Wall clock time and date at job start Tue Mar 31 2020 10:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46950 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47438 * 299.99857 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00305 * 3 2 1 7 7 C 1.37882 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47289 * 60.00053 * 9 7 2 12 12 C 1.34227 * 117.00010 * 89.99830 * 11 9 7 13 13 O 1.20830 * 119.99699 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00298 * 180.02562 * 12 11 9 15 15 H 1.09008 * 110.82843 * 56.28923 * 14 12 11 16 16 C 1.54706 * 110.94153 * 292.54002 * 14 12 11 17 17 O 1.43775 * 102.78544 * 267.12458 * 16 14 12 18 18 C 1.36131 * 109.24197 * 332.25852 * 17 16 14 19 19 C 1.39282 * 129.88872 * 198.42814 * 18 17 16 20 20 C 1.37940 * 120.23799 * 181.00049 * 19 18 17 21 21 C 1.38285 * 120.35279 * 359.95267 * 20 19 18 22 22 C 1.38349 * 119.76562 * 359.85330 * 21 20 19 23 23 C 1.37744 * 119.97912 * 0.02562 * 22 21 20 24 24 C 1.50703 * 109.47227 * 300.00125 * 9 7 2 25 25 C 1.34511 * 125.78969 * 264.71963 * 24 9 7 26 26 C 1.41386 * 106.84165 * 179.88756 * 25 24 9 27 27 C 1.34516 * 106.83662 * 0.37085 * 26 25 24 28 28 O 1.34298 * 108.42340 * 359.77201 * 27 26 25 29 29 H 0.97002 * 120.00075 * 0.02562 * 1 2 3 30 30 H 1.09005 * 110.74883 * 25.45018 * 16 14 12 31 31 H 1.09002 * 110.74851 * 148.80107 * 16 14 12 32 32 H 1.07996 * 119.88286 * 0.94876 * 19 18 17 33 33 H 1.07998 * 119.81854 * 179.97438 * 20 19 18 34 34 H 1.08001 * 120.11510 * 179.83331 * 21 20 19 35 35 H 1.07998 * 120.01354 * 179.97438 * 22 21 20 36 36 H 1.07996 * 126.57862 * 0.02562 * 25 24 9 37 37 H 1.07997 * 126.57757 * 180.15839 * 26 25 24 38 38 H 1.08000 * 125.78541 * 179.78743 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4158 -2.5759 -1.1858 12 6 0.9621 -3.1258 -2.2816 13 8 2.1003 -3.5301 -2.2513 14 6 0.1558 -3.2389 -3.5497 15 1 -0.2146 -2.2624 -3.8620 16 6 -1.0082 -4.2433 -3.3771 17 8 -0.4360 -5.4768 -3.8441 18 6 0.5349 -5.2032 -4.7583 19 6 1.1174 -6.0290 -5.7169 20 6 2.1134 -5.5440 -6.5387 21 6 2.5419 -4.2347 -6.4196 22 6 1.9657 -3.4068 -5.4727 23 6 0.9691 -3.8883 -4.6526 24 6 0.3851 -2.5793 1.2302 25 6 0.7153 -3.1820 2.3865 26 6 -0.3812 -3.0148 3.2633 27 6 -1.3191 -2.3270 2.5875 28 8 -0.8495 -2.0659 1.3567 29 1 -0.4850 0.8401 -0.0004 30 1 -1.2966 -4.3237 -2.3290 31 1 -1.8608 -3.9557 -3.9924 32 1 0.7886 -7.0528 -5.8165 33 1 2.5607 -6.1903 -7.2794 34 1 3.3240 -3.8597 -7.0632 35 1 2.2975 -2.3837 -5.3759 36 1 1.6413 -3.6934 2.6042 37 1 -0.4533 -3.3738 4.2793 38 1 -2.2857 -2.0343 2.9700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649263942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:50 Heat of formation + Delta-G solvation = -79.003506 kcal Electronic energy + Delta-G solvation = -26024.844707 eV Core-core repulsion = 22185.570338 eV Total energy + Delta-G solvation = -3839.274369 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.06953 -42.50296 -40.64729 -38.36682 -37.37112 -35.00369 -33.95672 -33.57989 -31.74100 -31.05145 -30.33396 -28.42584 -25.94197 -24.80242 -23.65705 -23.05408 -22.34703 -21.39086 -21.20712 -19.20564 -18.61014 -18.37543 -17.90069 -17.55825 -17.44109 -16.97224 -16.45071 -16.28884 -16.22796 -16.09091 -15.08470 -14.90238 -14.53544 -14.43607 -14.11970 -13.60443 -13.58772 -13.52030 -13.39116 -13.14650 -13.07780 -12.89174 -12.75441 -12.64686 -12.25707 -12.18726 -11.91246 -11.78117 -11.34513 -11.03494 -10.83596 -10.51597 -9.91115 -9.19283 -9.10024 -8.26351 -6.57132 0.24553 0.41110 1.15824 1.32613 1.36007 1.36942 1.47483 1.86930 2.08856 2.23279 2.30638 2.55918 2.80755 3.05004 3.16252 3.44121 3.79284 3.88076 4.16732 4.20822 4.26394 4.34915 4.37845 4.43453 4.45481 4.50579 4.57302 4.63902 4.67166 5.03111 5.11487 5.21362 5.35146 5.40845 5.43751 5.53059 5.53232 5.62960 5.75066 5.84090 5.91348 6.16394 6.46927 6.67926 7.03939 7.21071 8.71721 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.004679 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.949623 B = 5982.372294 C = 7164.799293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.044 3.956 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.577 4.577 8 H 0.058 0.942 9 C 0.279 3.721 10 H 0.052 0.948 11 O -0.343 6.343 12 C 0.461 3.539 13 O -0.546 6.546 14 C -0.075 4.075 15 H 0.141 0.859 16 C 0.071 3.929 17 O -0.319 6.319 18 C 0.088 3.912 19 C -0.147 4.147 20 C -0.074 4.074 21 C -0.148 4.148 22 C -0.071 4.071 23 C -0.175 4.175 24 C 0.041 3.959 25 C -0.266 4.266 26 C -0.219 4.219 27 C -0.079 4.079 28 O -0.144 6.144 29 H 0.270 0.730 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.148 0.852 33 H 0.171 0.829 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.143 0.857 37 H 0.170 0.830 38 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.289 -6.732 -9.026 11.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.165 4.165 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.613 4.613 8 H 0.076 0.924 9 C 0.227 3.773 10 H 0.070 0.930 11 O -0.258 6.258 12 C 0.305 3.695 13 O -0.438 6.438 14 C -0.094 4.094 15 H 0.159 0.841 16 C -0.004 4.004 17 O -0.233 6.233 18 C 0.043 3.957 19 C -0.166 4.166 20 C -0.092 4.092 21 C -0.166 4.166 22 C -0.089 4.089 23 C -0.176 4.176 24 C -0.011 4.011 25 C -0.285 4.285 26 C -0.238 4.238 27 C -0.147 4.147 28 O -0.037 6.037 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.147 0.853 32 H 0.166 0.834 33 H 0.188 0.812 34 H 0.175 0.825 35 H 0.141 0.859 36 H 0.160 0.840 37 H 0.188 0.812 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.399 -6.784 -9.086 11.838 hybrid contribution 0.788 1.219 0.828 1.671 sum -2.612 -5.565 -8.258 10.295 Atomic orbital electron populations 1.70146 1.06553 1.27992 1.42920 1.25777 0.95864 1.02306 0.92510 0.85549 0.79011 0.79060 0.78410 1.19649 1.19488 1.19655 1.21390 0.92992 0.90789 1.56118 0.92380 1.18611 0.85267 0.96996 0.76427 0.92995 1.86687 1.47522 1.70765 1.20823 1.23609 0.86222 0.73293 0.86393 1.90529 1.20666 1.47554 1.85056 1.21269 0.95520 1.04211 0.88438 0.84115 1.23933 0.94328 0.79139 1.02992 1.86786 1.50015 1.32133 1.54382 1.19947 0.90830 0.93921 0.90965 1.20632 1.00044 1.00737 0.95179 1.21346 0.94237 0.95739 0.97876 1.21404 1.01485 0.94170 0.99526 1.20597 0.93334 1.00849 0.94149 1.20365 1.02381 0.95752 0.99065 1.22642 0.84719 0.95789 0.97972 1.21554 1.02607 1.09854 0.94507 1.21899 0.93912 1.06087 1.01878 1.24736 1.01985 1.03673 0.84321 1.84339 1.27610 1.59858 1.31895 0.92031 0.87231 0.85309 0.83400 0.81172 0.82471 0.85903 0.83963 0.81240 0.75679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.06 10.64 21.45 0.23 -45.84 16 2 C 0.04 2.40 5.24 84.66 0.44 2.84 16 3 Si 0.96 42.67 29.54 68.60 2.03 44.70 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.58 -32.87 8.91 25.60 0.23 -32.65 16 8 H 0.06 3.37 7.81 -2.91 -0.02 3.35 16 9 C 0.28 15.16 2.57 29.10 0.07 15.23 16 10 H 0.05 2.89 7.16 -2.39 -0.02 2.87 16 11 O -0.34 -17.75 9.24 -48.72 -0.45 -18.20 16 12 C 0.46 21.67 7.16 71.23 0.51 22.18 16 13 O -0.55 -28.69 15.36 21.95 0.34 -28.35 16 14 C -0.08 -2.69 3.63 -11.40 -0.04 -2.74 16 15 H 0.14 4.52 8.14 -2.38 -0.02 4.50 16 16 C 0.07 2.13 7.54 72.56 0.55 2.67 16 17 O -0.32 -10.62 11.10 -95.04 -1.06 -11.68 16 18 C 0.09 2.82 7.04 22.68 0.16 2.98 16 19 C -0.15 -3.68 10.06 22.45 0.23 -3.46 16 20 C -0.07 -1.51 10.02 22.21 0.22 -1.29 16 21 C -0.15 -3.37 10.07 22.31 0.22 -3.15 16 22 C -0.07 -2.13 10.03 22.18 0.22 -1.90 16 23 C -0.17 -5.90 4.93 -19.53 -0.10 -6.00 16 24 C 0.04 2.10 5.58 24.83 0.14 2.24 16 25 C -0.27 -11.81 10.81 22.19 0.24 -11.57 16 26 C -0.22 -8.15 10.91 22.19 0.24 -7.91 16 27 C -0.08 -3.02 12.09 66.97 0.81 -2.21 16 28 O -0.14 -7.05 8.89 1.06 0.01 -7.04 16 29 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.11 3.44 7.90 -2.38 -0.02 3.42 16 31 H 0.13 2.84 8.14 -2.39 -0.02 2.83 16 32 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 34 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 35 H 0.12 3.57 8.06 -2.91 -0.02 3.54 16 36 H 0.14 5.83 8.06 -2.91 -0.02 5.80 16 37 H 0.17 4.87 8.06 -2.91 -0.02 4.84 16 38 H 0.23 6.27 8.06 -2.91 -0.02 6.24 16 Total: -1.00 -72.84 336.54 6.34 -66.51 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 1.09 Total: 24.59 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 4.15 Total: -24.71 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.23 Total: -45.84 kcal Atomic # 8 Polarization: -64.10 SS G_CDS: -1.16 Total: -65.26 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -72.84 6.34 -66.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649263942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.494 kcal (2) G-P(sol) polarization free energy of solvation -72.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds