Wall clock time and date at job start Tue Mar 31 2020 10:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29363 * 124.67385 * 2 1 4 4 C 1.30948 * 117.49775 * 179.74446 * 3 2 1 5 5 C 1.37111 * 113.83899 * 0.48167 * 4 3 2 6 6 C 1.41694 * 126.18877 * 179.82423 * 5 4 3 7 7 C 1.35613 * 119.99724 * 179.71620 * 6 5 4 8 8 C 1.41456 * 120.00091 * 179.72573 * 7 6 5 9 9 O 1.21798 * 119.99932 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00277 * 179.97438 * 8 7 6 11 11 C 1.39048 * 120.00048 * 176.67371 * 10 8 7 12 12 C 1.39531 * 119.83991 * 217.61970 * 11 10 8 13 13 C 1.36348 * 120.16506 * 179.76323 * 12 11 10 14 14 C 1.40884 * 119.83124 * 0.51468 * 13 12 11 15 15 C 1.41128 * 120.15882 * 179.71680 * 14 13 12 16 16 H 1.07999 * 119.99572 * 157.86977 * 15 14 13 17 17 C 1.39905 * 119.99855 * 337.87695 * 15 14 13 18 18 N 1.30876 * 120.00247 * 327.61173 * 17 15 14 19 19 Si 1.86796 * 119.99566 * 147.61278 * 17 15 14 20 20 H 1.48504 * 109.47285 * 94.98894 * 19 17 15 21 21 H 1.48508 * 109.46968 * 214.98212 * 19 17 15 22 22 H 1.48498 * 109.47766 * 334.98175 * 19 17 15 23 23 C 1.40886 * 119.68102 * 359.74327 * 14 13 12 24 24 C 1.36346 * 119.83380 * 359.97438 * 23 14 13 25 25 S 1.70918 * 124.67160 * 180.02562 * 2 1 3 26 26 H 1.08993 * 109.47335 * 269.97879 * 1 2 3 27 27 H 1.09004 * 109.47009 * 29.98446 * 1 2 3 28 28 H 1.09001 * 109.46727 * 149.97603 * 1 2 3 29 29 H 1.08000 * 123.08186 * 180.31228 * 4 3 2 30 30 H 1.08000 * 119.99738 * 359.44081 * 6 5 4 31 31 H 1.08000 * 119.99950 * 359.72443 * 7 6 5 32 32 H 0.96999 * 119.99751 * 356.67745 * 10 8 7 33 33 H 1.08007 * 119.91762 * 0.02562 * 12 11 10 34 34 H 1.08005 * 120.08492 * 180.26134 * 13 12 11 35 35 H 0.96996 * 119.99592 * 179.97438 * 18 17 15 36 36 H 1.08005 * 120.08200 * 179.97438 * 23 14 13 37 37 H 1.07999 * 119.91522 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2430 1.0639 0.0000 4 6 3.5422 0.9003 0.0052 5 6 3.9354 -0.4132 -0.0006 6 6 5.2708 -0.8867 -0.0005 7 6 5.5173 -2.2203 -0.0009 8 6 6.8505 -2.6931 -0.0067 9 8 7.7770 -1.9026 -0.0119 10 7 7.0955 -4.0185 -0.0065 11 6 8.4037 -4.4837 -0.0820 12 6 8.6918 -5.6279 -0.8269 13 6 9.9729 -6.0871 -0.9094 14 6 11.0054 -5.4094 -0.2315 15 6 12.3330 -5.8822 -0.3073 16 1 13.1568 -5.2119 -0.1115 17 6 12.5817 -7.2190 -0.6363 18 7 11.7375 -8.1506 -0.2724 19 14 14.1189 -7.6743 -1.5951 20 1 15.1909 -8.0769 -0.6496 21 1 13.8153 -8.8045 -2.5094 22 1 14.5724 -6.5039 -2.3885 23 6 10.7060 -4.2579 0.5231 24 6 9.4211 -3.8071 0.5918 25 16 2.4793 -1.4057 -0.0006 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8898 -0.5142 29 1 4.2401 1.7245 0.0106 30 1 6.0923 -0.1857 -0.0048 31 1 4.6957 -2.9213 0.0034 32 1 6.3593 -4.6478 0.0464 33 1 7.8985 -6.1487 -1.3427 34 1 10.1951 -6.9705 -1.4898 35 1 11.9099 -9.0773 -0.5009 36 1 11.4925 -3.7336 1.0457 37 1 9.1901 -2.9247 1.1701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112230739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:17 Heat of formation + Delta-G solvation = 23.947208 kcal Electronic energy + Delta-G solvation = -21261.677377 eV Core-core repulsion = 17901.912909 eV Total energy + Delta-G solvation = -3359.764469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33071 -40.69786 -39.15347 -36.34482 -35.61705 -34.80652 -32.50344 -31.48895 -31.00723 -29.23080 -26.93112 -25.35600 -24.17974 -23.14900 -22.28300 -20.93152 -20.66347 -19.32176 -18.97964 -18.11895 -17.91143 -17.03806 -16.33137 -16.18590 -15.94565 -15.76855 -15.39717 -15.08097 -14.89695 -14.42624 -14.36343 -13.98073 -13.81393 -13.64948 -13.50953 -13.35122 -13.07277 -12.83843 -12.68678 -12.34280 -12.30595 -11.92563 -11.82205 -11.58924 -11.19590 -10.90828 -10.67323 -10.47382 -10.16281 -9.49046 -9.32563 -8.98052 -8.71794 -6.23694 -1.10842 0.22251 0.54960 0.62706 0.94102 1.13348 1.37952 1.45793 1.56573 1.80181 2.19427 2.40369 2.48231 2.68508 3.17813 3.68816 3.82130 3.96362 4.04189 4.15712 4.33454 4.39377 4.51017 4.62049 4.67136 4.88854 4.97760 5.02870 5.08769 5.13121 5.17842 5.22723 5.28745 5.44527 5.63918 5.88123 6.02298 6.09240 6.34770 6.60540 6.62803 6.74708 6.88090 6.98206 7.41397 8.19685 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.047879 B = 0.002073 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.669446 B =13501.354736 C =13876.819608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.043 3.957 3 N -0.507 5.507 4 C 0.082 3.918 5 C -0.251 4.251 6 C 0.035 3.965 7 C -0.218 4.218 8 C 0.533 3.467 9 O -0.586 6.586 10 N -0.637 5.637 11 C -0.010 4.010 12 C -0.100 4.100 13 C -0.190 4.190 14 C 0.083 3.917 15 C -0.504 4.504 16 H 0.075 0.925 17 C 0.052 3.948 18 N -0.797 5.797 19 Si 0.972 3.028 20 H -0.259 1.259 21 H -0.260 1.260 22 H -0.262 1.262 23 C -0.246 4.246 24 C -0.076 4.076 25 S 0.193 5.807 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.198 0.802 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.416 0.584 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.295 0.705 36 H 0.092 0.908 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.516 8.353 -0.824 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.230 4.230 3 N -0.222 5.222 4 C -0.075 4.075 5 C -0.372 4.372 6 C 0.012 3.988 7 C -0.241 4.241 8 C 0.326 3.674 9 O -0.470 6.470 10 N -0.281 5.281 11 C -0.103 4.103 12 C -0.120 4.120 13 C -0.210 4.210 14 C 0.080 3.920 15 C -0.531 4.531 16 H 0.093 0.907 17 C -0.168 4.168 18 N -0.421 5.421 19 Si 0.792 3.208 20 H -0.184 1.184 21 H -0.184 1.184 22 H -0.186 1.186 23 C -0.266 4.266 24 C -0.096 4.096 25 S 0.451 5.549 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.215 0.785 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.253 0.747 33 H 0.142 0.858 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.557 8.036 -0.809 23.960 hybrid contribution 1.410 0.222 -0.124 1.433 sum -21.147 8.258 -0.933 22.721 Atomic orbital electron populations 1.20726 0.82514 1.05695 1.05421 1.28030 1.03666 0.91030 1.00256 1.66127 1.05512 1.32476 1.18097 1.22985 0.91312 0.95709 0.97490 1.23906 0.98031 0.97523 1.17693 1.20549 0.93275 0.95789 0.89154 1.21881 0.95316 0.96924 1.10020 1.17507 0.90436 0.82296 0.77149 1.90812 1.47867 1.56026 1.52257 1.42766 1.06797 1.07142 1.71408 1.17110 0.84706 1.00312 1.08222 1.20462 0.96628 0.96390 0.98472 1.20650 0.92826 1.02529 1.04960 1.17923 0.93926 0.91153 0.88951 1.19708 0.93182 0.95886 1.44368 0.90685 1.26739 1.01427 0.95363 0.93290 1.69940 1.37843 1.02707 1.31569 0.85362 0.77633 0.78795 0.78992 1.18367 1.18403 1.18599 1.20729 0.95808 1.02678 1.07371 1.20428 0.92923 0.98244 0.97958 1.83805 0.95478 1.10395 1.65181 0.87776 0.88716 0.87754 0.78546 0.83993 0.83336 0.74706 0.85816 0.88262 0.89419 0.88981 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.46 71.24 0.74 0.19 16 2 C 0.04 0.63 7.37 88.47 0.65 1.28 16 3 N -0.51 -9.72 10.50 -189.26 -1.99 -11.71 16 4 C 0.08 1.53 11.38 84.56 0.96 2.49 16 5 C -0.25 -4.79 6.26 22.86 0.14 -4.65 16 6 C 0.03 0.79 9.39 22.52 0.21 1.00 16 7 C -0.22 -5.38 9.31 22.45 0.21 -5.17 16 8 C 0.53 18.60 7.36 85.03 0.63 19.22 16 9 O -0.59 -25.68 13.72 -4.66 -0.06 -25.74 16 10 N -0.64 -22.24 5.28 -311.26 -1.64 -23.88 16 11 C -0.01 -0.45 6.25 38.62 0.24 -0.21 16 12 C -0.10 -4.55 9.90 22.14 0.22 -4.33 16 13 C -0.19 -9.95 8.74 22.48 0.20 -9.75 16 14 C 0.08 4.65 5.57 -21.27 -0.12 4.54 16 15 C -0.50 -27.78 8.94 23.38 0.21 -27.57 16 16 H 0.08 4.06 8.02 -2.91 -0.02 4.04 16 17 C 0.05 2.58 4.77 85.24 0.41 2.98 16 18 N -0.80 -40.65 11.79 21.82 0.26 -40.39 16 19 Si 0.97 37.56 29.66 68.60 2.03 39.59 16 20 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 21 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 C -0.25 -13.26 9.74 22.48 0.22 -13.04 16 24 C -0.08 -3.80 8.59 22.14 0.19 -3.61 16 25 S 0.19 2.75 21.92 -56.49 -1.24 1.51 16 26 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.14 3.47 7.46 -2.91 -0.02 3.45 16 31 H 0.15 2.69 7.10 -2.91 -0.02 2.67 16 32 H 0.42 10.88 8.78 -92.71 -0.81 10.07 16 33 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.10 5.26 6.53 -2.91 -0.02 5.24 16 35 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 36 H 0.09 4.81 8.06 -2.91 -0.02 4.78 16 37 H 0.10 5.05 6.45 -2.91 -0.02 5.04 16 Total: -1.00 -70.50 339.44 2.78 -67.72 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.31 Total: 29.54 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 5.11 Total: -36.64 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -3.37 Total: -75.98 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.06 Total: -25.74 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.24 Total: 1.51 kcal Total: -70.50 2.78 -67.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112230739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.670 kcal (2) G-P(sol) polarization free energy of solvation -70.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds