Wall clock time and date at job start Tue Mar 31 2020 10:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86799 * 120.00023 * 2 1 4 4 H 1.48497 * 109.47653 * 270.00393 * 3 2 1 5 5 H 1.48500 * 109.46931 * 30.00641 * 3 2 1 6 6 H 1.48498 * 109.47160 * 150.00205 * 3 2 1 7 7 C 1.38797 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00443 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99828 * 179.97438 * 7 2 1 10 10 C 1.80997 * 100.00365 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47641 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47326 * 179.97438 * 12 11 10 14 14 C 1.76198 * 100.00092 * 179.97438 * 13 12 11 15 15 N 1.31542 * 126.45130 * 359.69140 * 14 13 12 16 16 N 1.28423 * 110.50029 * 179.81686 * 15 14 13 17 17 N 1.28905 * 110.33647 * 0.45729 * 16 15 14 18 18 N 1.35392 * 126.45378 * 179.97438 * 14 13 12 19 19 C 1.46500 * 127.38392 * 359.96566 * 18 14 13 20 20 C 1.54274 * 110.03300 * 237.90981 * 19 18 14 21 21 C 1.54964 * 104.15927 * 217.13604 * 20 19 18 22 22 C 1.54893 * 102.77933 * 37.88631 * 21 20 19 23 23 C 1.53881 * 110.03417 * 120.69130 * 19 18 14 24 24 H 0.97001 * 119.99667 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47163 * 59.99693 * 10 9 7 26 26 H 1.09001 * 109.46663 * 299.99981 * 10 9 7 27 27 H 1.09002 * 109.47103 * 59.99643 * 11 10 9 28 28 H 1.08998 * 109.46862 * 300.00456 * 11 10 9 29 29 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 30 30 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 31 31 H 1.09003 * 110.01786 * 359.30045 * 19 18 14 32 32 H 1.08998 * 110.48564 * 335.78008 * 20 19 18 33 33 H 1.08992 * 110.48678 * 98.42753 * 20 19 18 34 34 H 1.09001 * 110.72503 * 279.57471 * 21 20 19 35 35 H 1.08999 * 110.92203 * 156.29112 * 21 20 19 36 36 H 1.08995 * 110.49027 * 203.40578 * 22 21 20 37 37 H 1.09004 * 110.59700 * 80.81659 * 22 21 20 38 38 H 1.08996 * 110.03172 * 238.57015 * 23 19 18 39 39 H 1.08996 * 110.02896 * 359.94969 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5958 -3.2363 -0.0008 12 6 5.8615 -4.7430 0.0001 13 16 7.6468 -5.0409 -0.0006 14 6 7.6631 -6.8028 0.0014 15 7 6.6123 -7.5941 0.0085 16 7 6.9766 -8.8255 0.0039 17 7 8.2627 -8.9123 0.0034 18 7 8.7595 -7.5972 0.0012 19 6 10.1628 -7.1764 -0.0014 20 6 10.8885 -7.7641 -1.2294 21 6 12.3040 -8.1113 -0.7029 22 6 12.0189 -8.6355 0.7265 23 6 10.8813 -7.7298 1.2418 24 1 -0.4850 0.8401 0.0004 25 1 3.6434 -3.4318 -0.8906 26 1 3.6441 -3.4313 0.8893 27 1 6.0387 -2.7891 0.8891 28 1 6.0387 -2.7893 -0.8908 29 1 5.4185 -5.1906 -0.8896 30 1 5.4186 -5.1895 0.8903 31 1 10.2260 -6.0883 -0.0157 32 1 10.3805 -8.6630 -1.5786 33 1 10.9484 -7.0242 -2.0274 34 1 12.9322 -7.2212 -0.6696 35 1 12.7670 -8.8865 -1.3133 36 1 12.9035 -8.5314 1.3546 37 1 11.6942 -9.6756 0.6958 38 1 11.2939 -6.9104 1.8302 39 1 10.1857 -8.3107 1.8473 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075075921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:09 Heat of formation + Delta-G solvation = 69.246834 kcal Electronic energy + Delta-G solvation = -20368.066865 eV Core-core repulsion = 17178.003438 eV Total energy + Delta-G solvation = -3190.063427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.06917 -39.41927 -35.84621 -35.05331 -34.66702 -33.40521 -29.86114 -29.49331 -28.66697 -27.81243 -25.35564 -24.53675 -22.88308 -21.73191 -21.48770 -19.63189 -19.19836 -18.02349 -17.64719 -17.09977 -16.76624 -16.58574 -16.53654 -15.69706 -15.56810 -14.91875 -14.70831 -14.45539 -14.17587 -14.00097 -13.79842 -13.60165 -13.44348 -13.15096 -13.01696 -12.91389 -12.31916 -12.27629 -12.21844 -12.09689 -12.08099 -11.99581 -11.87818 -11.75915 -11.64381 -11.64135 -11.32949 -11.14614 -10.57250 -9.11909 -8.96777 -8.49971 -6.21525 -0.44227 -0.29450 0.69606 0.97661 0.98316 1.16692 1.34716 1.49703 1.77288 2.26412 2.68498 2.88128 2.98830 3.33947 3.48451 3.63343 3.81758 3.85876 3.90614 4.05181 4.06971 4.15769 4.29509 4.30887 4.34112 4.50658 4.62160 4.62256 4.72710 4.77350 4.81949 4.92499 4.97591 5.12229 5.16025 5.16465 5.26397 5.37921 5.71355 6.12872 6.93625 7.19711 8.63099 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.032896 B = 0.002239 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.967811 B =12502.140802 C =13105.469458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.034 3.966 3 Si 0.928 3.072 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.224 1.224 7 C -0.524 4.524 8 H 0.049 0.951 9 S -0.208 6.208 10 C -0.070 4.070 11 C -0.077 4.077 12 C -0.105 4.105 13 S 0.087 5.913 14 C 0.204 3.796 15 N -0.360 5.360 16 N -0.064 5.064 17 N -0.090 5.090 18 N -0.346 5.346 19 C 0.132 3.868 20 C -0.132 4.132 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.130 4.130 24 H 0.276 0.724 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.584 -12.717 0.063 33.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.170 4.170 3 Si 0.748 3.252 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.147 1.147 7 C -0.672 4.672 8 H 0.068 0.932 9 S 0.020 5.980 10 C -0.221 4.221 11 C -0.117 4.117 12 C -0.256 4.256 13 S 0.313 5.687 14 C -0.180 4.180 15 N -0.218 5.218 16 N -0.059 5.059 17 N -0.077 5.077 18 N -0.146 5.146 19 C 0.031 3.969 20 C -0.170 4.170 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.169 4.169 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.156 0.844 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 31.429 -12.284 0.077 33.745 hybrid contribution -2.325 -0.946 -0.024 2.510 sum 29.104 -13.229 0.053 31.970 Atomic orbital electron populations 1.70052 1.07795 1.29102 1.49228 1.25844 0.95449 1.02979 0.92776 0.85683 0.80857 0.78369 0.80246 1.18564 1.19068 1.14702 1.22362 0.90302 0.96204 1.58295 0.93233 1.83725 1.07258 1.09425 1.97589 1.23082 0.99195 0.95596 1.04179 1.21007 0.93313 0.92053 1.05319 1.23750 0.93141 1.00574 1.08157 1.85489 1.10571 0.82285 1.90316 1.28211 0.86076 1.03227 1.00494 1.74883 1.25556 0.96136 1.25180 1.77867 1.04790 1.12284 1.10994 1.82298 1.04522 0.99015 1.21865 1.52103 1.08985 1.03092 1.50449 1.23065 0.72299 1.01907 0.99608 1.22820 0.96946 1.01539 0.95729 1.22497 0.94509 1.02580 0.95509 1.22364 0.97834 0.98628 0.97061 1.22566 0.97920 1.01205 0.95166 0.91464 0.91231 0.91205 0.89043 0.89019 0.88050 0.88049 0.84397 0.91919 0.88696 0.88712 0.89957 0.89022 0.92269 0.87445 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.63 13.97 21.65 0.30 -56.33 16 2 C 0.03 1.98 5.50 84.86 0.47 2.44 16 3 Si 0.93 43.01 27.74 68.60 1.90 44.91 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.22 -9.79 6.74 99.48 0.67 -9.12 16 7 C -0.52 -30.31 10.04 67.95 0.68 -29.62 16 8 H 0.05 3.14 8.03 -2.91 -0.02 3.12 16 9 S -0.21 -9.43 19.41 -56.49 -1.10 -10.52 16 10 C -0.07 -2.45 5.67 71.98 0.41 -2.04 16 11 C -0.08 -1.85 5.22 30.59 0.16 -1.69 16 12 C -0.11 -2.23 5.23 71.98 0.38 -1.85 16 13 S 0.09 1.48 21.47 -56.49 -1.21 0.27 16 14 C 0.20 4.66 8.15 179.85 1.47 6.12 16 15 N -0.36 -10.54 11.57 -57.41 -0.66 -11.20 16 16 N -0.06 -1.97 13.38 37.02 0.50 -1.47 16 17 N -0.09 -2.36 13.55 37.02 0.50 -1.86 16 18 N -0.35 -7.05 3.24 -323.84 -1.05 -8.10 16 19 C 0.13 1.56 3.80 45.72 0.17 1.73 16 20 C -0.13 -1.29 6.53 31.70 0.21 -1.08 16 21 C -0.11 -0.62 6.91 31.91 0.22 -0.40 16 22 C -0.12 -0.89 6.83 31.67 0.22 -0.67 16 23 C -0.13 -1.28 6.57 31.32 0.21 -1.07 16 24 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 26 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.10 2.25 8.14 -2.39 -0.02 2.24 16 31 H 0.14 1.07 7.36 -2.39 -0.02 1.05 16 32 H 0.06 0.92 7.78 -2.39 -0.02 0.90 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.20 8.14 -2.39 -0.02 0.19 16 35 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.06 0.83 7.88 -2.39 -0.02 0.81 16 Total: -1.00 -71.49 352.79 4.76 -66.73 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.00 Total: 5.71 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 4.58 Total: -28.13 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -0.41 Total: -78.96 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.90 Total: 44.91 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -2.31 Total: -10.26 kcal Total: -71.49 4.76 -66.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.972 kcal (2) G-P(sol) polarization free energy of solvation -71.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds