Wall clock time and date at job start Tue Mar 31 2020 10:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99576 * 2 1 4 4 H 1.48495 * 109.47624 * 264.87017 * 3 2 1 5 5 H 1.48501 * 109.47084 * 24.87369 * 3 2 1 6 6 H 1.48504 * 109.46921 * 144.87028 * 3 2 1 7 7 C 1.37870 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00265 * 359.92438 * 7 2 1 9 9 C 1.50704 * 120.00077 * 179.97438 * 7 2 1 10 10 H 1.08996 * 109.46868 * 332.47454 * 9 7 2 11 11 O 1.45206 * 109.47111 * 92.47583 * 9 7 2 12 12 C 1.34754 * 116.99512 * 210.00312 * 11 9 7 13 13 O 1.21506 * 120.00394 * 359.97438 * 12 11 9 14 14 C 1.47394 * 119.99757 * 180.02562 * 12 11 9 15 15 C 1.39594 * 120.06033 * 0.02562 * 14 12 11 16 16 C 1.37757 * 120.18116 * 179.97438 * 15 14 12 17 17 C 1.38662 * 119.98651 * 359.87119 * 16 15 14 18 18 C 1.37663 * 120.33097 * 359.96287 * 17 16 15 19 19 C 1.38874 * 120.87214 * 0.35518 * 18 17 16 20 20 O 1.36089 * 111.40585 * 179.11623 * 19 18 17 21 21 C 1.43777 * 109.13261 * 18.72798 * 20 19 18 22 22 C 1.51666 * 132.13832 * 180.39352 * 18 17 16 23 23 C 1.50701 * 109.47227 * 212.47547 * 9 7 2 24 24 C 1.34515 * 125.78972 * 96.13280 * 23 9 7 25 25 C 1.41388 * 106.83656 * 179.97438 * 24 23 9 26 26 C 1.34510 * 106.84240 * 0.02562 * 25 24 23 27 27 O 1.34298 * 108.42170 * 359.73477 * 26 25 24 28 28 H 0.96995 * 120.00037 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.90768 * 359.97438 * 15 14 12 30 30 H 1.08002 * 120.01162 * 179.86470 * 16 15 14 31 31 H 1.07997 * 119.83845 * 179.97438 * 17 16 15 32 32 H 1.09000 * 110.75001 * 214.11061 * 21 20 19 33 33 H 1.09000 * 110.75113 * 90.93908 * 21 20 19 34 34 H 1.09001 * 110.95020 * 46.44362 * 22 18 17 35 35 H 1.09000 * 110.98108 * 282.75470 * 22 18 17 36 36 H 1.07998 * 126.58166 * 0.03928 * 24 23 9 37 37 H 1.07998 * 126.57407 * 179.97438 * 25 24 23 38 38 H 1.08000 * 125.78608 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6050 1.9840 -1.3944 5 1 1.3964 2.6815 0.5889 6 1 3.4882 1.4740 0.8057 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 0.0003 9 6 3.5116 -1.1939 -0.0011 10 1 3.8747 -0.2825 -0.4760 11 8 3.9962 -1.2533 1.3664 12 6 5.1805 -0.6634 1.6219 13 8 5.7918 -0.1148 0.7265 14 6 5.7350 -0.6846 2.9874 15 6 5.0346 -1.3158 4.0168 16 6 5.5507 -1.3376 5.2938 17 6 6.7705 -0.7336 5.5587 18 6 7.4715 -0.1112 4.5506 19 6 6.9712 -0.0688 3.2558 20 8 7.8076 0.6075 2.4220 21 6 9.1132 0.6783 3.0200 22 6 8.8043 0.6123 4.5346 23 6 4.0138 -2.3923 -0.7645 24 6 4.3854 -2.4024 -2.0572 25 6 4.7854 -3.7247 -2.3580 26 6 4.6337 -4.4436 -1.2313 27 8 4.1713 -3.6303 -0.2679 28 1 -0.4850 0.8400 0.0004 29 1 4.0854 -1.7885 3.8114 30 1 5.0055 -1.8249 6.0886 31 1 7.1727 -0.7517 6.5608 32 1 9.6037 1.6180 2.7663 33 1 9.7250 -0.1701 2.7133 34 1 9.5657 0.0384 5.0629 35 1 8.7105 1.6128 4.9570 36 1 4.3803 -1.5616 -2.7350 37 1 5.1432 -4.0880 -3.3101 38 1 4.8518 -5.4954 -1.1191 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350312699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:43 Heat of formation + Delta-G solvation = -68.548994 kcal Electronic energy + Delta-G solvation = -25894.916067 eV Core-core repulsion = 22056.095040 eV Total energy + Delta-G solvation = -3838.821027 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.79100 -41.17043 -39.20054 -37.28815 -35.57234 -33.15144 -32.74536 -32.24825 -30.69871 -30.07530 -29.25111 -27.08590 -24.40449 -23.30127 -22.50315 -21.90935 -21.07286 -20.33128 -19.42009 -17.65511 -17.36558 -17.02241 -16.68662 -16.55834 -16.14155 -15.60989 -15.16488 -14.99227 -14.82371 -14.33320 -13.67855 -13.46729 -13.26881 -13.17014 -12.83335 -12.59793 -12.25972 -12.08876 -12.06602 -11.90439 -11.86393 -11.59204 -11.28291 -11.22757 -10.95065 -10.91761 -10.16823 -9.76325 -9.72316 -9.56069 -9.20684 -8.96211 -8.92355 -8.18630 -7.70379 -6.48906 -4.58446 0.90159 1.31294 2.47645 3.04177 3.10779 3.22329 3.24375 3.29486 3.35366 3.59544 3.79279 3.95878 4.14223 4.24629 4.44507 4.75945 4.85164 4.97926 5.09482 5.15730 5.28026 5.40738 5.42798 5.53303 5.60167 5.63076 5.68167 5.83462 5.98755 6.18705 6.25081 6.31981 6.42169 6.47985 6.60382 6.62052 6.78571 7.09923 7.11312 7.18036 7.47050 7.92530 8.08103 8.61619 8.71531 9.08129 10.59487 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.005229 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.783328 B = 5353.598600 C = 6239.200748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.094 3.906 3 Si 0.868 3.132 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.504 4.504 8 H 0.090 0.910 9 C 0.255 3.745 10 H 0.079 0.921 11 O -0.350 6.350 12 C 0.490 3.510 13 O -0.511 6.511 14 C -0.138 4.138 15 C -0.026 4.026 16 C -0.164 4.164 17 C -0.044 4.044 18 C -0.197 4.197 19 C 0.165 3.835 20 O -0.277 6.277 21 C 0.044 3.956 22 C -0.105 4.105 23 C 0.033 3.967 24 C -0.228 4.228 25 C -0.210 4.210 26 C -0.072 4.072 27 O -0.168 6.168 28 H 0.276 0.724 29 H 0.152 0.848 30 H 0.136 0.864 31 H 0.127 0.873 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.300 -1.804 9.351 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.116 4.116 3 Si 0.693 3.307 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.540 4.540 8 H 0.108 0.892 9 C 0.204 3.796 10 H 0.096 0.904 11 O -0.267 6.267 12 C 0.335 3.665 13 O -0.402 6.402 14 C -0.140 4.140 15 C -0.045 4.045 16 C -0.182 4.182 17 C -0.062 4.062 18 C -0.198 4.198 19 C 0.118 3.882 20 O -0.189 6.189 21 C -0.031 4.031 22 C -0.142 4.142 23 C -0.018 4.018 24 C -0.248 4.248 25 C -0.229 4.229 26 C -0.140 4.140 27 O -0.063 6.063 28 H 0.086 0.914 29 H 0.170 0.830 30 H 0.153 0.847 31 H 0.145 0.855 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 15.168 -1.524 9.103 17.756 hybrid contribution 0.529 0.836 -0.299 1.033 sum 15.697 -0.688 8.804 18.011 Atomic orbital electron populations 1.69855 1.06346 1.28392 1.44540 1.25093 0.94924 0.99408 0.92137 0.86943 0.80830 0.82866 0.80084 1.18974 1.20158 1.18146 1.20792 0.85859 0.95827 1.51486 0.89152 1.19552 0.94511 0.88613 0.76936 0.90392 1.87167 1.32756 1.69343 1.37415 1.21081 0.80987 0.76322 0.88147 1.90781 1.60081 1.42382 1.46930 1.18874 0.95205 1.06227 0.93743 1.21433 0.98850 0.93122 0.91053 1.21024 0.96514 1.03602 0.97064 1.20462 0.93691 0.94184 0.97905 1.20697 0.99473 1.06064 0.93522 1.19566 0.90707 0.89309 0.88593 1.87100 1.19653 1.68836 1.43307 1.23914 0.84272 1.03646 0.91294 1.21768 0.94247 1.01097 0.97093 1.23289 0.99431 0.84637 0.94477 1.21373 1.08909 0.98313 0.96168 1.21661 1.07688 0.94168 0.99400 1.23816 1.05892 0.96510 0.87758 1.84068 1.64994 1.18706 1.38568 0.91406 0.83014 0.84661 0.85464 0.87509 0.90390 0.89009 0.89150 0.84018 0.84220 0.79016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.70 13.96 55.43 0.77 -23.92 16 2 C 0.09 2.62 5.47 -17.82 -0.10 2.53 16 3 Si 0.87 21.54 26.88 -169.99 -4.57 16.97 16 4 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -6.63 6.80 56.52 0.38 -6.24 16 7 C -0.50 -14.27 9.23 -34.44 -0.32 -14.59 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 9 C 0.26 6.65 1.92 -29.03 -0.06 6.60 16 10 H 0.08 2.09 4.69 -51.93 -0.24 1.84 16 11 O -0.35 -8.74 9.07 -43.33 -0.39 -9.14 16 12 C 0.49 11.60 7.62 34.46 0.26 11.86 16 13 O -0.51 -13.19 15.12 -24.91 -0.38 -13.56 16 14 C -0.14 -2.68 5.89 -104.74 -0.62 -3.30 16 15 C -0.03 -0.42 9.59 -39.25 -0.38 -0.80 16 16 C -0.16 -2.00 10.05 -39.60 -0.40 -2.40 16 17 C -0.04 -0.50 10.02 -39.63 -0.40 -0.90 16 18 C -0.20 -2.57 6.27 -104.12 -0.65 -3.22 16 19 C 0.17 2.87 6.73 -38.42 -0.26 2.61 16 20 O -0.28 -4.84 10.14 -35.71 -0.36 -5.20 16 21 C 0.04 0.48 8.00 38.06 0.30 0.79 16 22 C -0.11 -0.99 7.12 -26.50 -0.19 -1.18 16 23 C 0.03 0.80 6.17 -35.62 -0.22 0.58 16 24 C -0.23 -4.99 10.81 -39.70 -0.43 -5.42 16 25 C -0.21 -3.86 10.91 -39.70 -0.43 -4.30 16 26 C -0.07 -1.31 12.09 29.41 0.36 -0.95 16 27 O -0.17 -3.79 10.64 2.49 0.03 -3.77 16 28 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.15 2.40 7.59 -52.48 -0.40 2.00 16 30 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.14 2.90 8.06 -52.49 -0.42 2.47 16 37 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 38 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 336.20 15.07 5.07 5.07 Total: -1.00 -34.60 336.20 -7.38 -41.98 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -4.02 Total: 3.66 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -3.52 Total: -12.09 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.77 Total: -23.92 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.11 Total: -31.66 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.57 Total: 16.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.60 -7.38 -41.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.571 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds