Wall clock time and date at job start Tue Mar 31 2020 11:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31690 * 119.72060 * 2 1 4 4 C 1.31931 * 121.88352 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.45069 * 180.02562 * 4 3 2 6 6 F 1.39903 * 109.47060 * 270.02241 * 5 4 3 7 7 F 1.39902 * 109.46810 * 30.02146 * 5 4 3 8 8 F 1.39895 * 109.47124 * 150.01972 * 5 4 3 9 9 C 1.38367 * 121.09772 * 0.04534 * 4 3 2 10 10 C 1.38338 * 119.31220 * 359.97438 * 9 4 3 11 11 C 1.39590 * 119.72420 * 180.02562 * 2 1 3 12 12 C 1.47727 * 120.56492 * 0.27198 * 11 2 1 13 13 O 1.21595 * 119.99355 * 314.43018 * 12 11 2 14 14 N 1.34775 * 120.00101 * 134.43079 * 12 11 2 15 15 C 1.36877 * 119.99649 * 184.04692 * 14 12 11 16 16 H 1.07992 * 119.99631 * 134.11838 * 15 14 12 17 17 C 1.39044 * 119.99837 * 314.11118 * 15 14 12 18 18 N 1.31354 * 120.00403 * 338.85738 * 17 15 14 19 19 Si 1.86808 * 119.99444 * 158.85386 * 17 15 14 20 20 H 1.48508 * 109.46803 * 90.00194 * 19 17 15 21 21 H 1.48500 * 109.47158 * 210.00078 * 19 17 15 22 22 H 1.48493 * 109.47285 * 330.00152 * 19 17 15 23 23 C 1.46494 * 119.99841 * 4.04487 * 14 12 11 24 24 C 1.53001 * 117.49806 * 182.93510 * 23 14 12 25 25 C 1.53000 * 60.00269 * 252.51059 * 24 23 14 26 26 H 1.09004 * 109.47146 * 270.11849 * 1 2 3 27 27 H 1.08994 * 109.47568 * 30.11707 * 1 2 3 28 28 H 1.09000 * 109.47097 * 150.12180 * 1 2 3 29 29 H 1.07998 * 120.34414 * 179.97438 * 9 4 3 30 30 H 1.07991 * 120.86193 * 179.97438 * 10 9 4 31 31 H 0.97006 * 119.99995 * 185.04699 * 18 17 15 32 32 H 1.09000 * 115.55548 * 328.64104 * 23 14 12 33 33 H 1.08999 * 117.49728 * 359.97438 * 24 23 14 34 34 H 1.09005 * 117.50019 * 145.02269 * 24 23 14 35 35 H 1.08997 * 117.50056 * 252.51183 * 25 24 23 36 36 H 1.08995 * 117.52006 * 107.47678 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1935 0.0005 5 6 4.1691 2.5328 0.0011 6 9 4.3830 2.9477 -1.3178 7 9 3.3677 3.4706 0.6609 8 9 5.3980 2.4233 0.6606 9 6 4.2371 0.0365 0.0001 10 6 3.5999 -1.1914 -0.0003 11 6 2.1991 -1.2122 -0.0005 12 6 1.4669 -2.4953 -0.0072 13 8 0.5223 -2.6600 0.7405 14 7 1.8460 -3.4832 -0.8418 15 6 1.1181 -4.6405 -0.9076 16 1 0.8637 -5.0645 -1.8677 17 6 0.7064 -5.2703 0.2617 18 7 1.3293 -5.0280 1.3925 19 14 -0.7326 -6.4609 0.2243 20 1 -0.2327 -7.8332 -0.0445 21 1 -1.4298 -6.4359 1.5352 22 1 -1.6790 -6.0600 -0.8474 23 6 3.0371 -3.3184 -1.6787 24 6 3.3763 -4.4466 -2.6548 25 6 4.2282 -4.2378 -1.4012 26 1 -0.3633 0.0021 1.0277 27 1 -0.3634 0.8889 -0.5156 28 1 -0.3633 -0.8911 -0.5119 29 1 5.3157 0.0914 0.0001 30 1 4.1675 -2.1101 -0.0010 31 1 1.0905 -5.5211 2.1930 32 1 3.2522 -2.2975 -1.9945 33 1 2.7135 -5.3117 -2.6741 34 1 3.8145 -4.1682 -3.6133 35 1 5.2268 -3.8219 -1.5349 36 1 4.1257 -4.9650 -0.5958 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:50 Heat of formation + Delta-G solvation = -122.213903 kcal Electronic energy + Delta-G solvation = -26675.739538 eV Core-core repulsion = 22325.027436 eV Total energy + Delta-G solvation = -4350.712101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.23487 -48.75403 -48.69581 -41.90830 -40.05836 -37.87208 -34.98740 -34.36999 -34.01376 -32.76382 -29.44949 -28.37916 -26.64078 -24.35786 -23.69100 -23.14156 -22.72699 -21.47732 -19.64611 -19.60665 -19.38905 -18.94054 -17.97887 -17.49431 -17.03199 -16.32525 -15.88379 -15.66011 -15.57021 -15.46163 -15.37607 -15.26977 -15.13108 -14.86023 -14.84809 -14.62227 -14.45074 -14.07961 -13.84647 -13.56543 -13.26222 -13.16413 -12.88128 -12.77773 -12.68621 -12.23638 -12.06682 -11.63053 -11.38158 -11.06158 -10.96190 -10.71924 -10.32797 -10.12637 -9.04611 -8.29137 -6.04503 -0.63062 -0.04008 1.33269 1.37059 1.45419 1.52246 1.93886 2.27825 2.38929 2.48476 2.78071 2.89008 3.06024 3.28394 3.31142 3.41033 3.62703 3.69468 3.86053 4.04476 4.10140 4.23375 4.33828 4.37617 4.57828 4.65708 4.74426 4.90828 4.96483 4.99719 5.05306 5.27440 5.35076 5.44657 5.52525 6.15353 6.44454 6.92393 7.06146 7.54549 8.17621 8.78764 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.021425 B = 0.004292 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.580231 B = 6521.518438 C = 7232.486318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.156 3.844 3 N -0.460 5.460 4 C 0.027 3.973 5 C 0.535 3.465 6 F -0.169 7.169 7 F -0.172 7.172 8 F -0.162 7.162 9 C -0.117 4.117 10 C -0.047 4.047 11 C -0.133 4.133 12 C 0.505 3.495 13 O -0.569 6.569 14 N -0.420 5.420 15 C -0.360 4.360 16 H 0.087 0.913 17 C 0.034 3.966 18 N -0.860 5.860 19 Si 0.967 3.033 20 H -0.264 1.264 21 H -0.294 1.294 22 H -0.266 1.266 23 C 0.036 3.964 24 C -0.163 4.163 25 C -0.182 4.182 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.189 0.811 30 H 0.163 0.837 31 H 0.263 0.737 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.228 9.618 -5.952 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.017 3.983 3 N -0.169 5.169 4 C -0.113 4.113 5 C 0.480 3.520 6 F -0.150 7.150 7 F -0.153 7.153 8 F -0.143 7.143 9 C -0.136 4.136 10 C -0.073 4.073 11 C -0.139 4.139 12 C 0.293 3.707 13 O -0.450 6.450 14 N -0.138 5.138 15 C -0.487 4.487 16 H 0.104 0.896 17 C -0.175 4.175 18 N -0.494 5.494 19 Si 0.792 3.208 20 H -0.189 1.189 21 H -0.220 1.220 22 H -0.191 1.191 23 C -0.069 4.069 24 C -0.200 4.200 25 C -0.220 4.220 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.206 0.794 30 H 0.180 0.820 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.103 0.897 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.251 10.329 -5.383 14.274 hybrid contribution -0.288 -1.399 0.542 1.527 sum 7.962 8.930 -4.842 12.907 Atomic orbital electron populations 1.20649 0.87108 1.03402 1.03618 1.21347 0.97762 0.85815 0.93372 1.66968 1.08534 1.29536 1.11863 1.21262 0.91447 0.93557 1.05007 1.17603 0.76503 0.83768 0.74151 1.93236 1.94856 1.91231 1.35711 1.93215 1.73634 1.67494 1.80987 1.93221 1.44061 1.96091 1.80938 1.22028 1.03356 0.90149 0.98110 1.22145 0.92432 0.99724 0.92978 1.21439 0.95909 0.95538 1.01040 1.18029 0.85067 0.82926 0.84674 1.90620 1.31542 1.81495 1.41363 1.42840 1.21887 1.12717 1.36359 1.19163 1.33688 1.02650 0.93149 0.89557 1.26044 0.98656 0.97883 0.94899 1.69897 1.39102 1.39261 1.01119 0.85361 0.79603 0.78554 0.77307 1.18898 1.22040 1.19063 1.22178 0.88628 0.96266 0.99806 1.23182 1.02564 0.99850 0.94443 1.23272 0.95833 1.03309 0.99630 0.90275 0.88703 0.91514 0.79408 0.81988 0.92779 0.85663 0.89665 0.85803 0.85571 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.19 9.16 71.23 0.65 -2.53 16 2 C 0.16 5.75 6.82 42.91 0.29 6.04 16 3 N -0.46 -15.36 9.85 -170.99 -1.68 -17.05 16 4 C 0.03 0.76 6.30 42.58 0.27 1.03 16 5 C 0.54 13.11 3.43 71.24 0.24 13.36 16 6 F -0.17 -4.01 17.30 44.97 0.78 -3.24 16 7 F -0.17 -4.66 17.03 44.97 0.77 -3.89 16 8 F -0.16 -3.45 16.43 44.97 0.74 -2.71 16 9 C -0.12 -2.89 9.42 22.32 0.21 -2.68 16 10 C -0.05 -1.44 7.75 22.74 0.18 -1.26 16 11 C -0.13 -5.21 5.13 -19.99 -0.10 -5.32 16 12 C 0.50 24.55 5.87 86.75 0.51 25.06 16 13 O -0.57 -32.39 13.24 -4.02 -0.05 -32.45 16 14 N -0.42 -19.63 2.81 -616.50 -1.73 -21.36 16 15 C -0.36 -18.48 7.99 84.10 0.67 -17.80 16 16 H 0.09 4.27 7.10 -2.91 -0.02 4.25 16 17 C 0.03 1.80 4.28 84.96 0.36 2.16 16 18 N -0.86 -49.30 11.99 21.68 0.26 -49.04 16 19 Si 0.97 43.31 29.61 68.60 2.03 45.34 16 20 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 C 0.04 1.26 4.46 45.00 0.20 1.46 16 24 C -0.16 -4.98 9.81 30.59 0.30 -4.68 16 25 C -0.18 -5.65 9.50 30.60 0.29 -5.36 16 26 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 27 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.07 2.63 6.61 -2.39 -0.02 2.61 16 29 H 0.19 3.06 7.59 -2.91 -0.02 3.03 16 30 H 0.16 4.75 5.99 -2.92 -0.02 4.74 16 31 H 0.26 14.60 8.32 -92.70 -0.77 13.83 16 32 H 0.13 3.84 6.29 -2.39 -0.02 3.82 16 33 H 0.08 3.01 6.62 -2.39 -0.02 3.00 16 34 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 35 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -66.33 318.68 6.33 -60.00 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.15 Total: 14.92 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 4.08 Total: 9.48 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -3.16 Total: -87.46 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.05 Total: -32.45 kcal Atomic # 9 Polarization: -12.12 SS G_CDS: 2.28 Total: -9.83 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -66.33 6.33 -60.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.212 kcal (2) G-P(sol) polarization free energy of solvation -66.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds