Wall clock time and date at job start Tue Mar 31 2020 10:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99576 * 2 1 4 4 H 1.48495 * 109.47624 * 264.87017 * 3 2 1 5 5 H 1.48501 * 109.47084 * 24.87369 * 3 2 1 6 6 H 1.48504 * 109.46921 * 144.87028 * 3 2 1 7 7 C 1.37870 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00265 * 359.92438 * 7 2 1 9 9 C 1.50704 * 120.00077 * 179.97438 * 7 2 1 10 10 H 1.08996 * 109.46868 * 332.47454 * 9 7 2 11 11 O 1.45206 * 109.47111 * 92.47583 * 9 7 2 12 12 C 1.34754 * 116.99512 * 210.00312 * 11 9 7 13 13 O 1.21506 * 120.00394 * 359.97438 * 12 11 9 14 14 C 1.47394 * 119.99757 * 180.02562 * 12 11 9 15 15 C 1.39594 * 120.06033 * 0.02562 * 14 12 11 16 16 C 1.37757 * 120.18116 * 179.97438 * 15 14 12 17 17 C 1.38662 * 119.98651 * 359.87119 * 16 15 14 18 18 C 1.37663 * 120.33097 * 359.96287 * 17 16 15 19 19 C 1.38874 * 120.87214 * 0.35518 * 18 17 16 20 20 O 1.36089 * 111.40585 * 179.11623 * 19 18 17 21 21 C 1.43777 * 109.13261 * 18.72798 * 20 19 18 22 22 C 1.51666 * 132.13832 * 180.39352 * 18 17 16 23 23 C 1.50701 * 109.47227 * 212.47547 * 9 7 2 24 24 C 1.34515 * 125.78972 * 96.13280 * 23 9 7 25 25 C 1.41388 * 106.83656 * 179.97438 * 24 23 9 26 26 C 1.34510 * 106.84240 * 0.02562 * 25 24 23 27 27 O 1.34298 * 108.42170 * 359.73477 * 26 25 24 28 28 H 0.96995 * 120.00037 * 359.97438 * 1 2 3 29 29 H 1.08004 * 119.90768 * 359.97438 * 15 14 12 30 30 H 1.08002 * 120.01162 * 179.86470 * 16 15 14 31 31 H 1.07997 * 119.83845 * 179.97438 * 17 16 15 32 32 H 1.09000 * 110.75001 * 214.11061 * 21 20 19 33 33 H 1.09000 * 110.75113 * 90.93908 * 21 20 19 34 34 H 1.09001 * 110.95020 * 46.44362 * 22 18 17 35 35 H 1.09000 * 110.98108 * 282.75470 * 22 18 17 36 36 H 1.07998 * 126.58166 * 0.03928 * 24 23 9 37 37 H 1.07998 * 126.57407 * 179.97438 * 25 24 23 38 38 H 1.08000 * 125.78608 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6050 1.9840 -1.3944 5 1 1.3964 2.6815 0.5889 6 1 3.4882 1.4740 0.8057 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 0.0003 9 6 3.5116 -1.1939 -0.0011 10 1 3.8747 -0.2825 -0.4760 11 8 3.9962 -1.2533 1.3664 12 6 5.1805 -0.6634 1.6219 13 8 5.7918 -0.1148 0.7265 14 6 5.7350 -0.6846 2.9874 15 6 5.0346 -1.3158 4.0168 16 6 5.5507 -1.3376 5.2938 17 6 6.7705 -0.7336 5.5587 18 6 7.4715 -0.1112 4.5506 19 6 6.9712 -0.0688 3.2558 20 8 7.8076 0.6075 2.4220 21 6 9.1132 0.6783 3.0200 22 6 8.8043 0.6123 4.5346 23 6 4.0138 -2.3923 -0.7645 24 6 4.3854 -2.4024 -2.0572 25 6 4.7854 -3.7247 -2.3580 26 6 4.6337 -4.4436 -1.2313 27 8 4.1713 -3.6303 -0.2679 28 1 -0.4850 0.8400 0.0004 29 1 4.0854 -1.7885 3.8114 30 1 5.0055 -1.8249 6.0886 31 1 7.1727 -0.7517 6.5608 32 1 9.6037 1.6180 2.7663 33 1 9.7250 -0.1701 2.7133 34 1 9.5657 0.0384 5.0629 35 1 8.7105 1.6128 4.9570 36 1 4.3803 -1.5616 -2.7350 37 1 5.1432 -4.0880 -3.3101 38 1 4.8518 -5.4954 -1.1191 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350312699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:42 Heat of formation + Delta-G solvation = -90.397826 kcal Electronic energy + Delta-G solvation = -25895.863504 eV Core-core repulsion = 22056.095040 eV Total energy + Delta-G solvation = -3839.768464 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.45360 -42.29238 -40.97189 -38.42458 -37.48591 -35.22807 -33.97293 -33.81768 -32.38435 -31.33051 -30.24624 -28.94126 -25.87683 -24.66856 -23.92003 -22.99126 -22.68143 -21.86065 -21.11693 -19.64693 -18.75635 -18.44949 -18.37044 -17.91718 -17.24022 -17.22098 -16.75225 -16.66718 -16.33882 -15.84586 -15.31123 -14.93715 -14.55880 -14.33051 -14.12488 -14.00015 -13.76526 -13.72237 -13.62130 -13.42087 -13.22329 -13.01357 -12.84016 -12.72018 -12.27324 -12.12854 -11.90152 -11.84971 -11.64037 -11.42995 -11.11833 -10.82115 -10.05972 -9.37595 -9.27061 -8.66854 -6.81474 -0.34300 0.23170 0.81751 1.12416 1.16620 1.29763 1.54840 1.67134 1.87435 2.05631 2.20313 2.21755 2.66543 2.86121 3.37867 3.56791 3.70594 3.92781 3.99369 4.08488 4.12733 4.16718 4.19911 4.27319 4.30897 4.46731 4.56482 4.78031 4.86502 4.88091 4.94308 4.97194 5.01494 5.14070 5.17762 5.24439 5.34110 5.55979 5.60573 5.66741 5.94309 6.05757 6.26564 6.31664 6.85984 6.88958 8.46737 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.005229 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.783328 B = 5353.598600 C = 6239.200748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.922 3.078 4 H -0.253 1.253 5 H -0.254 1.254 6 H -0.280 1.280 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.262 3.738 10 H 0.063 0.937 11 O -0.360 6.360 12 C 0.483 3.517 13 O -0.547 6.547 14 C -0.185 4.185 15 C -0.043 4.043 16 C -0.149 4.149 17 C -0.023 4.023 18 C -0.190 4.190 19 C 0.140 3.860 20 O -0.321 6.321 21 C 0.030 3.970 22 C -0.093 4.093 23 C -0.018 4.018 24 C -0.232 4.232 25 C -0.213 4.213 26 C -0.057 4.057 27 O -0.191 6.191 28 H 0.284 0.716 29 H 0.138 0.862 30 H 0.174 0.826 31 H 0.180 0.820 32 H 0.129 0.871 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.146 0.854 37 H 0.183 0.817 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.287 -2.227 11.767 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.148 4.148 3 Si 0.745 3.255 4 H -0.177 1.177 5 H -0.178 1.178 6 H -0.205 1.205 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.210 3.790 10 H 0.081 0.919 11 O -0.277 6.277 12 C 0.330 3.670 13 O -0.440 6.440 14 C -0.187 4.187 15 C -0.062 4.062 16 C -0.167 4.167 17 C -0.041 4.041 18 C -0.191 4.191 19 C 0.093 3.907 20 O -0.235 6.235 21 C -0.044 4.044 22 C -0.129 4.129 23 C -0.068 4.068 24 C -0.251 4.251 25 C -0.232 4.232 26 C -0.124 4.124 27 O -0.088 6.088 28 H 0.094 0.906 29 H 0.155 0.845 30 H 0.191 0.809 31 H 0.198 0.802 32 H 0.147 0.853 33 H 0.105 0.895 34 H 0.147 0.853 35 H 0.127 0.873 36 H 0.164 0.836 37 H 0.200 0.800 38 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 18.148 -1.946 11.524 21.586 hybrid contribution -0.236 0.824 -0.985 1.305 sum 17.913 -1.122 10.540 20.814 Atomic orbital electron populations 1.69912 1.07338 1.29641 1.45950 1.25662 0.95552 1.01914 0.91691 0.86123 0.78943 0.80070 0.80386 1.17725 1.17754 1.20495 1.20763 0.87360 0.94692 1.52690 0.92750 1.19159 0.93106 0.89517 0.77205 0.91912 1.87046 1.34204 1.69908 1.36522 1.21921 0.79930 0.75056 0.90074 1.90722 1.60713 1.44054 1.48474 1.18894 0.97470 1.10482 0.91829 1.21455 0.98655 0.93698 0.92366 1.21465 0.96943 1.02441 0.95844 1.21070 0.92319 0.91077 0.99619 1.21255 1.00736 1.05371 0.91730 1.19886 0.90361 0.89760 0.90691 1.87039 1.22118 1.68957 1.45337 1.24342 0.81967 1.05371 0.92682 1.21880 0.92884 1.02190 0.95957 1.23025 1.03229 0.85181 0.95411 1.21764 1.07623 1.00426 0.95298 1.22097 1.07447 0.92231 1.01389 1.24974 1.02787 0.98036 0.86573 1.84024 1.65795 1.18600 1.40333 0.90589 0.84453 0.80852 0.80224 0.85261 0.89501 0.85263 0.87289 0.83577 0.80004 0.73668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.64 13.96 21.45 0.30 -53.34 16 2 C 0.06 3.41 5.47 84.65 0.46 3.87 16 3 Si 0.92 46.65 26.88 68.60 1.84 48.50 16 4 H -0.25 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.25 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.28 -15.12 6.80 99.48 0.68 -14.44 16 7 C -0.52 -31.57 9.23 25.60 0.24 -31.33 16 8 H 0.05 3.59 8.06 -2.91 -0.02 3.57 16 9 C 0.26 14.68 1.92 29.10 0.06 14.73 16 10 H 0.06 3.63 4.69 -2.39 -0.01 3.62 16 11 O -0.36 -19.47 9.07 -54.07 -0.49 -19.96 16 12 C 0.48 24.58 7.62 70.23 0.53 25.12 16 13 O -0.55 -30.33 15.12 25.21 0.38 -29.95 16 14 C -0.18 -7.50 5.89 -19.94 -0.12 -7.62 16 15 C -0.04 -1.42 9.59 22.48 0.22 -1.20 16 16 C -0.15 -3.20 10.05 22.26 0.22 -2.98 16 17 C -0.02 -0.41 10.02 22.24 0.22 -0.19 16 18 C -0.19 -4.37 6.27 -19.54 -0.12 -4.50 16 19 C 0.14 4.88 6.73 23.02 0.16 5.04 16 20 O -0.32 -11.42 10.14 -79.57 -0.81 -12.23 16 21 C 0.03 0.60 8.00 72.57 0.58 1.18 16 22 C -0.09 -1.34 7.12 30.74 0.22 -1.13 16 23 C -0.02 -0.91 6.17 24.83 0.15 -0.76 16 24 C -0.23 -10.39 10.81 22.19 0.24 -10.15 16 25 C -0.21 -7.51 10.91 22.19 0.24 -7.27 16 26 C -0.06 -1.99 12.09 66.97 0.81 -1.18 16 27 O -0.19 -8.90 10.64 0.62 0.01 -8.90 16 28 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.14 4.68 7.59 -2.91 -0.02 4.66 16 30 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.15 6.20 8.06 -2.91 -0.02 6.18 16 37 H 0.18 4.74 8.06 -2.91 -0.02 4.72 16 38 H 0.25 5.45 8.06 -2.91 -0.02 5.42 16 Total: -1.00 -85.37 336.20 6.41 -78.95 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.07 Total: 15.28 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 4.11 Total: -18.36 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.30 Total: -53.34 kcal Atomic # 8 Polarization: -70.13 SS G_CDS: -0.91 Total: -71.04 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.84 Total: 48.50 kcal Total: -85.37 6.41 -78.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.446 kcal (2) G-P(sol) polarization free energy of solvation -85.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds