Wall clock time and date at job start Tue Mar 31 2020 10:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47236 * 90.00768 * 3 2 1 5 5 H 1.48507 * 109.47227 * 210.00407 * 3 2 1 6 6 H 1.48498 * 109.47106 * 330.00188 * 3 2 1 7 7 C 1.40029 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00303 * 16.06690 * 7 2 1 9 9 C 1.41339 * 119.99858 * 196.06295 * 7 2 1 10 10 C 1.40620 * 119.78721 * 188.92610 * 9 7 2 11 11 C 1.38306 * 119.13580 * 180.02562 * 10 9 7 12 12 C 1.38690 * 118.67006 * 0.02562 * 11 10 9 13 13 C 1.39658 * 119.49299 * 359.97438 * 12 11 10 14 14 N 1.39165 * 119.57672 * 180.02562 * 13 12 11 15 15 C 1.34782 * 119.99554 * 18.91970 * 14 13 12 16 16 O 1.21487 * 120.00222 * 5.59636 * 15 14 13 17 17 C 1.48270 * 119.99496 * 185.58963 * 15 14 13 18 18 C 1.39706 * 119.99921 * 179.73016 * 17 15 14 19 19 N 1.31781 * 120.00170 * 179.71496 * 18 17 15 20 20 C 1.32983 * 119.99534 * 0.55999 * 19 18 17 21 21 C 1.48215 * 119.99916 * 179.73477 * 20 19 18 22 22 O 1.21409 * 120.00178 * 179.97438 * 21 20 19 23 23 O 1.34669 * 119.99974 * 359.97438 * 21 20 19 24 24 C 1.39652 * 120.00328 * 359.70982 * 20 19 18 25 25 N 1.31836 * 119.99672 * 0.02562 * 24 20 19 26 26 N 1.31945 * 120.84758 * 359.72159 * 13 12 11 27 27 H 0.96992 * 120.00047 * 174.92887 * 1 2 3 28 28 H 1.08010 * 120.42998 * 359.97438 * 10 9 7 29 29 H 1.07995 * 120.66624 * 180.02562 * 11 10 9 30 30 H 1.07998 * 120.24974 * 179.97438 * 12 11 10 31 31 H 0.96994 * 120.00088 * 198.92959 * 14 13 12 32 32 H 1.08006 * 119.99889 * 0.02562 * 18 17 15 33 33 H 0.96698 * 116.99875 * 179.97438 * 23 21 20 34 34 H 1.07998 * 120.00562 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4891 2.0463 1.4001 5 1 3.5390 1.4402 -0.7002 6 1 1.4389 2.6527 -0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 1.4992 -2.1297 -0.2598 9 6 3.3795 -1.2368 0.3381 10 6 4.1234 -2.4162 0.1562 11 6 5.4649 -2.4248 0.4926 12 6 6.0311 -1.2650 1.0001 13 6 5.2395 -0.1252 1.1575 14 7 5.8060 1.0397 1.6661 15 6 7.1438 1.2023 1.6472 16 8 7.8480 0.3801 1.0958 17 6 7.7560 2.3848 2.2994 18 6 9.1432 2.5506 2.2848 19 7 9.6870 3.6044 2.8595 20 6 8.9161 4.5044 3.4630 21 6 9.5281 5.6867 4.1146 22 8 8.8243 6.5086 4.6652 23 8 10.8648 5.8492 4.0958 24 6 7.5299 4.3359 3.4825 25 7 6.9856 3.2842 2.9030 26 7 3.9628 -0.1370 0.8246 27 1 -0.4850 -0.8367 -0.0742 28 1 3.6530 -3.3040 -0.2402 29 1 6.0596 -3.3169 0.3627 30 1 7.0762 -1.2433 1.2716 31 1 5.2381 1.7345 2.0342 32 1 9.7695 1.8175 1.7981 33 1 11.2175 6.6359 4.5336 34 1 6.9039 5.0665 3.9730 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574479317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:36 Heat of formation + Delta-G solvation = -57.750234 kcal Electronic energy + Delta-G solvation = -24262.470447 eV Core-core repulsion = 20352.870097 eV Total energy + Delta-G solvation = -3909.600350 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.085 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.90811 -41.68316 -40.90894 -39.81628 -37.31600 -36.51285 -35.94528 -35.31035 -33.39557 -32.97466 -31.38782 -28.25723 -27.19696 -26.06089 -24.68713 -23.64021 -23.27609 -21.85200 -20.53279 -19.90081 -19.63810 -18.85080 -18.64295 -17.84914 -17.35987 -17.11971 -16.89014 -16.67771 -16.20777 -16.07249 -15.79807 -15.37109 -15.24293 -14.86473 -14.40896 -14.27561 -14.19057 -13.73773 -13.19076 -13.06783 -12.87182 -12.77414 -12.65647 -12.24431 -12.21339 -11.89128 -11.67880 -11.28628 -11.06252 -10.93568 -10.62464 -10.40428 -9.86752 -9.33261 -9.26842 -6.80148 -1.51056 -0.38066 0.40628 0.74990 0.94771 1.37702 1.52110 1.52622 1.60536 1.69552 1.96604 2.36597 2.38575 2.45106 2.62462 2.68836 2.93301 3.36403 3.56135 3.58181 4.05554 4.07172 4.28950 4.37606 4.62303 4.70015 4.72386 4.78368 5.26940 5.29988 5.36820 5.40337 5.57479 5.71362 5.75275 5.90938 6.04935 6.21389 6.38788 6.60239 6.74668 6.80353 7.50337 7.93395 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.003355 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.865196 B = 8343.373657 C = 9568.031377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.023 3.977 3 Si 1.170 2.830 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.321 1.321 7 C -0.511 4.511 8 H 0.071 0.929 9 C 0.258 3.742 10 C -0.287 4.287 11 C -0.028 4.028 12 C -0.302 4.302 13 C 0.367 3.633 14 N -0.633 5.633 15 C 0.580 3.420 16 O -0.507 6.507 17 C 0.063 3.937 18 C 0.121 3.879 19 N -0.390 5.390 20 C 0.061 3.939 21 C 0.559 3.441 22 O -0.510 6.510 23 O -0.487 6.487 24 C 0.125 3.875 25 N -0.422 5.422 26 N -0.608 5.608 27 H 0.283 0.717 28 H 0.117 0.883 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.423 0.577 32 H 0.214 0.786 33 H 0.441 0.559 34 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.802 10.583 8.034 23.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.195 4.195 3 Si 1.001 2.999 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.253 1.253 7 C -0.543 4.543 8 H 0.090 0.910 9 C 0.133 3.867 10 C -0.309 4.309 11 C -0.052 4.052 12 C -0.326 4.326 13 C 0.136 3.864 14 N -0.278 5.278 15 C 0.365 3.635 16 O -0.381 6.381 17 C -0.079 4.079 18 C -0.041 4.041 19 N -0.107 5.107 20 C -0.081 4.081 21 C 0.400 3.600 22 O -0.398 6.398 23 O -0.300 6.300 24 C -0.036 4.036 25 N -0.139 5.139 26 N -0.333 5.333 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.166 0.834 30 H 0.172 0.828 31 H 0.261 0.739 32 H 0.231 0.769 33 H 0.304 0.696 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 19.203 12.161 7.803 24.032 hybrid contribution -0.212 -2.017 0.132 2.032 sum 18.990 10.145 7.935 22.946 Atomic orbital electron populations 1.70629 1.08530 1.33023 1.32549 1.28342 0.95471 1.07585 0.88084 0.81777 0.71587 0.68573 0.78005 1.20119 1.21831 1.25288 1.20668 0.94171 0.96777 1.42698 0.91039 1.18382 0.93008 0.87289 0.88060 1.21837 0.95694 0.99546 1.13860 1.21353 0.93734 0.97589 0.92509 1.21872 1.02372 0.92737 1.15652 1.18358 0.89450 0.85824 0.92755 1.43084 1.07608 1.19059 1.58085 1.17822 0.81292 0.84880 0.79502 1.90728 1.61731 1.42746 1.42926 1.22159 0.93734 0.94565 0.97481 1.24162 0.91880 0.94719 0.93340 1.68728 1.37937 1.00369 1.03660 1.21590 0.92584 0.94964 0.98932 1.19826 0.81408 0.82900 0.75904 1.90964 1.63748 1.43015 1.42093 1.84611 1.20923 1.51340 1.73110 1.24237 0.92436 0.94177 0.92781 1.68579 1.38834 1.01423 1.05100 1.66132 1.11476 1.30348 1.25366 0.90598 0.86508 0.83404 0.82828 0.73894 0.76929 0.69579 0.76635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.31 13.65 21.84 0.30 -45.01 16 2 C 0.02 1.27 5.51 85.29 0.47 1.74 16 3 Si 1.17 55.99 25.93 68.60 1.78 57.77 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.29 -14.20 6.55 99.48 0.65 -13.55 16 6 H -0.32 -14.90 7.11 99.48 0.71 -14.20 16 7 C -0.51 -28.07 9.51 23.47 0.22 -27.85 16 8 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 9 C 0.26 13.35 6.27 40.21 0.25 13.60 16 10 C -0.29 -13.07 9.83 22.87 0.22 -12.85 16 11 C -0.03 -1.10 10.15 22.39 0.23 -0.87 16 12 C -0.30 -12.30 8.83 22.72 0.20 -12.10 16 13 C 0.37 15.96 7.51 133.27 1.00 16.96 16 14 N -0.63 -22.56 5.39 -310.64 -1.68 -24.24 16 15 C 0.58 17.52 7.66 86.91 0.67 18.18 16 16 O -0.51 -16.69 13.14 -3.67 -0.05 -16.74 16 17 C 0.06 1.45 6.76 42.00 0.28 1.74 16 18 C 0.12 2.26 10.77 85.06 0.92 3.18 16 19 N -0.39 -7.16 10.27 -183.35 -1.88 -9.04 16 20 C 0.06 1.02 6.76 41.97 0.28 1.31 16 21 C 0.56 8.15 8.33 70.47 0.59 8.73 16 22 O -0.51 -9.12 17.13 20.13 0.34 -8.78 16 23 O -0.49 -4.79 13.26 -55.78 -0.74 -5.53 16 24 C 0.13 2.12 10.77 85.03 0.92 3.03 16 25 N -0.42 -9.26 9.71 -183.31 -1.78 -11.04 16 26 N -0.61 -30.13 5.07 -186.41 -0.94 -31.07 16 27 H 0.28 15.03 8.72 -92.71 -0.81 14.23 16 28 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 29 H 0.15 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.15 5.79 5.33 -3.17 -0.02 5.78 16 31 H 0.42 14.17 8.18 -92.71 -0.76 13.41 16 32 H 0.21 3.20 7.65 -2.91 -0.02 3.17 16 33 H 0.44 -0.26 9.11 -74.06 -0.67 -0.94 16 34 H 0.22 2.60 7.64 -2.91 -0.02 2.58 16 Total: -1.00 -67.97 313.77 1.29 -66.68 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -0.31 Total: 12.19 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 6.25 Total: 14.81 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -5.99 Total: -120.40 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.44 Total: -31.05 kcal Atomic # 14 Polarization: 55.99 SS G_CDS: 1.78 Total: 57.77 kcal Total: -67.97 1.29 -66.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.928 kcal (2) G-P(sol) polarization free energy of solvation -67.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds