Wall clock time and date at job start Tue Mar 31 2020 10:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81394 * 102.99814 * 2 1 4 4 C 1.53000 * 109.46850 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.47024 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00029 * 179.97438 * 5 4 3 7 7 O 1.21599 * 119.99620 * 0.02562 * 6 5 4 8 8 N 1.34767 * 120.00090 * 180.27931 * 6 5 4 9 9 C 1.40139 * 120.00166 * 174.05510 * 8 6 5 10 10 C 1.38694 * 120.07569 * 335.22867 * 9 8 6 11 11 C 1.38190 * 120.02125 * 179.72052 * 10 9 8 12 12 C 1.38543 * 120.17678 * 0.55476 * 11 10 9 13 13 F 1.35104 * 119.92585 * 179.74389 * 12 11 10 14 14 C 1.38342 * 120.14999 * 359.72038 * 12 11 10 15 15 C 1.38739 * 119.97517 * 359.97438 * 14 12 11 16 16 O 1.35785 * 120.08464 * 180.02562 * 15 14 12 17 17 C 1.34808 * 117.00032 * 5.20138 * 16 15 14 18 18 H 1.07991 * 120.00000 * 354.97917 * 17 16 15 19 19 C 1.38629 * 119.99616 * 174.97799 * 17 16 15 20 20 N 1.31580 * 119.99988 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00383 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47032 * 90.00075 * 21 19 17 23 23 H 1.48503 * 109.47125 * 210.00139 * 21 19 17 24 24 H 1.48498 * 109.47174 * 330.00406 * 21 19 17 25 25 H 1.08996 * 109.47451 * 300.00540 * 1 2 3 26 26 H 1.08999 * 109.47336 * 60.00290 * 1 2 3 27 27 H 1.09005 * 109.47477 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47517 * 59.99787 * 3 2 1 29 29 H 1.09010 * 109.47179 * 299.99628 * 3 2 1 30 30 H 1.09000 * 109.47446 * 60.00314 * 4 3 2 31 31 H 1.08999 * 109.47063 * 299.99286 * 4 3 2 32 32 H 0.96996 * 120.00024 * 0.02562 * 5 4 3 33 33 H 0.97005 * 120.00031 * 354.04934 * 8 6 5 34 34 H 1.08004 * 119.98620 * 359.97438 * 10 9 8 35 35 H 1.08007 * 119.91464 * 180.25267 * 11 10 9 36 36 H 1.08002 * 120.01311 * 180.02562 * 14 12 11 37 37 H 0.96994 * 120.00215 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 7 4.0718 3.3674 -0.0013 6 6 5.3607 3.7615 -0.0014 7 8 6.2500 2.9321 -0.0014 8 7 5.6639 5.0746 0.0037 9 6 6.9978 5.4853 0.1293 10 6 7.9252 4.6569 0.7435 11 6 9.2416 5.0605 0.8616 12 6 9.6369 6.2972 0.3780 13 9 10.9240 6.6889 0.5008 14 6 8.7166 7.1316 -0.2308 15 6 7.3948 6.7300 -0.3584 16 8 6.4898 7.5471 -0.9561 17 6 6.9602 8.6875 -1.4998 18 1 7.9992 8.9554 -1.3777 19 6 6.1100 9.5161 -2.2156 20 7 6.5692 10.6290 -2.7467 21 14 4.3130 9.0523 -2.4274 22 1 3.5199 9.6201 -1.3076 23 1 3.8101 9.5948 -3.7151 24 1 4.1802 7.5732 -2.4277 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8031 2.2371 0.8899 29 1 1.8031 2.2371 -0.8901 30 1 4.1608 1.4704 -0.8909 31 1 4.1615 1.4703 0.8892 32 1 3.3624 4.0289 -0.0008 33 1 4.9587 5.7355 -0.0796 34 1 7.6193 3.6942 1.1260 35 1 9.9632 4.4123 1.3366 36 1 9.0272 8.0950 -0.6074 37 1 5.9743 11.2090 -3.2473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135266200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:37 Heat of formation + Delta-G solvation = -68.381165 kcal Electronic energy + Delta-G solvation = -23079.080294 eV Core-core repulsion = 19284.542941 eV Total energy + Delta-G solvation = -3794.537352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.26390 -40.47133 -38.99971 -36.71655 -35.41642 -34.25093 -32.51806 -31.00434 -29.56789 -29.36628 -28.16954 -25.44913 -23.76671 -22.38068 -21.63743 -20.76718 -18.55352 -18.28668 -17.85397 -16.99281 -16.45780 -16.09803 -15.58013 -15.43385 -15.28828 -15.02675 -14.68311 -14.29931 -14.14222 -14.11317 -13.89210 -13.76566 -13.51148 -13.26069 -12.87712 -12.48328 -12.40300 -12.24520 -12.13015 -11.86403 -11.49622 -11.01264 -10.82986 -10.49782 -10.48273 -10.02957 -9.80368 -9.58235 -9.21325 -9.02159 -8.11228 -7.96579 -7.19223 -6.55444 -4.22701 1.08810 1.76028 2.01785 2.09905 2.79407 3.07687 3.10560 3.19542 3.25836 4.06472 4.25892 4.27451 4.32088 4.47901 4.53076 4.68535 4.70566 4.93865 4.97917 4.99974 5.25547 5.46052 5.47118 5.59307 5.69516 5.89486 6.04215 6.25439 6.43684 6.59431 6.81153 6.88050 6.96305 7.07026 7.45566 7.64360 7.86468 8.03065 8.62414 8.77536 9.32419 10.51964 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003598 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.078541 B = 7779.853514 C =10117.729040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.240 6.240 3 C -0.105 4.105 4 C 0.157 3.843 5 N -0.746 5.746 6 C 0.705 3.295 7 O -0.576 6.576 8 N -0.666 5.666 9 C 0.084 3.916 10 C -0.063 4.063 11 C -0.216 4.216 12 C 0.124 3.876 13 F -0.149 7.149 14 C -0.242 4.242 15 C 0.161 3.839 16 O -0.212 6.212 17 C -0.390 4.390 18 H 0.109 0.891 19 C 0.065 3.935 20 N -0.873 5.873 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.261 1.261 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.397 0.603 33 H 0.409 0.591 34 H 0.151 0.849 35 H 0.125 0.875 36 H 0.149 0.851 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.583 -15.167 6.234 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.016 6.016 3 C -0.254 4.254 4 C 0.032 3.968 5 N -0.403 5.403 6 C 0.406 3.594 7 O -0.454 6.454 8 N -0.312 5.312 9 C -0.011 4.011 10 C -0.084 4.084 11 C -0.236 4.236 12 C 0.104 3.896 13 F -0.128 7.128 14 C -0.263 4.263 15 C 0.106 3.894 16 O -0.117 6.117 17 C -0.465 4.465 18 H 0.126 0.874 19 C -0.139 4.139 20 N -0.510 5.510 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.185 1.185 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.122 0.878 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.231 0.769 33 H 0.244 0.756 34 H 0.168 0.832 35 H 0.143 0.857 36 H 0.167 0.833 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.408 -16.611 6.064 20.519 hybrid contribution -2.022 1.929 -0.342 2.816 sum -12.430 -14.682 5.722 20.070 Atomic orbital electron populations 1.23418 0.93901 1.06758 1.05116 1.87011 1.07396 1.09064 1.98093 1.23574 0.99933 0.96064 1.05842 1.20743 0.91224 0.80922 1.03893 1.45019 1.06171 1.07885 1.81260 1.15789 0.82876 0.82685 0.78083 1.90883 1.45671 1.51695 1.57141 1.42225 1.07784 1.05732 1.75436 1.16695 0.84058 0.93391 1.06978 1.20810 0.91248 0.99734 0.96564 1.20567 0.97044 0.96444 1.09564 1.17467 0.78071 0.94004 1.00059 1.91426 1.35835 1.91325 1.94204 1.20954 0.92627 1.03197 1.09532 1.18385 0.88353 0.89207 0.93441 1.83483 1.33273 1.30981 1.63980 1.20753 0.98770 0.94691 1.32302 0.87354 1.24466 1.00031 0.94587 0.94808 1.69644 1.36928 1.11268 1.33158 0.86190 0.82974 0.79744 0.77967 1.19766 1.20652 1.18534 0.90334 0.90318 0.87812 0.89208 0.89194 0.90437 0.90408 0.76892 0.75584 0.83179 0.85704 0.83321 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.76 101.05 1.09 0.45 16 2 S -0.24 -1.98 22.38 -107.50 -2.41 -4.38 16 3 C -0.11 -0.77 6.05 37.16 0.22 -0.54 16 4 C 0.16 1.58 5.68 -4.04 -0.02 1.56 16 5 N -0.75 -8.38 5.56 -65.22 -0.36 -8.74 16 6 C 0.71 11.11 8.37 -86.93 -0.73 10.38 16 7 O -0.58 -10.80 13.51 5.28 0.07 -10.73 16 8 N -0.67 -11.12 5.30 -14.07 -0.07 -11.19 16 9 C 0.08 1.63 6.45 -83.44 -0.54 1.09 16 10 C -0.06 -1.16 8.71 -39.43 -0.34 -1.50 16 11 C -0.22 -3.89 10.02 -39.49 -0.40 -4.29 16 12 C 0.12 2.44 7.29 -39.43 -0.29 2.15 16 13 F -0.15 -2.86 17.26 2.25 0.04 -2.82 16 14 C -0.24 -5.23 9.14 -39.36 -0.36 -5.59 16 15 C 0.16 3.51 6.66 -38.94 -0.26 3.25 16 16 O -0.21 -5.06 8.00 0.00 0.00 -5.06 16 17 C -0.39 -10.32 9.95 30.88 0.31 -10.01 16 18 H 0.11 2.99 5.44 -52.49 -0.29 2.70 16 19 C 0.07 1.72 5.49 -17.52 -0.10 1.63 16 20 N -0.87 -24.15 13.96 55.48 0.77 -23.38 16 21 Si 0.91 19.81 28.62 -169.99 -4.86 14.94 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 27 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.09 0.55 8.14 -51.92 -0.42 0.12 16 29 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.40 3.38 8.49 -40.82 -0.35 3.03 16 33 H 0.41 6.20 8.36 -40.82 -0.34 5.86 16 34 H 0.15 2.71 5.79 -52.48 -0.30 2.40 16 35 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 36 H 0.15 3.36 5.63 -52.49 -0.30 3.06 16 37 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -30.17 337.56 -7.24 -37.40 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.09 Total: 10.29 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.41 Total: -1.42 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.34 Total: -43.31 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.07 Total: -15.79 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.86 Total: 14.94 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -2.41 Total: -4.38 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.17 -7.24 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135266200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.976 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds