Wall clock time and date at job start Tue Mar 31 2020 10:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29363 * 124.67385 * 2 1 4 4 C 1.30948 * 117.49775 * 179.74446 * 3 2 1 5 5 C 1.37111 * 113.83899 * 0.48167 * 4 3 2 6 6 C 1.41694 * 126.18877 * 179.82423 * 5 4 3 7 7 C 1.35613 * 119.99724 * 179.71620 * 6 5 4 8 8 C 1.41456 * 120.00091 * 179.72573 * 7 6 5 9 9 O 1.21798 * 119.99932 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00277 * 179.97438 * 8 7 6 11 11 C 1.39048 * 120.00048 * 176.67371 * 10 8 7 12 12 C 1.39531 * 119.83991 * 217.61970 * 11 10 8 13 13 C 1.36348 * 120.16506 * 179.76323 * 12 11 10 14 14 C 1.40884 * 119.83124 * 0.51468 * 13 12 11 15 15 C 1.41128 * 120.15882 * 179.71680 * 14 13 12 16 16 H 1.07999 * 119.99572 * 157.86977 * 15 14 13 17 17 C 1.39905 * 119.99855 * 337.87695 * 15 14 13 18 18 N 1.30876 * 120.00247 * 327.61173 * 17 15 14 19 19 Si 1.86796 * 119.99566 * 147.61278 * 17 15 14 20 20 H 1.48504 * 109.47285 * 94.98894 * 19 17 15 21 21 H 1.48508 * 109.46968 * 214.98212 * 19 17 15 22 22 H 1.48498 * 109.47766 * 334.98175 * 19 17 15 23 23 C 1.40886 * 119.68102 * 359.74327 * 14 13 12 24 24 C 1.36346 * 119.83380 * 359.97438 * 23 14 13 25 25 S 1.70918 * 124.67160 * 180.02562 * 2 1 3 26 26 H 1.08993 * 109.47335 * 269.97879 * 1 2 3 27 27 H 1.09004 * 109.47009 * 29.98446 * 1 2 3 28 28 H 1.09001 * 109.46727 * 149.97603 * 1 2 3 29 29 H 1.08000 * 123.08186 * 180.31228 * 4 3 2 30 30 H 1.08000 * 119.99738 * 359.44081 * 6 5 4 31 31 H 1.08000 * 119.99950 * 359.72443 * 7 6 5 32 32 H 0.96999 * 119.99751 * 356.67745 * 10 8 7 33 33 H 1.08007 * 119.91762 * 0.02562 * 12 11 10 34 34 H 1.08005 * 120.08492 * 180.26134 * 13 12 11 35 35 H 0.96996 * 119.99592 * 179.97438 * 18 17 15 36 36 H 1.08005 * 120.08200 * 179.97438 * 23 14 13 37 37 H 1.07999 * 119.91522 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2430 1.0639 0.0000 4 6 3.5422 0.9003 0.0052 5 6 3.9354 -0.4132 -0.0006 6 6 5.2708 -0.8867 -0.0005 7 6 5.5173 -2.2203 -0.0009 8 6 6.8505 -2.6931 -0.0067 9 8 7.7770 -1.9026 -0.0119 10 7 7.0955 -4.0185 -0.0065 11 6 8.4037 -4.4837 -0.0820 12 6 8.6918 -5.6279 -0.8269 13 6 9.9729 -6.0871 -0.9094 14 6 11.0054 -5.4094 -0.2315 15 6 12.3330 -5.8822 -0.3073 16 1 13.1568 -5.2119 -0.1115 17 6 12.5817 -7.2190 -0.6363 18 7 11.7375 -8.1506 -0.2724 19 14 14.1189 -7.6743 -1.5951 20 1 15.1909 -8.0769 -0.6496 21 1 13.8153 -8.8045 -2.5094 22 1 14.5724 -6.5039 -2.3885 23 6 10.7060 -4.2579 0.5231 24 6 9.4211 -3.8071 0.5918 25 16 2.4793 -1.4057 -0.0006 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 4.2401 1.7245 0.0106 30 1 6.0923 -0.1857 -0.0048 31 1 4.6957 -2.9213 0.0034 32 1 6.3593 -4.6478 0.0464 33 1 7.8985 -6.1487 -1.3427 34 1 10.1951 -6.9705 -1.4898 35 1 11.9099 -9.0773 -0.5009 36 1 11.4925 -3.7336 1.0457 37 1 9.1901 -2.9247 1.1701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112230739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:17 Heat of formation + Delta-G solvation = 42.548232 kcal Electronic energy + Delta-G solvation = -21260.870776 eV Core-core repulsion = 17901.912909 eV Total energy + Delta-G solvation = -3358.957868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.05583 -39.70455 -37.37577 -34.94324 -34.31809 -33.05619 -31.78643 -29.62645 -29.32193 -28.16834 -25.38307 -24.41925 -22.94365 -21.40554 -20.58270 -19.89755 -19.53638 -17.99878 -17.43600 -16.97296 -16.38722 -15.38815 -15.32846 -15.20858 -14.56167 -14.32505 -14.14701 -13.90629 -13.67473 -13.21372 -13.05827 -12.77104 -12.68320 -12.42367 -12.10084 -11.99049 -11.54108 -11.49544 -11.16079 -10.96175 -10.92489 -10.54692 -10.21164 -10.02435 -9.74517 -9.48386 -9.46652 -9.09995 -8.70591 -8.40868 -7.55905 -7.15089 -6.89370 -4.28118 -0.27294 0.92712 1.35232 1.54531 2.56280 2.72787 3.03104 3.04939 3.10377 3.18892 3.73339 3.77915 3.87762 3.90178 4.49584 4.61643 4.80030 4.88172 4.96824 4.98669 5.03120 5.39581 5.46639 5.66650 5.81179 6.01659 6.11257 6.19318 6.42945 6.76627 6.96288 6.98664 7.13666 7.28140 7.35877 7.55875 7.69131 7.88690 8.01031 8.24141 8.28460 8.53557 8.76285 8.82305 8.99078 9.99981 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.047879 B = 0.002073 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.669446 B =13501.354736 C =13876.819608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.035 3.965 3 N -0.476 5.476 4 C 0.070 3.930 5 C -0.212 4.212 6 C 0.001 3.999 7 C -0.193 4.193 8 C 0.528 3.472 9 O -0.540 6.540 10 N -0.640 5.640 11 C -0.024 4.024 12 C -0.101 4.101 13 C -0.172 4.172 14 C 0.113 3.887 15 C -0.464 4.464 16 H 0.082 0.918 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.896 3.104 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.224 4.224 24 C -0.063 4.063 25 S 0.156 5.844 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.184 0.816 30 H 0.152 0.848 31 H 0.120 0.880 32 H 0.394 0.606 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.283 0.717 36 H 0.095 0.905 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.764 8.524 -0.133 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.239 4.239 3 N -0.190 5.190 4 C -0.086 4.086 5 C -0.333 4.333 6 C -0.021 4.021 7 C -0.217 4.217 8 C 0.319 3.681 9 O -0.421 6.421 10 N -0.282 5.282 11 C -0.116 4.116 12 C -0.121 4.121 13 C -0.191 4.191 14 C 0.110 3.890 15 C -0.491 4.491 16 H 0.100 0.900 17 C -0.134 4.134 18 N -0.391 5.391 19 Si 0.720 3.280 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.244 4.244 24 C -0.083 4.083 25 S 0.413 5.587 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.201 0.799 30 H 0.170 0.830 31 H 0.138 0.862 32 H 0.228 0.772 33 H 0.107 0.893 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.751 8.237 -0.131 21.400 hybrid contribution 0.894 -0.058 -0.396 0.980 sum -18.857 8.179 -0.527 20.561 Atomic orbital electron populations 1.20478 0.85073 1.04365 1.04016 1.27268 1.02054 0.91254 1.03332 1.66005 1.05294 1.31481 1.16188 1.22636 0.90925 0.95262 0.99748 1.23981 0.97919 0.96681 1.14748 1.20545 0.92574 0.96285 0.92692 1.22157 0.97266 0.96109 1.06187 1.16882 0.89122 0.83045 0.79080 1.90831 1.45996 1.55043 1.50182 1.42870 1.08013 1.06302 1.70983 1.17040 0.83029 1.01277 1.10299 1.20182 0.96658 0.96358 0.98915 1.20614 0.91807 1.02354 1.04358 1.17607 0.93004 0.90351 0.88040 1.19519 0.93329 0.94640 1.41635 0.89952 1.25954 0.98025 0.96229 0.93223 1.69947 1.36012 1.01965 1.31189 0.86502 0.81811 0.79172 0.80551 1.19436 1.19875 1.18064 1.20602 0.95032 1.02196 1.06619 1.20313 0.92713 0.97958 0.97325 1.83951 0.97090 1.11376 1.66236 0.89417 0.89152 0.89964 0.79883 0.83018 0.86236 0.77204 0.89261 0.87480 0.90568 0.88705 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.46 36.01 0.38 -0.03 16 2 C 0.03 0.30 7.37 -13.32 -0.10 0.21 16 3 N -0.48 -5.10 10.50 -11.17 -0.12 -5.22 16 4 C 0.07 0.72 11.38 -18.34 -0.21 0.51 16 5 C -0.21 -2.24 6.26 -38.67 -0.24 -2.48 16 6 C 0.00 0.02 9.39 -39.20 -0.37 -0.35 16 7 C -0.19 -2.53 9.31 -39.30 -0.37 -2.90 16 8 C 0.53 9.36 7.36 -15.03 -0.11 9.25 16 9 O -0.54 -11.64 13.72 5.10 0.07 -11.57 16 10 N -0.64 -11.51 5.28 -12.38 -0.07 -11.58 16 11 C -0.02 -0.54 6.25 -83.62 -0.52 -1.07 16 12 C -0.10 -2.32 9.90 -39.78 -0.39 -2.71 16 13 C -0.17 -4.39 8.74 -39.26 -0.34 -4.74 16 14 C 0.11 3.02 5.57 -106.80 -0.59 2.43 16 15 C -0.46 -12.25 8.94 -37.86 -0.34 -12.59 16 16 H 0.08 2.11 8.02 -52.49 -0.42 1.69 16 17 C 0.09 2.16 4.77 -17.34 -0.08 2.07 16 18 N -0.77 -19.31 11.79 55.55 0.65 -18.66 16 19 Si 0.90 18.15 29.66 -169.99 -5.04 13.10 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 C -0.22 -5.76 9.74 -39.26 -0.38 -6.14 16 24 C -0.06 -1.54 8.59 -39.78 -0.34 -1.88 16 25 S 0.16 1.35 21.92 -107.50 -2.36 -1.01 16 26 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.15 1.87 7.46 -52.49 -0.39 1.48 16 31 H 0.12 1.25 7.10 -52.49 -0.37 0.87 16 32 H 0.39 5.59 8.78 -40.82 -0.36 5.23 16 33 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.11 2.77 6.53 -52.48 -0.34 2.43 16 35 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 36 H 0.09 2.31 8.06 -52.48 -0.42 1.89 16 37 H 0.10 2.47 6.45 -52.49 -0.34 2.13 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -31.40 339.44 -9.65 -41.06 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -3.90 Total: 9.19 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -4.02 Total: -20.42 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.47 Total: -35.46 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.07 Total: -11.57 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.04 Total: 13.10 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.36 Total: -1.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.40 -9.65 -41.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112230739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.603 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds