Wall clock time and date at job start Tue Mar 31 2020 10:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47653 * 270.00393 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48498 * 109.47160 * 150.00205 * 3 2 1 7 7 C 1.38797 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00443 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99828 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00365 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47641 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47326 * 179.97438 * 12 11 10 14 14 C 1.76198 * 100.00092 * 179.97438 * 13 12 11 15 15 N 1.31542 * 126.45130 * 359.69140 * 14 13 12 16 16 N 1.28423 * 110.50029 * 179.81686 * 15 14 13 17 17 N 1.28905 * 110.33647 * 0.45729 * 16 15 14 18 18 N 1.35392 * 126.45378 * 179.97438 * 14 13 12 19 19 C 1.46500 * 127.38392 * 359.96566 * 18 14 13 20 20 C 1.54274 * 110.03300 * 237.90981 * 19 18 14 21 21 C 1.54964 * 104.15927 * 217.13604 * 20 19 18 22 22 C 1.54893 * 102.77933 * 37.88631 * 21 20 19 23 23 C 1.53881 * 110.03417 * 120.69130 * 19 18 14 24 24 H 0.97001 * 119.99667 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47163 * 59.99693 * 10 9 7 26 26 H 1.09001 * 109.46663 * 299.99981 * 10 9 7 27 27 H 1.09002 * 109.47103 * 59.99643 * 11 10 9 28 28 H 1.08998 * 109.46862 * 300.00456 * 11 10 9 29 29 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 30 30 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 31 31 H 1.09003 * 110.01786 * 359.30045 * 19 18 14 32 32 H 1.08998 * 110.48564 * 335.78008 * 20 19 18 33 33 H 1.08992 * 110.48678 * 98.42753 * 20 19 18 34 34 H 1.09001 * 110.72503 * 279.57471 * 21 20 19 35 35 H 1.08999 * 110.92203 * 156.29112 * 21 20 19 36 36 H 1.08995 * 110.49027 * 203.40578 * 22 21 20 37 37 H 1.09004 * 110.59700 * 80.81659 * 22 21 20 38 38 H 1.08996 * 110.03172 * 238.57015 * 23 19 18 39 39 H 1.08996 * 110.02896 * 359.94969 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5958 -3.2363 -0.0008 12 6 5.8615 -4.7430 0.0001 13 16 7.6468 -5.0409 -0.0006 14 6 7.6631 -6.8028 0.0014 15 7 6.6123 -7.5941 0.0085 16 7 6.9766 -8.8255 0.0039 17 7 8.2627 -8.9123 0.0034 18 7 8.7595 -7.5972 0.0012 19 6 10.1628 -7.1764 -0.0014 20 6 10.8885 -7.7641 -1.2294 21 6 12.3040 -8.1113 -0.7029 22 6 12.0189 -8.6355 0.7265 23 6 10.8813 -7.7298 1.2418 24 1 -0.4850 0.8401 0.0004 25 1 3.6434 -3.4318 -0.8906 26 1 3.6441 -3.4313 0.8893 27 1 6.0387 -2.7891 0.8891 28 1 6.0387 -2.7893 -0.8908 29 1 5.4185 -5.1906 -0.8896 30 1 5.4186 -5.1895 0.8903 31 1 10.2260 -6.0883 -0.0157 32 1 10.3805 -8.6630 -1.5786 33 1 10.9484 -7.0242 -2.0274 34 1 12.9322 -7.2212 -0.6696 35 1 12.7670 -8.8865 -1.3133 36 1 12.9035 -8.5314 1.3546 37 1 11.6942 -9.6756 0.6958 38 1 11.2939 -6.9104 1.8302 39 1 10.1857 -8.3107 1.8473 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075075921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:10 Heat of formation + Delta-G solvation = 87.778687 kcal Electronic energy + Delta-G solvation = -20367.263264 eV Core-core repulsion = 17178.003438 eV Total energy + Delta-G solvation = -3189.259826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.11414 -38.90352 -34.70540 -34.25212 -32.47450 -32.41444 -29.43650 -28.89298 -27.39318 -25.68089 -24.46622 -23.59000 -21.73825 -21.34932 -20.79880 -18.43175 -17.54878 -17.21933 -16.73175 -16.27226 -15.46526 -15.37864 -15.07545 -14.97608 -14.28649 -14.02356 -13.77674 -13.06552 -12.93285 -12.92531 -12.75786 -12.67994 -12.39025 -11.97723 -11.81741 -11.73860 -11.48725 -11.33627 -11.28056 -11.23674 -11.20549 -11.08355 -10.80043 -10.77064 -10.58980 -10.27735 -9.85224 -9.04482 -8.64767 -8.29738 -7.01029 -6.31504 -4.05315 0.44480 0.62966 1.62682 1.76535 2.00671 2.94840 3.27018 3.41248 3.51629 3.62458 3.79922 4.11874 4.25904 4.27618 4.52959 4.58487 4.70192 4.72352 4.78417 4.83701 4.94081 4.98153 5.06959 5.07191 5.10324 5.23204 5.28317 5.30713 5.36750 5.49133 5.51795 5.54003 5.70285 5.72056 5.87568 5.98393 6.22733 6.46668 7.92096 8.19218 8.42003 9.13666 10.77863 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.032896 B = 0.002239 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.967811 B =12502.140802 C =13105.469458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.503 4.503 8 H 0.090 0.910 9 S -0.211 6.211 10 C -0.079 4.079 11 C -0.089 4.089 12 C -0.099 4.099 13 S 0.024 5.976 14 C 0.216 3.784 15 N -0.333 5.333 16 N -0.035 5.035 17 N -0.083 5.083 18 N -0.359 5.359 19 C 0.145 3.855 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.132 4.132 24 H 0.271 0.729 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.975 -14.022 0.056 30.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.162 1.162 7 C -0.651 4.651 8 H 0.108 0.892 9 S 0.017 5.983 10 C -0.229 4.229 11 C -0.130 4.130 12 C -0.250 4.250 13 S 0.251 5.749 14 C -0.168 4.168 15 N -0.189 5.189 16 N -0.030 5.030 17 N -0.070 5.070 18 N -0.158 5.158 19 C 0.043 3.957 20 C -0.171 4.171 21 C -0.159 4.159 22 C -0.160 4.160 23 C -0.170 4.170 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 27.797 -13.575 0.068 30.934 hybrid contribution -1.267 -0.412 -0.019 1.333 sum 26.529 -13.986 0.049 29.990 Atomic orbital electron populations 1.69938 1.05910 1.27757 1.48011 1.24801 0.94526 0.99027 0.93338 0.86672 0.81713 0.83249 0.79709 1.19347 1.20068 1.16172 1.22102 0.86823 0.97517 1.58643 0.89238 1.84143 1.12048 1.04524 1.97581 1.23017 0.95595 0.99823 1.04500 1.21166 0.96939 0.90687 1.04191 1.23909 0.90812 1.02003 1.08239 1.85779 1.13590 0.84684 1.90852 1.27865 0.86148 1.02190 1.00643 1.74989 1.23988 0.95881 1.24027 1.77894 1.03948 1.11673 1.09513 1.82396 1.05001 0.97504 1.22085 1.51856 1.07952 1.04132 1.51859 1.22531 0.74127 1.00640 0.98434 1.22795 0.96208 1.02217 0.95839 1.22490 0.95510 1.01630 0.96238 1.22356 0.97712 0.99673 0.96241 1.22529 0.98152 1.00576 0.95770 0.91916 0.90826 0.90791 0.90172 0.90181 0.87799 0.87780 0.86420 0.89722 0.89960 0.90649 0.90453 0.90716 0.90830 0.89615 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.36 13.97 55.49 0.78 -25.59 16 2 C 0.09 2.63 5.50 -17.43 -0.10 2.54 16 3 Si 0.86 21.04 27.74 -169.99 -4.71 16.33 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.24 -5.64 6.74 56.52 0.38 -5.26 16 7 C -0.50 -14.26 10.04 30.94 0.31 -13.95 16 8 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 9 S -0.21 -4.89 19.41 -107.50 -2.09 -6.98 16 10 C -0.08 -1.41 5.67 37.15 0.21 -1.20 16 11 C -0.09 -1.19 5.22 -26.74 -0.14 -1.33 16 12 C -0.10 -1.14 5.23 37.16 0.19 -0.95 16 13 S 0.02 0.24 21.47 -107.50 -2.31 -2.07 16 14 C 0.22 2.61 8.15 -89.18 -0.73 1.88 16 15 N -0.33 -4.88 11.57 30.50 0.35 -4.52 16 16 N -0.03 -0.52 13.38 60.35 0.81 0.28 16 17 N -0.08 -1.08 13.55 60.35 0.82 -0.27 16 18 N -0.36 -3.84 3.24 -53.71 -0.17 -4.02 16 19 C 0.15 1.01 3.80 -66.81 -0.25 0.76 16 20 C -0.13 -0.78 6.53 -25.03 -0.16 -0.94 16 21 C -0.12 -0.49 6.91 -24.70 -0.17 -0.66 16 22 C -0.12 -0.57 6.83 -25.07 -0.17 -0.74 16 23 C -0.13 -0.78 6.57 -25.61 -0.17 -0.95 16 24 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 26 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.10 1.22 8.14 -51.91 -0.42 0.80 16 30 H 0.10 1.23 8.14 -51.92 -0.42 0.80 16 31 H 0.12 0.66 7.36 -51.93 -0.38 0.28 16 32 H 0.08 0.65 7.78 -51.93 -0.40 0.24 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.62 7.88 -51.93 -0.41 0.21 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -32.04 352.79 -8.23 -40.27 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -5.85 Total: -3.22 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -1.17 Total: -15.54 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 2.58 Total: -34.11 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.33 kcal Atomic # 16 Polarization: -4.65 SS G_CDS: -4.39 Total: -9.04 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.04 -8.23 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.047 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds