Wall clock time and date at job start Tue Mar 31 2020 10:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50691 * 109.47141 * 239.99671 * 2 1 3 5 5 H 1.08011 * 119.99994 * 245.64383 * 4 2 1 6 6 C 1.37871 * 120.00306 * 65.64237 * 4 2 1 7 7 N 1.31519 * 120.00387 * 197.14740 * 6 4 2 8 8 Si 1.86804 * 119.99901 * 17.42761 * 6 4 2 9 9 H 1.48495 * 109.47139 * 179.72427 * 8 6 4 10 10 H 1.48499 * 109.46650 * 299.72174 * 8 6 4 11 11 H 1.48501 * 109.46998 * 59.72245 * 8 6 4 12 12 C 1.50701 * 109.46677 * 119.99709 * 2 1 3 13 13 O 1.20823 * 120.00008 * 120.00691 * 12 2 1 14 14 O 1.34232 * 120.00224 * 299.99590 * 12 2 1 15 15 C 1.45193 * 117.00228 * 180.02562 * 14 12 2 16 16 C 1.50704 * 109.47265 * 180.02562 * 15 14 12 17 17 C 1.38533 * 119.87276 * 269.72965 * 16 15 14 18 18 F 1.35104 * 119.94085 * 359.97438 * 17 16 15 19 19 C 1.38198 * 120.12434 * 179.72598 * 17 16 15 20 20 C 1.39596 * 119.86794 * 0.52058 * 19 17 16 21 21 C 1.47740 * 120.12078 * 179.76973 * 20 19 17 22 22 O 1.21472 * 119.99817 * 179.97438 * 21 20 19 23 23 O 1.34705 * 120.00313 * 359.97438 * 21 20 19 24 24 C 1.39593 * 119.75052 * 359.75367 * 20 19 17 25 25 C 1.38183 * 119.87253 * 359.97438 * 24 20 19 26 26 F 1.35104 * 119.93625 * 180.02562 * 25 24 20 27 27 H 1.08998 * 109.46828 * 306.32149 * 1 2 3 28 28 H 1.08992 * 109.46594 * 66.32055 * 1 2 3 29 29 H 1.08996 * 109.46758 * 186.31975 * 1 2 3 30 30 H 0.97004 * 119.99724 * 355.22179 * 7 6 4 31 31 H 1.08997 * 109.47321 * 300.00748 * 15 14 12 32 32 H 1.09002 * 109.46934 * 60.00207 * 15 14 12 33 33 H 1.07999 * 120.06024 * 180.25328 * 19 17 16 34 34 H 0.96701 * 117.00043 * 179.97438 * 23 21 20 35 35 H 1.08011 * 120.06233 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5761 -1.6387 -1.1338 6 6 1.7979 -0.1756 -2.4793 7 7 1.9235 -0.9277 -3.5509 8 14 1.3096 1.6194 -2.6500 9 1 1.1231 1.9472 -4.0862 10 1 0.0394 1.8584 -1.9187 11 1 2.3780 2.4793 -2.0806 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7081 -0.2517 2.4497 15 6 2.2276 -0.9855 3.5897 16 6 1.7625 -0.3289 4.8640 17 6 2.5328 0.6620 5.4506 18 9 3.6984 1.0367 4.8795 19 6 2.1085 1.2715 6.6161 20 6 0.9067 0.8793 7.2081 21 6 0.4504 1.5236 8.4568 22 8 -0.5960 1.1808 8.9698 23 8 1.1946 2.4911 9.0265 24 6 0.1376 -0.1238 6.6156 25 6 0.5690 -0.7222 5.4472 26 9 -0.1746 -1.6927 4.8723 27 1 -0.3633 0.6087 0.8280 28 1 -0.3632 0.4127 -0.9411 29 1 -0.3633 -1.0214 0.1131 30 1 2.2477 -1.8382 -3.4691 31 1 1.8642 -2.0126 3.5570 32 1 3.3171 -0.9844 3.5567 33 1 2.7078 2.0467 7.0703 34 1 0.8548 2.8832 9.8425 35 1 -0.7933 -0.4309 7.0691 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061290.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:55 Heat of formation + Delta-G solvation = -242.031792 kcal Electronic energy + Delta-G solvation = -25436.031538 eV Core-core repulsion = 21035.458203 eV Total energy + Delta-G solvation = -4400.573336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.084 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.40278 -49.39333 -40.95029 -39.89656 -38.89319 -36.67026 -36.06571 -33.99008 -32.84336 -31.22223 -30.95876 -27.90093 -24.92624 -24.38501 -23.49439 -22.82720 -21.63943 -19.80131 -19.17321 -18.44987 -17.67889 -17.51904 -16.93193 -16.78707 -16.45714 -16.39105 -16.01821 -15.98291 -15.66895 -15.64824 -15.22000 -14.53661 -14.00895 -13.74560 -13.33479 -13.21101 -12.84077 -12.74329 -12.57360 -12.34318 -12.09293 -11.96414 -11.88254 -11.56340 -11.28223 -11.17927 -10.56345 -10.36388 -10.27284 -9.84482 -9.75396 -9.31831 -9.26340 -8.96783 -8.29510 -6.56380 -4.16141 -0.23651 0.41968 1.75619 2.26136 2.77493 3.05954 3.32210 3.34941 3.38222 3.39388 3.55784 3.72244 4.07311 4.10435 4.37672 4.41664 4.43759 4.89968 5.00239 5.18357 5.22170 5.29877 5.35112 5.38908 5.54487 5.78280 5.86842 6.08797 6.17338 6.40121 6.46257 6.77884 6.97794 7.16905 7.27612 7.74507 8.36495 8.61857 8.89999 9.53299 10.86470 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.003101 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.144568 B = 9028.471924 C = 9139.098236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.034 3.966 3 H 0.057 0.943 4 C -0.602 4.602 5 H 0.076 0.924 6 C 0.035 3.965 7 N -0.898 5.898 8 Si 1.041 2.959 9 H -0.282 1.282 10 H -0.271 1.271 11 H -0.281 1.281 12 C 0.474 3.526 13 O -0.503 6.503 14 O -0.360 6.360 15 C 0.097 3.903 16 C -0.124 4.124 17 C 0.144 3.856 18 F -0.115 7.115 19 C -0.109 4.109 20 C -0.068 4.068 21 C 0.534 3.466 22 O -0.501 6.501 23 O -0.507 6.507 24 C -0.103 4.103 25 C 0.147 3.853 26 F -0.114 7.114 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.271 0.729 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.162 0.838 34 H 0.420 0.580 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 6.804 25.629 26.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.075 0.925 4 C -0.639 4.639 5 H 0.094 0.906 6 C -0.171 4.171 7 N -0.531 5.531 8 Si 0.868 3.132 9 H -0.207 1.207 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.317 3.683 13 O -0.388 6.388 14 O -0.278 6.278 15 C 0.023 3.977 16 C -0.126 4.126 17 C 0.124 3.876 18 F -0.093 7.093 19 C -0.128 4.128 20 C -0.070 4.070 21 C 0.378 3.622 22 O -0.390 6.390 23 O -0.319 6.319 24 C -0.122 4.122 25 C 0.127 3.873 26 F -0.092 7.092 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.180 0.820 34 H 0.280 0.720 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.358 7.324 24.221 25.414 hybrid contribution 0.487 -1.223 1.532 2.020 sum -1.871 6.101 25.753 26.532 Atomic orbital electron populations 1.22167 0.95958 1.00986 1.01208 1.19092 0.94467 0.97082 0.87924 0.92543 1.21963 1.41438 1.11055 0.89450 0.90573 1.25761 0.94533 1.05087 0.91707 1.70847 1.40972 1.10146 1.31136 0.84112 0.77281 0.75188 0.76596 1.20720 1.19724 1.20670 1.24883 0.76830 0.83381 0.83195 1.90538 1.35613 1.26243 1.86383 1.86679 1.70535 1.55669 1.14959 1.21447 0.99974 0.95377 0.80884 1.19992 0.95254 0.99031 0.98325 1.16978 0.83547 0.94560 0.92531 1.91606 1.44127 1.89721 1.83889 1.21450 0.96456 1.00686 0.94241 1.18472 0.95843 0.98348 0.94296 1.20446 0.81159 0.77019 0.83618 1.90939 1.23359 1.61810 1.62900 1.84535 1.53102 1.50317 1.43954 1.21207 1.01482 0.95445 0.94093 1.16858 0.89136 0.89049 0.92268 1.91611 1.74817 1.59142 1.83641 0.94400 0.91287 0.93279 0.91899 0.89419 0.89378 0.82008 0.72031 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.80 37.16 0.33 -2.79 16 2 C 0.03 0.82 2.32 -92.92 -0.22 0.60 16 3 H 0.06 1.30 6.80 -51.93 -0.35 0.94 16 4 C -0.60 -17.16 8.63 -34.45 -0.30 -17.46 16 5 H 0.08 2.43 7.02 -52.48 -0.37 2.06 16 6 C 0.03 0.99 5.29 -17.82 -0.09 0.90 16 7 N -0.90 -27.36 13.70 55.43 0.76 -26.61 16 8 Si 1.04 24.10 26.29 -169.99 -4.47 19.63 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.27 -5.66 5.76 56.52 0.33 -5.33 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 12 C 0.47 10.85 7.25 36.01 0.26 11.11 16 13 O -0.50 -12.79 15.22 -18.75 -0.29 -13.07 16 14 O -0.36 -6.86 10.13 -39.26 -0.40 -7.26 16 15 C 0.10 1.50 5.23 36.01 0.19 1.69 16 16 C -0.12 -1.53 5.54 -104.40 -0.58 -2.11 16 17 C 0.14 1.55 7.23 -39.49 -0.29 1.26 16 18 F -0.12 -1.39 16.45 2.25 0.04 -1.35 16 19 C -0.11 -0.90 9.59 -39.09 -0.37 -1.28 16 20 C -0.07 -0.58 5.87 -105.00 -0.62 -1.19 16 21 C 0.53 4.21 8.27 34.61 0.29 4.50 16 22 O -0.50 -5.28 17.13 -19.24 -0.33 -5.61 16 23 O -0.51 -2.46 12.68 -40.51 -0.51 -2.97 16 24 C -0.10 -0.95 9.57 -39.10 -0.37 -1.33 16 25 C 0.15 1.65 7.23 -39.49 -0.29 1.36 16 26 F -0.11 -1.44 16.46 2.25 0.04 -1.40 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 1.50 4.88 -51.93 -0.25 1.25 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.27 8.31 8.73 -40.82 -0.36 7.95 16 31 H 0.09 1.33 7.62 -51.93 -0.40 0.94 16 32 H 0.09 1.33 7.61 -51.93 -0.40 0.93 16 33 H 0.16 0.98 7.61 -52.49 -0.40 0.58 16 34 H 0.42 0.17 9.11 45.56 0.42 0.58 16 35 H 0.16 1.31 7.65 -52.48 -0.40 0.91 16 LS Contribution 322.14 15.07 4.85 4.85 Total: -1.00 -34.15 322.14 -4.59 -38.74 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -2.22 Total: -0.23 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.06 Total: -4.73 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.76 Total: -26.61 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.53 Total: -28.91 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.07 Total: -2.76 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -4.47 Total: 19.63 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.15 -4.59 -38.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061290.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.296 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds