Wall clock time and date at job start Tue Mar 31 2020 10:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.50691 * 109.47141 * 239.99671 * 2 1 3 5 5 H 1.08011 * 119.99994 * 245.64383 * 4 2 1 6 6 C 1.37871 * 120.00306 * 65.64237 * 4 2 1 7 7 N 1.31519 * 120.00387 * 197.14740 * 6 4 2 8 8 Si 1.86804 * 119.99901 * 17.42761 * 6 4 2 9 9 H 1.48495 * 109.47139 * 179.72427 * 8 6 4 10 10 H 1.48499 * 109.46650 * 299.72174 * 8 6 4 11 11 H 1.48501 * 109.46998 * 59.72245 * 8 6 4 12 12 C 1.50701 * 109.46677 * 119.99709 * 2 1 3 13 13 O 1.20823 * 120.00008 * 120.00691 * 12 2 1 14 14 O 1.34232 * 120.00224 * 299.99590 * 12 2 1 15 15 C 1.45193 * 117.00228 * 180.02562 * 14 12 2 16 16 C 1.50704 * 109.47265 * 180.02562 * 15 14 12 17 17 C 1.38533 * 119.87276 * 269.72965 * 16 15 14 18 18 F 1.35104 * 119.94085 * 359.97438 * 17 16 15 19 19 C 1.38198 * 120.12434 * 179.72598 * 17 16 15 20 20 C 1.39596 * 119.86794 * 0.52058 * 19 17 16 21 21 C 1.47740 * 120.12078 * 179.76973 * 20 19 17 22 22 O 1.21472 * 119.99817 * 179.97438 * 21 20 19 23 23 O 1.34705 * 120.00313 * 359.97438 * 21 20 19 24 24 C 1.39593 * 119.75052 * 359.75367 * 20 19 17 25 25 C 1.38183 * 119.87253 * 359.97438 * 24 20 19 26 26 F 1.35104 * 119.93625 * 180.02562 * 25 24 20 27 27 H 1.08998 * 109.46828 * 306.32149 * 1 2 3 28 28 H 1.08992 * 109.46594 * 66.32055 * 1 2 3 29 29 H 1.08996 * 109.46758 * 186.31975 * 1 2 3 30 30 H 0.97004 * 119.99724 * 355.22179 * 7 6 4 31 31 H 1.08997 * 109.47321 * 300.00748 * 15 14 12 32 32 H 1.09002 * 109.46934 * 60.00207 * 15 14 12 33 33 H 1.07999 * 120.06024 * 180.25328 * 19 17 16 34 34 H 0.96701 * 117.00043 * 179.97438 * 23 21 20 35 35 H 1.08011 * 120.06233 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5761 -1.6387 -1.1338 6 6 1.7979 -0.1756 -2.4793 7 7 1.9235 -0.9277 -3.5509 8 14 1.3096 1.6194 -2.6500 9 1 1.1231 1.9472 -4.0862 10 1 0.0394 1.8584 -1.9187 11 1 2.3780 2.4793 -2.0806 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1198 14 8 1.7081 -0.2517 2.4497 15 6 2.2276 -0.9855 3.5897 16 6 1.7625 -0.3289 4.8640 17 6 2.5328 0.6620 5.4506 18 9 3.6984 1.0367 4.8795 19 6 2.1085 1.2715 6.6161 20 6 0.9067 0.8793 7.2081 21 6 0.4504 1.5236 8.4568 22 8 -0.5960 1.1808 8.9698 23 8 1.1946 2.4911 9.0265 24 6 0.1376 -0.1238 6.6156 25 6 0.5690 -0.7222 5.4472 26 9 -0.1746 -1.6927 4.8723 27 1 -0.3633 0.6087 0.8280 28 1 -0.3632 0.4127 -0.9411 29 1 -0.3633 -1.0214 0.1131 30 1 2.2477 -1.8382 -3.4691 31 1 1.8642 -2.0126 3.5570 32 1 3.3171 -0.9844 3.5567 33 1 2.7078 2.0467 7.0703 34 1 0.8548 2.8832 9.8425 35 1 -0.7933 -0.4309 7.0691 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061290.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:54 Heat of formation + Delta-G solvation = -264.716021 kcal Electronic energy + Delta-G solvation = -25437.015200 eV Core-core repulsion = 21035.458203 eV Total energy + Delta-G solvation = -4401.556998 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.084 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.31259 -50.28067 -41.67845 -41.47400 -39.73168 -37.71834 -37.18707 -36.00991 -33.91895 -33.18291 -31.73301 -28.94060 -26.89788 -25.58781 -24.44536 -24.16029 -22.42723 -21.61678 -19.86720 -19.61733 -19.16529 -18.60059 -18.48441 -17.91595 -17.44489 -17.29594 -17.14763 -16.84956 -16.66005 -16.55943 -16.48875 -15.71493 -15.44572 -14.96415 -14.70805 -14.44388 -14.34558 -13.98368 -13.90516 -13.43871 -13.32902 -13.24115 -13.06567 -12.91429 -12.61745 -12.39967 -12.07462 -11.95112 -11.89367 -11.61383 -11.29297 -11.05211 -10.50380 -10.40681 -10.09196 -8.85652 -6.46457 -1.03064 -0.34840 1.00959 1.24418 1.50081 1.58752 1.68101 1.72621 1.79647 2.21815 2.50044 2.57588 2.92484 3.02248 3.04483 3.22203 3.68364 3.70472 3.94300 3.98958 4.13414 4.27576 4.36106 4.43680 4.46906 4.58032 4.65786 4.79359 4.80127 5.02700 5.22060 5.29284 5.42778 5.46600 5.71147 5.99606 6.50927 6.83697 6.86139 7.33971 8.56468 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.003101 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.144568 B = 9028.471924 C = 9139.098236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.025 3.975 3 H 0.080 0.920 4 C -0.612 4.612 5 H 0.022 0.978 6 C -0.014 4.014 7 N -0.929 5.929 8 Si 1.081 2.919 9 H -0.287 1.287 10 H -0.226 1.226 11 H -0.258 1.258 12 C 0.478 3.522 13 O -0.541 6.541 14 O -0.350 6.350 15 C 0.094 3.906 16 C -0.140 4.140 17 C 0.137 3.863 18 F -0.125 7.125 19 C -0.085 4.085 20 C -0.061 4.061 21 C 0.546 3.454 22 O -0.530 6.530 23 O -0.495 6.495 24 C -0.093 4.093 25 C 0.138 3.862 26 F -0.127 7.127 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.251 0.749 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.191 0.809 34 H 0.442 0.558 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 10.057 28.507 30.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.005 3.995 3 H 0.097 0.903 4 C -0.649 4.649 5 H 0.041 0.959 6 C -0.212 4.212 7 N -0.564 5.564 8 Si 0.899 3.101 9 H -0.213 1.213 10 H -0.150 1.150 11 H -0.183 1.183 12 C 0.323 3.677 13 O -0.429 6.429 14 O -0.268 6.268 15 C 0.020 3.980 16 C -0.142 4.142 17 C 0.118 3.882 18 F -0.103 7.103 19 C -0.104 4.104 20 C -0.063 4.063 21 C 0.390 3.610 22 O -0.421 6.421 23 O -0.310 6.310 24 C -0.111 4.111 25 C 0.118 3.882 26 F -0.105 7.105 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.208 0.792 34 H 0.305 0.695 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.454 10.588 27.170 29.364 hybrid contribution 0.902 -2.270 0.832 2.581 sum -2.552 8.318 28.002 29.322 Atomic orbital electron populations 1.22061 0.93437 1.01290 1.02804 1.19068 0.96335 0.97437 0.86632 0.90263 1.22017 1.41039 1.09576 0.92272 0.95914 1.27444 0.93673 1.09114 0.91003 1.70998 1.43407 1.09548 1.32420 0.83686 0.79750 0.69485 0.77138 1.21262 1.14996 1.18280 1.24618 0.76083 0.82614 0.84397 1.90528 1.37334 1.27872 1.87203 1.86603 1.70047 1.55540 1.14609 1.21630 1.00071 0.95465 0.80836 1.19789 0.96528 1.00534 0.97331 1.17084 0.83208 0.94594 0.93347 1.91586 1.44668 1.89796 1.84232 1.21651 0.96066 1.00042 0.92613 1.18609 0.95505 0.97698 0.94474 1.20183 0.80680 0.77094 0.83087 1.90949 1.24645 1.62863 1.63600 1.84486 1.52312 1.49100 1.45061 1.21309 1.01809 0.94998 0.93034 1.16939 0.88891 0.89304 0.93040 1.91579 1.75104 1.59797 1.84027 0.90549 0.91219 0.94318 0.94028 0.89823 0.89431 0.79171 0.69483 0.80935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 8.80 71.99 0.63 -4.99 16 2 C 0.02 1.17 2.32 -12.29 -0.03 1.15 16 3 H 0.08 3.42 6.80 -2.39 -0.02 3.40 16 4 C -0.61 -35.92 8.63 25.60 0.22 -35.70 16 5 H 0.02 1.54 7.02 -2.91 -0.02 1.52 16 6 C -0.01 -0.82 5.29 84.65 0.45 -0.37 16 7 N -0.93 -58.65 13.70 21.45 0.29 -58.36 16 8 Si 1.08 46.79 26.29 68.60 1.80 48.59 16 9 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 10 H -0.23 -8.20 5.76 99.48 0.57 -7.63 16 11 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 12 C 0.48 22.05 7.25 71.24 0.52 22.56 16 13 O -0.54 -28.66 15.22 21.97 0.33 -28.32 16 14 O -0.35 -13.11 10.13 -51.43 -0.52 -13.63 16 15 C 0.09 2.89 5.23 71.24 0.37 3.26 16 16 C -0.14 -3.28 5.54 -19.72 -0.11 -3.39 16 17 C 0.14 2.67 7.23 22.33 0.16 2.83 16 18 F -0.12 -2.79 16.45 44.97 0.74 -2.05 16 19 C -0.09 -1.10 9.59 22.59 0.22 -0.88 16 20 C -0.06 -0.83 5.87 -20.11 -0.12 -0.95 16 21 C 0.55 6.64 8.27 70.33 0.58 7.22 16 22 O -0.53 -9.63 17.13 19.93 0.34 -9.29 16 23 O -0.49 -2.64 12.68 -56.15 -0.71 -3.35 16 24 C -0.09 -1.49 9.57 22.58 0.22 -1.27 16 25 C 0.14 2.92 7.23 22.33 0.16 3.08 16 26 F -0.13 -3.14 16.46 44.97 0.74 -2.40 16 27 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.07 2.81 4.88 -2.39 -0.01 2.79 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.25 16.35 8.73 -92.71 -0.81 15.54 16 31 H 0.08 2.62 7.62 -2.39 -0.02 2.60 16 32 H 0.09 2.68 7.61 -2.39 -0.02 2.67 16 33 H 0.19 1.40 7.61 -2.91 -0.02 1.37 16 34 H 0.44 -1.54 9.11 -74.06 -0.67 -2.21 16 35 H 0.17 2.40 7.65 -2.90 -0.02 2.38 16 Total: -1.00 -77.82 322.14 6.63 -71.19 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 0.34 Total: 5.09 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 3.27 Total: -7.47 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.29 Total: -58.36 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -0.56 Total: -54.59 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 1.48 Total: -4.45 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.80 Total: 48.59 kcal Total: -77.82 6.63 -71.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061290.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.526 kcal (2) G-P(sol) polarization free energy of solvation -77.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -264.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds