Wall clock time and date at job start Tue Mar 31 2020 10:23:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 H 1.09000 * 109.46915 * 2 1
4 4 C 1.50691 * 109.47141 * 239.99671 * 2 1 3
5 5 H 1.08011 * 119.99994 * 245.64383 * 4 2 1
6 6 C 1.37871 * 120.00306 * 65.64237 * 4 2 1
7 7 N 1.31519 * 120.00387 * 197.14740 * 6 4 2
8 8 Si 1.86804 * 119.99901 * 17.42761 * 6 4 2
9 9 H 1.48495 * 109.47139 * 179.72427 * 8 6 4
10 10 H 1.48499 * 109.46650 * 299.72174 * 8 6 4
11 11 H 1.48501 * 109.46998 * 59.72245 * 8 6 4
12 12 C 1.50701 * 109.46677 * 119.99709 * 2 1 3
13 13 O 1.20823 * 120.00008 * 120.00691 * 12 2 1
14 14 O 1.34232 * 120.00224 * 299.99590 * 12 2 1
15 15 C 1.45193 * 117.00228 * 180.02562 * 14 12 2
16 16 C 1.50704 * 109.47265 * 180.02562 * 15 14 12
17 17 C 1.38533 * 119.87276 * 269.72965 * 16 15 14
18 18 F 1.35104 * 119.94085 * 359.97438 * 17 16 15
19 19 C 1.38198 * 120.12434 * 179.72598 * 17 16 15
20 20 C 1.39596 * 119.86794 * 0.52058 * 19 17 16
21 21 C 1.47740 * 120.12078 * 179.76973 * 20 19 17
22 22 O 1.21472 * 119.99817 * 179.97438 * 21 20 19
23 23 O 1.34705 * 120.00313 * 359.97438 * 21 20 19
24 24 C 1.39593 * 119.75052 * 359.75367 * 20 19 17
25 25 C 1.38183 * 119.87253 * 359.97438 * 24 20 19
26 26 F 1.35104 * 119.93625 * 180.02562 * 25 24 20
27 27 H 1.08998 * 109.46828 * 306.32149 * 1 2 3
28 28 H 1.08992 * 109.46594 * 66.32055 * 1 2 3
29 29 H 1.08996 * 109.46758 * 186.31975 * 1 2 3
30 30 H 0.97004 * 119.99724 * 355.22179 * 7 6 4
31 31 H 1.08997 * 109.47321 * 300.00748 * 15 14 12
32 32 H 1.09002 * 109.46934 * 60.00207 * 15 14 12
33 33 H 1.07999 * 120.06024 * 180.25328 * 19 17 16
34 34 H 0.96701 * 117.00043 * 179.97438 * 23 21 20
35 35 H 1.08011 * 120.06233 * 180.02562 * 24 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2303
5 1 2.5761 -1.6387 -1.1338
6 6 1.7979 -0.1756 -2.4793
7 7 1.9235 -0.9277 -3.5509
8 14 1.3096 1.6194 -2.6500
9 1 1.1231 1.9472 -4.0862
10 1 0.0394 1.8584 -1.9187
11 1 2.3780 2.4793 -2.0806
12 6 2.0323 -0.7104 1.2305
13 8 2.7270 -1.6927 1.1198
14 8 1.7081 -0.2517 2.4497
15 6 2.2276 -0.9855 3.5897
16 6 1.7625 -0.3289 4.8640
17 6 2.5328 0.6620 5.4506
18 9 3.6984 1.0367 4.8795
19 6 2.1085 1.2715 6.6161
20 6 0.9067 0.8793 7.2081
21 6 0.4504 1.5236 8.4568
22 8 -0.5960 1.1808 8.9698
23 8 1.1946 2.4911 9.0265
24 6 0.1376 -0.1238 6.6156
25 6 0.5690 -0.7222 5.4472
26 9 -0.1746 -1.6927 4.8723
27 1 -0.3633 0.6087 0.8280
28 1 -0.3632 0.4127 -0.9411
29 1 -0.3633 -1.0214 0.1131
30 1 2.2477 -1.8382 -3.4691
31 1 1.8642 -2.0126 3.5570
32 1 3.3171 -0.9844 3.5567
33 1 2.7078 2.0467 7.0703
34 1 0.8548 2.8832 9.8425
35 1 -0.7933 -0.4309 7.0691
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001604061290.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:23:55
Heat of formation + Delta-G solvation = -242.031792 kcal
Electronic energy + Delta-G solvation = -25436.031538 eV
Core-core repulsion = 21035.458203 eV
Total energy + Delta-G solvation = -4400.573336 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 314.084 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-49.40278 -49.39333 -40.95029 -39.89656 -38.89319 -36.67026 -36.06571 -33.99008
-32.84336 -31.22223 -30.95876 -27.90093 -24.92624 -24.38501 -23.49439 -22.82720
-21.63943 -19.80131 -19.17321 -18.44987 -17.67889 -17.51904 -16.93193 -16.78707
-16.45714 -16.39105 -16.01821 -15.98291 -15.66895 -15.64824 -15.22000 -14.53661
-14.00895 -13.74560 -13.33479 -13.21101 -12.84077 -12.74329 -12.57360 -12.34318
-12.09293 -11.96414 -11.88254 -11.56340 -11.28223 -11.17927 -10.56345 -10.36388
-10.27284 -9.84482 -9.75396 -9.31831 -9.26340 -8.96783 -8.29510 -6.56380
-4.16141 -0.23651 0.41968 1.75619 2.26136 2.77493 3.05954 3.32210
3.34941 3.38222 3.39388 3.55784 3.72244 4.07311 4.10435 4.37672
4.41664 4.43759 4.89968 5.00239 5.18357 5.22170 5.29877 5.35112
5.38908 5.54487 5.78280 5.86842 6.08797 6.17338 6.40121 6.46257
6.77884 6.97794 7.16905 7.27612 7.74507 8.36495 8.61857 8.89999
9.53299 10.86470
Molecular weight = 314.08amu
Principal moments of inertia in cm(-1)
A = 0.022303 B = 0.003101 C = 0.003063
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1255.144568 B = 9028.471924 C = 9139.098236
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.034 3.966
3 H 0.057 0.943
4 C -0.602 4.602
5 H 0.076 0.924
6 C 0.035 3.965
7 N -0.898 5.898
8 Si 1.041 2.959
9 H -0.282 1.282
10 H -0.271 1.271
11 H -0.281 1.281
12 C 0.474 3.526
13 O -0.503 6.503
14 O -0.360 6.360
15 C 0.097 3.903
16 C -0.124 4.124
17 C 0.144 3.856
18 F -0.115 7.115
19 C -0.109 4.109
20 C -0.068 4.068
21 C 0.534 3.466
22 O -0.501 6.501
23 O -0.507 6.507
24 C -0.103 4.103
25 C 0.147 3.853
26 F -0.114 7.114
27 H 0.037 0.963
28 H 0.068 0.932
29 H 0.048 0.952
30 H 0.271 0.729
31 H 0.088 0.912
32 H 0.088 0.912
33 H 0.162 0.838
34 H 0.420 0.580
35 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.020 6.804 25.629 26.594
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.014 3.986
3 H 0.075 0.925
4 C -0.639 4.639
5 H 0.094 0.906
6 C -0.171 4.171
7 N -0.531 5.531
8 Si 0.868 3.132
9 H -0.207 1.207
10 H -0.197 1.197
11 H -0.207 1.207
12 C 0.317 3.683
13 O -0.388 6.388
14 O -0.278 6.278
15 C 0.023 3.977
16 C -0.126 4.126
17 C 0.124 3.876
18 F -0.093 7.093
19 C -0.128 4.128
20 C -0.070 4.070
21 C 0.378 3.622
22 O -0.390 6.390
23 O -0.319 6.319
24 C -0.122 4.122
25 C 0.127 3.873
26 F -0.092 7.092
27 H 0.056 0.944
28 H 0.087 0.913
29 H 0.067 0.933
30 H 0.081 0.919
31 H 0.106 0.894
32 H 0.106 0.894
33 H 0.180 0.820
34 H 0.280 0.720
35 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges -2.358 7.324 24.221 25.414
hybrid contribution 0.487 -1.223 1.532 2.020
sum -1.871 6.101 25.753 26.532
Atomic orbital electron populations
1.22167 0.95958 1.00986 1.01208 1.19092 0.94467 0.97082 0.87924
0.92543 1.21963 1.41438 1.11055 0.89450 0.90573 1.25761 0.94533
1.05087 0.91707 1.70847 1.40972 1.10146 1.31136 0.84112 0.77281
0.75188 0.76596 1.20720 1.19724 1.20670 1.24883 0.76830 0.83381
0.83195 1.90538 1.35613 1.26243 1.86383 1.86679 1.70535 1.55669
1.14959 1.21447 0.99974 0.95377 0.80884 1.19992 0.95254 0.99031
0.98325 1.16978 0.83547 0.94560 0.92531 1.91606 1.44127 1.89721
1.83889 1.21450 0.96456 1.00686 0.94241 1.18472 0.95843 0.98348
0.94296 1.20446 0.81159 0.77019 0.83618 1.90939 1.23359 1.61810
1.62900 1.84535 1.53102 1.50317 1.43954 1.21207 1.01482 0.95445
0.94093 1.16858 0.89136 0.89049 0.92268 1.91611 1.74817 1.59142
1.83641 0.94400 0.91287 0.93279 0.91899 0.89419 0.89378 0.82008
0.72031 0.82065
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.12 8.80 37.16 0.33 -2.79 16
2 C 0.03 0.82 2.32 -92.92 -0.22 0.60 16
3 H 0.06 1.30 6.80 -51.93 -0.35 0.94 16
4 C -0.60 -17.16 8.63 -34.45 -0.30 -17.46 16
5 H 0.08 2.43 7.02 -52.48 -0.37 2.06 16
6 C 0.03 0.99 5.29 -17.82 -0.09 0.90 16
7 N -0.90 -27.36 13.70 55.43 0.76 -26.61 16
8 Si 1.04 24.10 26.29 -169.99 -4.47 19.63 16
9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
10 H -0.27 -5.66 5.76 56.52 0.33 -5.33 16
11 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16
12 C 0.47 10.85 7.25 36.01 0.26 11.11 16
13 O -0.50 -12.79 15.22 -18.75 -0.29 -13.07 16
14 O -0.36 -6.86 10.13 -39.26 -0.40 -7.26 16
15 C 0.10 1.50 5.23 36.01 0.19 1.69 16
16 C -0.12 -1.53 5.54 -104.40 -0.58 -2.11 16
17 C 0.14 1.55 7.23 -39.49 -0.29 1.26 16
18 F -0.12 -1.39 16.45 2.25 0.04 -1.35 16
19 C -0.11 -0.90 9.59 -39.09 -0.37 -1.28 16
20 C -0.07 -0.58 5.87 -105.00 -0.62 -1.19 16
21 C 0.53 4.21 8.27 34.61 0.29 4.50 16
22 O -0.50 -5.28 17.13 -19.24 -0.33 -5.61 16
23 O -0.51 -2.46 12.68 -40.51 -0.51 -2.97 16
24 C -0.10 -0.95 9.57 -39.10 -0.37 -1.33 16
25 C 0.15 1.65 7.23 -39.49 -0.29 1.36 16
26 F -0.11 -1.44 16.46 2.25 0.04 -1.40 16
27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
28 H 0.07 1.50 4.88 -51.93 -0.25 1.25 16
29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16
30 H 0.27 8.31 8.73 -40.82 -0.36 7.95 16
31 H 0.09 1.33 7.62 -51.93 -0.40 0.94 16
32 H 0.09 1.33 7.61 -51.93 -0.40 0.93 16
33 H 0.16 0.98 7.61 -52.49 -0.40 0.58 16
34 H 0.42 0.17 9.11 45.56 0.42 0.58 16
35 H 0.16 1.31 7.65 -52.48 -0.40 0.91 16
LS Contribution 322.14 15.07 4.85 4.85
Total: -1.00 -34.15 322.14 -4.59 -38.74
By element:
Atomic # 1 Polarization: 1.99 SS G_CDS: -2.22 Total: -0.23 kcal
Atomic # 6 Polarization: -2.67 SS G_CDS: -2.06 Total: -4.73 kcal
Atomic # 7 Polarization: -27.36 SS G_CDS: 0.76 Total: -26.61 kcal
Atomic # 8 Polarization: -27.38 SS G_CDS: -1.53 Total: -28.91 kcal
Atomic # 9 Polarization: -2.83 SS G_CDS: 0.07 Total: -2.76 kcal
Atomic # 14 Polarization: 24.10 SS G_CDS: -4.47 Total: 19.63 kcal
Total LS contribution 4.85 Total: 4.85 kcal
Total: -34.15 -4.59 -38.74 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001604061290.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -203.296 kcal
(2) G-P(sol) polarization free energy of solvation -34.146 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.441 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.591 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal
(6) G-S(sol) free energy of system = (1) + (5) -242.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds