Wall clock time and date at job start Tue Mar 31 2020 10:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46950 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47438 * 299.99857 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00305 * 3 2 1 7 7 C 1.37882 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47289 * 60.00053 * 9 7 2 12 12 C 1.34227 * 117.00010 * 89.99830 * 11 9 7 13 13 O 1.20830 * 119.99699 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00298 * 180.02562 * 12 11 9 15 15 H 1.09008 * 110.82843 * 56.28923 * 14 12 11 16 16 C 1.54706 * 110.94153 * 292.54002 * 14 12 11 17 17 O 1.43775 * 102.78544 * 267.12458 * 16 14 12 18 18 C 1.36131 * 109.24197 * 332.25852 * 17 16 14 19 19 C 1.39282 * 129.88872 * 198.42814 * 18 17 16 20 20 C 1.37940 * 120.23799 * 181.00049 * 19 18 17 21 21 C 1.38285 * 120.35279 * 359.95267 * 20 19 18 22 22 C 1.38349 * 119.76562 * 359.85330 * 21 20 19 23 23 C 1.37744 * 119.97912 * 0.02562 * 22 21 20 24 24 C 1.50703 * 109.47227 * 300.00125 * 9 7 2 25 25 C 1.34511 * 125.78969 * 264.71963 * 24 9 7 26 26 C 1.41386 * 106.84165 * 179.88756 * 25 24 9 27 27 C 1.34516 * 106.83662 * 0.37085 * 26 25 24 28 28 O 1.34298 * 108.42340 * 359.77201 * 27 26 25 29 29 H 0.97002 * 120.00075 * 0.02562 * 1 2 3 30 30 H 1.09005 * 110.74883 * 25.45018 * 16 14 12 31 31 H 1.09002 * 110.74851 * 148.80107 * 16 14 12 32 32 H 1.07996 * 119.88286 * 0.94876 * 19 18 17 33 33 H 1.07998 * 119.81854 * 179.97438 * 20 19 18 34 34 H 1.08001 * 120.11510 * 179.83331 * 21 20 19 35 35 H 1.07998 * 120.01354 * 179.97438 * 22 21 20 36 36 H 1.07996 * 126.57862 * 0.02562 * 25 24 9 37 37 H 1.07997 * 126.57757 * 180.15839 * 26 25 24 38 38 H 1.08000 * 125.78541 * 179.78743 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4158 -2.5759 -1.1858 12 6 0.9621 -3.1258 -2.2816 13 8 2.1003 -3.5301 -2.2513 14 6 0.1558 -3.2389 -3.5497 15 1 -0.2146 -2.2624 -3.8620 16 6 -1.0082 -4.2433 -3.3771 17 8 -0.4360 -5.4768 -3.8441 18 6 0.5349 -5.2032 -4.7583 19 6 1.1174 -6.0290 -5.7169 20 6 2.1134 -5.5440 -6.5387 21 6 2.5419 -4.2347 -6.4196 22 6 1.9657 -3.4068 -5.4727 23 6 0.9691 -3.8883 -4.6526 24 6 0.3851 -2.5793 1.2302 25 6 0.7153 -3.1820 2.3865 26 6 -0.3812 -3.0148 3.2633 27 6 -1.3191 -2.3270 2.5875 28 8 -0.8495 -2.0659 1.3567 29 1 -0.4850 0.8401 -0.0004 30 1 -1.2966 -4.3237 -2.3290 31 1 -1.8608 -3.9557 -3.9924 32 1 0.7886 -7.0528 -5.8165 33 1 2.5607 -6.1903 -7.2794 34 1 3.3240 -3.8597 -7.0632 35 1 2.2975 -2.3837 -5.3759 36 1 1.6413 -3.6934 2.6042 37 1 -0.4533 -3.3738 4.2793 38 1 -2.2857 -2.0343 2.9700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649263942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:51 Heat of formation + Delta-G solvation = -61.254764 kcal Electronic energy + Delta-G solvation = -26024.075064 eV Core-core repulsion = 22185.570338 eV Total energy + Delta-G solvation = -3838.504726 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36656 -41.22886 -38.91806 -37.28114 -35.50115 -33.06654 -32.61251 -31.86660 -30.07938 -29.87245 -29.14672 -26.57609 -24.37902 -23.23825 -22.37214 -21.89388 -20.70221 -19.81608 -19.46362 -17.56040 -17.03104 -16.75083 -16.50311 -16.24683 -15.83893 -15.40444 -15.01945 -14.74092 -14.49390 -14.35597 -13.88902 -13.39921 -13.23645 -12.92610 -12.71470 -12.42604 -11.98992 -11.81603 -11.70876 -11.61810 -11.55660 -11.36691 -11.09302 -11.02220 -10.99095 -10.69754 -10.38748 -9.88971 -9.57852 -9.12747 -8.88891 -8.83243 -8.77994 -8.06340 -7.37721 -6.28128 -4.49821 1.34983 1.49293 2.87132 3.05145 3.14912 3.23503 3.28830 3.40204 3.47342 3.66515 4.03012 4.20773 4.22565 4.43471 4.67553 4.94171 5.03209 5.09669 5.22870 5.34138 5.44651 5.61712 5.63953 5.70264 5.80916 5.87068 5.94657 6.08620 6.32876 6.38426 6.43090 6.50576 6.57693 6.67404 6.77696 6.86556 7.16782 7.26302 7.44625 7.57202 7.69745 7.76156 8.37121 8.53413 8.89663 9.24020 10.70948 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.004679 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.949623 B = 5982.372294 C = 7164.799293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.080 3.920 3 Si 0.897 3.103 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.279 3.721 10 H 0.071 0.929 11 O -0.333 6.333 12 C 0.469 3.531 13 O -0.513 6.513 14 C -0.078 4.078 15 H 0.128 0.872 16 C 0.066 3.934 17 O -0.303 6.303 18 C 0.113 3.887 19 C -0.144 4.144 20 C -0.085 4.085 21 C -0.152 4.152 22 C -0.050 4.050 23 C -0.147 4.147 24 C 0.081 3.919 25 C -0.263 4.263 26 C -0.220 4.220 27 C -0.081 4.081 28 O -0.117 6.117 29 H 0.267 0.733 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 -6.480 -8.244 10.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.130 4.130 3 Si 0.723 3.277 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.583 4.583 8 H 0.093 0.907 9 C 0.227 3.773 10 H 0.089 0.911 11 O -0.248 6.248 12 C 0.310 3.690 13 O -0.403 6.403 14 C -0.097 4.097 15 H 0.146 0.854 16 C -0.009 4.009 17 O -0.217 6.217 18 C 0.068 3.932 19 C -0.163 4.163 20 C -0.103 4.103 21 C -0.171 4.171 22 C -0.068 4.068 23 C -0.148 4.148 24 C 0.027 3.973 25 C -0.283 4.283 26 C -0.240 4.240 27 C -0.150 4.150 28 O -0.009 6.009 29 H 0.077 0.923 30 H 0.137 0.863 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.839 -6.525 -8.299 10.932 hybrid contribution 0.599 1.252 0.602 1.513 sum -2.240 -5.272 -7.698 9.595 Atomic orbital electron populations 1.70053 1.05740 1.27266 1.42869 1.25165 0.95012 0.99800 0.93051 0.86447 0.80538 0.82752 0.77946 1.19238 1.20479 1.20494 1.21300 0.93521 0.89229 1.54248 0.90694 1.18815 0.84739 0.98302 0.75403 0.91131 1.86711 1.47626 1.70207 1.20285 1.22553 0.86075 0.74681 0.85643 1.90573 1.19023 1.46236 1.84492 1.21181 0.95013 1.02614 0.90900 0.85386 1.23824 0.94307 0.80188 1.02576 1.86836 1.49526 1.31564 1.53774 1.19584 0.90175 0.93503 0.89924 1.20176 1.00184 0.99952 0.95963 1.20827 0.95622 0.95666 0.98197 1.20982 1.01612 0.94081 1.00388 1.20339 0.93090 1.00188 0.93204 1.20269 1.00955 0.95138 0.98464 1.22776 0.83747 0.93128 0.97624 1.21175 1.01498 1.10907 0.94700 1.21499 0.95370 1.06566 1.00546 1.23787 1.00448 1.04908 0.85901 1.84402 1.27672 1.59177 1.29676 0.92285 0.86338 0.89135 0.85592 0.85356 0.85558 0.85679 0.84930 0.85126 0.79984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.21 10.64 55.43 0.59 -21.62 16 2 C 0.08 2.13 5.24 -17.82 -0.09 2.04 16 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.55 -14.88 8.91 -34.44 -0.31 -15.19 16 8 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 9 C 0.28 7.17 2.57 -29.03 -0.07 7.10 16 10 H 0.07 1.81 7.16 -51.93 -0.37 1.44 16 11 O -0.33 -8.18 9.24 -42.05 -0.39 -8.57 16 12 C 0.47 10.44 7.16 36.00 0.26 10.70 16 13 O -0.51 -12.70 15.36 -18.75 -0.29 -12.98 16 14 C -0.08 -1.35 3.63 -91.56 -0.33 -1.68 16 15 H 0.13 1.99 8.14 -51.92 -0.42 1.57 16 16 C 0.07 0.98 7.54 38.06 0.29 1.27 16 17 O -0.30 -5.01 11.10 -20.16 -0.22 -5.24 16 18 C 0.11 1.83 7.04 -38.95 -0.27 1.56 16 19 C -0.14 -1.94 10.06 -39.30 -0.40 -2.33 16 20 C -0.09 -1.00 10.02 -39.67 -0.40 -1.40 16 21 C -0.15 -1.91 10.07 -39.52 -0.40 -2.31 16 22 C -0.05 -0.75 10.03 -39.72 -0.40 -1.15 16 23 C -0.15 -2.46 4.93 -104.10 -0.51 -2.97 16 24 C 0.08 1.99 5.58 -35.62 -0.20 1.79 16 25 C -0.26 -5.82 10.81 -39.70 -0.43 -6.25 16 26 C -0.22 -4.32 10.91 -39.70 -0.43 -4.76 16 27 C -0.08 -1.63 12.09 29.42 0.36 -1.27 16 28 O -0.12 -2.85 8.89 2.03 0.02 -2.84 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.12 1.79 7.90 -51.93 -0.41 1.38 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.13 2.68 8.06 -52.49 -0.42 2.25 16 37 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 38 H 0.18 2.84 8.06 -52.49 -0.42 2.42 16 LS Contribution 336.54 15.07 5.07 5.07 Total: -1.00 -32.07 336.54 -7.72 -39.79 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.13 Total: 5.76 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -3.34 Total: -14.85 kcal Atomic # 7 Polarization: -22.21 SS G_CDS: 0.59 Total: -21.62 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.88 Total: -29.63 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.07 -7.72 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649263942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.469 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds