -9.1235 23 6 7.2233 -4.9192 -9.3438 24 8 7.3692 -6.0634 -8.4823 25 6 1.7341 -3.4672 1.2256 26 6 0.4253 -2.6956 1.4121 27 1 -0.4850 0.8400 0.0004 28 1 0.0978 -2.3574 -1.6657 29 1 0.1232 -3.9781 -0.9301 30 1 5.3218 -6.5285 -4.3611 31 1 7.1071 -7.2023 -5.9061 32 1 3.8303 -3.7739 -7.2998 33 1 7.9215 -4.1328 -9.0575 34 1 7.3713 -5.2032 -10.3858 35 1 1.6636 -4.5334 1.0102 36 1 2.5871 -3.1654 1.8333 37 1 0.4180 -1.8865 2.1425 38 1 -0.5063 -3.2537 1.3195 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327136058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:38 Heat of formation + Delta-G solvation = -34.990374 kcal Electronic energy + Delta-G solvation = -23663.518960 eV Core-core repulsion = 19826.153144 eV Total energy + Delta-G solvation = -3837.365816 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.57263 -39.89355 -38.52430 -36.90748 -36.72908 -35.40303 -33.91775 -31.98313 -31.07816 -30.24826 -27.32127 -26.32834 -25.43440 -24.33476 -23.33400 -22.65694 -21.17397 -19.42082 -19.27151 -18.35484 -17.97143 -17.75395 -16.96831 -16.79707 -15.97825 -15.69256 -15.39250 -14.90677 -14.63729 -14.45224 -14.31351 -13.95939 -13.62370 -13.42712 -13.28820 -13.13368 -12.45678 -12.42275 -12.09187 -11.73555 -11.66909 -11.01850 -10.91694 -10.82918 -10.70742 -10.54672 -10.44083 -10.29485 -9.93501 -9.62557 -9.26518 -8.85074 -8.49890 -8.37172 -8.25493 -6.09586 -4.15039 0.25182 0.78322 1.44101 2.12842 2.38921 2.89443 3.06389 3.26618 3.26981 3.35375 3.39740 3.61843 3.99042 4.22389 4.25572 4.37878 4.48389 4.62277 4.72213 4.78928 5.07189 5.15148 5.20947 5.40873 5.60510 5.61447 5.74792 5.86699 5.91539 5.93835 6.19268 6.27934 6.45291 6.57112 6.64296 6.70097 6.99779 7.01159 7.05187 7.31592 7.42312 7.84542 8.18562 8.36553 8.87560 9.51337 10.99768 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.002461 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.459146 B =11372.565850 C =12099.065850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.491 4.491 8 H 0.064 0.936 9 C 0.036 3.964 10 C 0.111 3.889 11 O -0.314 6.314 12 C 0.573 3.427 13 O -0.494 6.494 14 C -0.143 4.143 15 C -0.039 4.039 16 C 0.017 3.983 17 C -0.071 4.071 18 C -0.100 4.100 19 C 0.046 3.954 20 C 0.031 3.969 21 C -0.069 4.069 22 O -0.306 6.306 23 C 0.213 3.787 24 O -0.306 6.306 25 C -0.205 4.205 26 C -0.142 4.142 27 H 0.261 0.739 28 H 0.079 0.921 29 H 0.042 0.958 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.330 -11.722 -14.698 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.528 4.528 8 H 0.083 0.917 9 C 0.035 3.965 10 C 0.037 3.963 11 O -0.229 6.229 12 C 0.417 3.583 13 O -0.384 6.384 14 C -0.144 4.144 15 C -0.040 4.040 16 C 0.017 3.983 17 C -0.089 4.089 18 C -0.118 4.118 19 C 0.002 3.998 20 C -0.013 4.013 21 C -0.087 4.087 22 O -0.222 6.222 23 C 0.101 3.899 24 O -0.222 6.222 25 C -0.242 4.242 26 C -0.180 4.180 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.168 0.832 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.105 0.895 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.841 -11.666 -14.961 22.909 hybrid contribution 0.299 1.080 -0.269 1.152 sum 13.140 -10.587 -15.230 22.731 Atomic orbital electron populations 1.70005 1.05909 1.26682 1.49120 1.25023 0.94870 0.99142 0.94427 0.86527 0.80339 0.83525 0.77631 1.19547 1.20986 1.20885 1.20439 0.93193 0.88290 1.50922 0.91737 1.18780 0.99204 0.94298 0.84177 1.22728 0.85669 0.97293 0.90598 1.86273 1.41369 1.69929 1.25325 1.17230 0.84766 0.75320 0.81001 1.90927 1.19763 1.51629 1.76130 1.19248 0.95493 1.02382 0.97275 1.18699 0.93849 0.95545 0.95910 1.15533 0.93322 0.98445 0.91010 1.21092 0.92181 0.95614 1.00058 1.19971 1.00526 1.02294 0.89020 1.20080 0.91552 0.97520 0.90684 1.19482 0.98421 0.98007 0.85433 1.20077 0.97755 1.00567 0.90330 1.87413 1.30415 1.77130 1.27218 1.25688 0.82069 0.85163 0.96985 1.87349 1.58303 1.43155 1.33426 1.23026 0.98610 0.95737 1.06838 1.22544 0.92341 1.01203 1.01903 0.92898 0.90309 0.93935 0.83236 0.83737 0.83689 0.89513 0.84911 0.91449 0.89980 0.89327 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.60 12.88 55.43 0.71 -23.89 16 2 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.49 -13.28 8.77 -34.44 -0.30 -13.58 16 8 H 0.06 1.76 7.82 -52.48 -0.41 1.35 16 9 C 0.04 0.88 1.62 -155.66 -0.25 0.63 16 10 C 0.11 2.59 5.20 37.16 0.19 2.78 16 11 O -0.31 -6.95 10.04 -41.15 -0.41 -7.36 16 12 C 0.57 11.49 7.79 32.66 0.25 11.75 16 13 O -0.49 -10.83 16.87 -19.38 -0.33 -11.16 16 14 C -0.14 -2.39 13.76 -38.83 -0.53 -2.93 16 15 C -0.04 -0.54 13.25 -38.83 -0.51 -1.06 16 16 C 0.02 0.19 5.75 -106.67 -0.61 -0.42 16 17 C -0.07 -0.63 9.76 -39.12 -0.38 -1.01 16 18 C -0.10 -0.81 10.04 -39.53 -0.40 -1.21 16 19 C 0.05 0.45 7.16 -38.83 -0.28 0.17 16 20 C 0.03 0.32 7.13 -39.13 -0.28 0.04 16 21 C -0.07 -0.73 9.78 -38.99 -0.38 -1.12 16 22 O -0.31 -2.98 11.41 -45.81 -0.52 -3.50 16 23 C 0.21 1.35 8.88 101.05 0.90 2.25 16 24 O -0.31 -2.73 11.39 -45.33 -0.52 -3.25 16 25 C -0.20 -4.37 9.96 -26.69 -0.27 -4.64 16 26 C -0.14 -3.24 9.37 -26.70 -0.25 -3.49 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.08 2.02 8.13 -51.93 -0.42 1.60 16 29 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 37 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -31.22 352.40 -8.17 -39.39 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.19 Total: -1.38 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -3.20 Total: -10.08 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.71 Total: -23.89 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -1.78 Total: -25.27 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.22 -8.17 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327136058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.398 kcal (2) G-P(sol) polarization free energy of solvation -31.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds