Wall clock time and date at job start Tue Mar 31 2020 10:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99814 * 2 1 4 4 H 1.48509 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47110 * 299.99839 * 3 2 1 6 6 H 1.48499 * 109.47266 * 59.99996 * 3 2 1 7 7 C 1.37877 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99987 * 173.70292 * 7 2 1 9 9 C 1.50697 * 120.00071 * 353.70225 * 7 2 1 10 10 C 1.53007 * 115.54786 * 86.11554 * 9 7 2 11 11 O 1.42892 * 109.47087 * 65.10846 * 10 9 7 12 12 C 1.34939 * 116.99951 * 180.02562 * 11 10 9 13 13 O 1.21652 * 119.99722 * 359.97438 * 12 11 10 14 14 C 1.43201 * 120.00141 * 180.02562 * 12 11 10 15 15 C 7.06834 * 107.24178 * 225.68486 * 2 1 3 16 16 C 8.29102 * 112.26114 * 228.27968 * 2 1 3 17 17 C 1.39983 * 120.10893 * 298.66266 * 16 15 14 18 18 C 1.37709 * 119.97003 * 179.77775 * 17 16 15 19 19 C 1.38894 * 120.25618 * 0.40071 * 18 17 16 20 20 C 1.39600 * 120.10103 * 359.60571 * 19 18 17 21 21 C 1.38071 * 120.00572 * 0.18989 * 20 19 18 22 22 O 1.36539 * 108.58998 * 180.24050 * 20 19 18 23 23 C 1.43975 * 105.45388 * 342.67399 * 22 20 19 24 24 O 1.36390 * 131.32813 * 179.91208 * 19 18 17 25 25 C 1.53000 * 117.49867 * 231.78029 * 9 7 2 26 26 C 1.52993 * 117.50126 * 300.44139 * 9 7 2 27 27 H 0.96997 * 120.00033 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46512 * 305.10889 * 10 9 7 29 29 H 1.09004 * 109.46904 * 185.11249 * 10 9 7 30 30 H 1.07997 * 120.01146 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.87162 * 180.33324 * 18 17 16 32 32 H 1.07999 * 120.05643 * 180.02562 * 21 20 19 33 33 H 1.08993 * 110.56816 * 268.63099 * 23 22 20 34 34 H 1.09001 * 110.55720 * 145.78092 * 23 22 20 35 35 H 1.08996 * 117.49838 * 215.00116 * 25 9 7 36 36 H 1.08998 * 117.49757 * 0.02880 * 25 9 7 37 37 H 1.08998 * 117.49904 * 359.97438 * 26 9 7 38 38 H 1.09000 * 117.50099 * 144.97479 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1969 -0.1021 9 6 1.2579 -2.4951 0.1443 10 6 0.7193 -3.0941 -1.1566 11 8 1.8125 -3.4601 -2.0009 12 6 1.5071 -4.0068 -3.1961 13 8 0.3434 -4.1683 -3.5116 14 6 2.5529 -4.3979 -4.0928 15 6 3.4102 -4.7161 -4.8302 16 6 4.4560 -5.1064 -5.7272 17 6 5.3893 -6.0747 -5.3388 18 6 6.3911 -6.4512 -6.2054 19 6 6.4851 -5.8677 -7.4623 20 6 5.5581 -4.9013 -7.8567 21 6 4.5482 -4.5212 -6.9954 22 8 5.8653 -4.4948 -9.1235 23 6 7.2233 -4.9192 -9.3438 24 8 7.3692 -6.0634 -8.4823 25 6 1.7341 -3.4672 1.2256 26 6 0.4253 -2.6956 1.4121 27 1 -0.4850 0.8400 0.0004 28 1 0.0978 -2.3574 -1.6657 29 1 0.1232 -3.9781 -0.9301 30 1 5.3218 -6.5285 -4.3611 31 1 7.1071 -7.2023 -5.9061 32 1 3.8303 -3.7739 -7.2998 33 1 7.9215 -4.1328 -9.0575 34 1 7.3713 -5.2032 -10.3858 35 1 1.6636 -4.5334 1.0102 36 1 2.5871 -3.1654 1.8333 37 1 0.4180 -1.8865 2.1425 38 1 -0.5063 -3.2537 1.3195 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327136058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:37 Heat of formation + Delta-G solvation = -51.199442 kcal Electronic energy + Delta-G solvation = -23664.221838 eV Core-core repulsion = 19826.153144 eV Total energy + Delta-G solvation = -3838.068694 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.23701 -41.55276 -39.30313 -38.67817 -37.40172 -37.14379 -35.03335 -34.02722 -31.84356 -31.11515 -28.99251 -27.47936 -26.91365 -25.51254 -24.05442 -23.80536 -22.93401 -21.24891 -20.49647 -19.25931 -18.96437 -18.65403 -18.40244 -17.82584 -17.49222 -17.44299 -16.59548 -16.26239 -15.75092 -15.58225 -15.16473 -15.05555 -14.99646 -14.43005 -14.17526 -14.12972 -14.08443 -13.86730 -13.61537 -12.99841 -12.91730 -12.83243 -12.56931 -12.40977 -12.18206 -12.05970 -11.91513 -11.74641 -11.52802 -11.45809 -10.78001 -10.50207 -10.10293 -10.02470 -9.13907 -8.14896 -6.26121 -0.65025 0.06346 0.10272 1.06333 1.40130 1.42955 1.47296 1.54143 1.85546 2.01014 2.41596 2.42675 2.58525 3.01753 3.14753 3.27689 3.49283 3.75698 3.89664 3.92849 4.04012 4.10117 4.11881 4.22054 4.37255 4.43733 4.45965 4.64452 4.75568 4.84842 4.85976 4.98813 5.01888 5.13900 5.19607 5.22162 5.32504 5.52412 5.61929 5.74556 5.82042 5.96089 6.34110 6.56852 6.79604 7.42929 8.94088 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.002461 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.459146 B =11372.565850 C =12099.065850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.054 0.946 9 C 0.000 4.000 10 C 0.122 3.878 11 O -0.325 6.325 12 C 0.580 3.420 13 O -0.522 6.522 14 C -0.206 4.206 15 C 0.025 3.975 16 C -0.014 4.014 17 C -0.055 4.055 18 C -0.095 4.095 19 C 0.051 3.949 20 C 0.016 3.984 21 C -0.072 4.072 22 O -0.323 6.323 23 C 0.203 3.797 24 O -0.314 6.314 25 C -0.177 4.177 26 C -0.142 4.142 27 H 0.262 0.738 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.172 0.828 31 H 0.176 0.824 32 H 0.144 0.856 33 H 0.107 0.893 34 H 0.165 0.835 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.946 -13.035 -15.533 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.000 4.000 10 C 0.048 3.952 11 O -0.240 6.240 12 C 0.426 3.574 13 O -0.414 6.414 14 C -0.207 4.207 15 C 0.024 3.976 16 C -0.015 4.015 17 C -0.072 4.072 18 C -0.113 4.113 19 C 0.005 3.995 20 C -0.029 4.029 21 C -0.091 4.091 22 O -0.240 6.240 23 C 0.093 3.907 24 O -0.230 6.230 25 C -0.214 4.214 26 C -0.180 4.180 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.190 0.810 31 H 0.193 0.807 32 H 0.162 0.838 33 H 0.125 0.875 34 H 0.182 0.818 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.479 -12.987 -15.803 25.651 hybrid contribution -0.320 1.397 -0.203 1.448 sum 15.159 -11.590 -16.006 24.906 Atomic orbital electron populations 1.70102 1.07075 1.27324 1.50056 1.25721 0.95633 1.02137 0.94229 0.85605 0.79326 0.79770 0.77601 1.19000 1.21002 1.20221 1.20678 0.92969 0.89896 1.50836 0.92735 1.18888 1.01002 0.94854 0.85301 1.22390 0.85693 0.96931 0.90184 1.86256 1.40930 1.70479 1.26330 1.17475 0.85317 0.74122 0.80465 1.90891 1.21178 1.52870 1.76449 1.18675 0.97202 1.05867 0.99000 1.19092 0.92425 0.92167 0.93960 1.15635 0.93971 1.00784 0.91083 1.21359 0.90921 0.93992 1.00969 1.20298 1.00525 1.02313 0.88139 1.20385 0.91109 0.96766 0.91194 1.19557 0.98739 0.98682 0.85883 1.20076 0.98049 1.00585 0.90368 1.87391 1.32223 1.77494 1.26860 1.26213 0.80950 0.85147 0.98374 1.87341 1.57999 1.44215 1.33406 1.23042 0.97692 0.96521 1.04130 1.22487 0.93762 1.01256 1.00489 0.92925 0.93674 0.92408 0.81028 0.80673 0.83777 0.87506 0.81792 0.88821 0.89539 0.91086 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.85 12.88 21.45 0.28 -51.57 16 2 C 0.02 1.28 5.38 84.65 0.46 1.73 16 3 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.51 -27.81 8.77 25.60 0.22 -27.59 16 8 H 0.05 3.01 7.82 -2.91 -0.02 2.99 16 9 C 0.00 0.00 1.62 -52.93 -0.09 -0.09 16 10 C 0.12 5.85 5.20 71.98 0.37 6.22 16 11 O -0.32 -14.75 10.04 -58.55 -0.59 -15.34 16 12 C 0.58 24.10 7.79 69.07 0.54 24.63 16 13 O -0.52 -23.82 16.87 19.34 0.33 -23.49 16 14 C -0.21 -7.02 13.76 30.01 0.41 -6.61 16 15 C 0.02 0.67 13.25 30.01 0.40 1.07 16 16 C -0.01 -0.30 5.75 -21.19 -0.12 -0.42 16 17 C -0.05 -0.81 9.76 22.57 0.22 -0.59 16 18 C -0.09 -1.21 10.04 22.30 0.22 -0.99 16 19 C 0.05 0.84 7.16 22.76 0.16 1.00 16 20 C 0.02 0.30 7.13 22.56 0.16 0.46 16 21 C -0.07 -1.47 9.78 22.65 0.22 -1.25 16 22 O -0.32 -5.77 11.41 -76.51 -0.87 -6.64 16 23 C 0.20 2.05 8.88 113.37 1.01 3.06 16 24 O -0.31 -4.69 11.39 -74.77 -0.85 -5.55 16 25 C -0.18 -7.33 9.96 30.62 0.30 -7.03 16 26 C -0.14 -6.47 9.37 30.62 0.29 -6.19 16 27 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 28 H 0.04 2.43 8.13 -2.39 -0.02 2.41 16 29 H 0.06 2.53 8.08 -2.38 -0.02 2.51 16 30 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 31 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 33 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.07 3.44 8.14 -2.39 -0.02 3.42 16 38 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -68.84 352.40 6.20 -62.64 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.10 Total: 7.06 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 4.78 Total: -12.56 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.28 Total: -51.57 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -1.99 Total: -51.02 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -68.84 6.20 -62.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327136058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.437 kcal (2) G-P(sol) polarization free energy of solvation -68.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds