Wall clock time and date at job start Tue Mar 31 2020 10:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81394 * 102.99814 * 2 1 4 4 C 1.53000 * 109.46850 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.47024 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00029 * 179.97438 * 5 4 3 7 7 O 1.21599 * 119.99620 * 0.02562 * 6 5 4 8 8 N 1.34767 * 120.00090 * 180.27931 * 6 5 4 9 9 C 1.40139 * 120.00166 * 174.05510 * 8 6 5 10 10 C 1.38694 * 120.07569 * 335.22867 * 9 8 6 11 11 C 1.38190 * 120.02125 * 179.72052 * 10 9 8 12 12 C 1.38543 * 120.17678 * 0.55476 * 11 10 9 13 13 F 1.35104 * 119.92585 * 179.74389 * 12 11 10 14 14 C 1.38342 * 120.14999 * 359.72038 * 12 11 10 15 15 C 1.38739 * 119.97517 * 359.97438 * 14 12 11 16 16 O 1.35785 * 120.08464 * 180.02562 * 15 14 12 17 17 C 1.34808 * 117.00032 * 5.20138 * 16 15 14 18 18 H 1.07991 * 120.00000 * 354.97917 * 17 16 15 19 19 C 1.38629 * 119.99616 * 174.97799 * 17 16 15 20 20 N 1.31580 * 119.99988 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00383 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47032 * 90.00075 * 21 19 17 23 23 H 1.48503 * 109.47125 * 210.00139 * 21 19 17 24 24 H 1.48498 * 109.47174 * 330.00406 * 21 19 17 25 25 H 1.08996 * 109.47451 * 300.00540 * 1 2 3 26 26 H 1.08999 * 109.47336 * 60.00290 * 1 2 3 27 27 H 1.09005 * 109.47477 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47517 * 59.99787 * 3 2 1 29 29 H 1.09010 * 109.47179 * 299.99628 * 3 2 1 30 30 H 1.09000 * 109.47446 * 60.00314 * 4 3 2 31 31 H 1.08999 * 109.47063 * 299.99286 * 4 3 2 32 32 H 0.96996 * 120.00024 * 0.02562 * 5 4 3 33 33 H 0.97005 * 120.00031 * 354.04934 * 8 6 5 34 34 H 1.08004 * 119.98620 * 359.97438 * 10 9 8 35 35 H 1.08007 * 119.91464 * 180.25267 * 11 10 9 36 36 H 1.08002 * 120.01311 * 180.02562 * 14 12 11 37 37 H 0.96994 * 120.00215 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 7 4.0718 3.3674 -0.0013 6 6 5.3607 3.7615 -0.0014 7 8 6.2500 2.9321 -0.0014 8 7 5.6639 5.0746 0.0037 9 6 6.9978 5.4853 0.1293 10 6 7.9252 4.6569 0.7435 11 6 9.2416 5.0605 0.8616 12 6 9.6369 6.2972 0.3780 13 9 10.9240 6.6889 0.5008 14 6 8.7166 7.1316 -0.2308 15 6 7.3948 6.7300 -0.3584 16 8 6.4898 7.5471 -0.9561 17 6 6.9602 8.6875 -1.4998 18 1 7.9992 8.9554 -1.3777 19 6 6.1100 9.5161 -2.2156 20 7 6.5692 10.6290 -2.7467 21 14 4.3130 9.0523 -2.4274 22 1 3.5199 9.6201 -1.3076 23 1 3.8101 9.5948 -3.7151 24 1 4.1802 7.5732 -2.4277 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8031 2.2371 0.8899 29 1 1.8031 2.2371 -0.8901 30 1 4.1608 1.4704 -0.8909 31 1 4.1615 1.4703 0.8892 32 1 3.3624 4.0289 -0.0008 33 1 4.9587 5.7355 -0.0796 34 1 7.6193 3.6942 1.1260 35 1 9.9632 4.4123 1.3366 36 1 9.0272 8.0950 -0.6074 37 1 5.9743 11.2090 -3.2473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135266200.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:36 Heat of formation + Delta-G solvation = -88.027126 kcal Electronic energy + Delta-G solvation = -23079.932206 eV Core-core repulsion = 19284.542941 eV Total energy + Delta-G solvation = -3795.389265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.089 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.83706 -41.86919 -40.54844 -38.29057 -36.50750 -35.66599 -34.46724 -31.96691 -31.17509 -29.88226 -29.51877 -27.32496 -24.82697 -23.77110 -23.14149 -22.07013 -20.16120 -19.86986 -19.39352 -18.41847 -17.36604 -17.15121 -17.06244 -16.70613 -16.60436 -16.46800 -15.90892 -15.79630 -15.60918 -15.40131 -15.21584 -14.93611 -14.54073 -14.27302 -14.25487 -13.85279 -13.60266 -13.54904 -13.21392 -12.86580 -12.83615 -12.61539 -12.40708 -12.16486 -11.65986 -11.45397 -11.13617 -10.97598 -10.91964 -10.25260 -9.61111 -8.76151 -8.71741 -8.50964 -6.25369 0.16813 0.40205 0.50269 1.33479 1.39351 1.51803 1.56024 1.70011 1.96021 2.26973 2.65276 2.75724 3.03239 3.16954 3.38853 3.63274 3.88644 3.89739 4.14254 4.27686 4.35722 4.36013 4.38798 4.50467 4.70454 4.79407 4.87925 4.91668 5.07844 5.17026 5.23787 5.36932 5.44958 5.59215 5.81307 5.88298 6.08811 6.80498 6.87555 7.35603 7.45515 8.60106 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.011543 B = 0.003598 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.078541 B = 7779.853514 C =10117.729040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.296 6.296 3 C -0.088 4.088 4 C 0.159 3.841 5 N -0.725 5.725 6 C 0.704 3.296 7 O -0.606 6.606 8 N -0.665 5.665 9 C 0.097 3.903 10 C -0.063 4.063 11 C -0.189 4.189 12 C 0.113 3.887 13 F -0.147 7.147 14 C -0.253 4.253 15 C 0.136 3.864 16 O -0.221 6.221 17 C -0.401 4.401 18 H 0.079 0.921 19 C 0.010 3.990 20 N -0.922 5.922 21 Si 0.974 3.026 22 H -0.259 1.259 23 H -0.277 1.277 24 H -0.249 1.249 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.417 0.583 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.127 0.873 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.907 -17.304 7.191 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.072 6.072 3 C -0.236 4.236 4 C 0.034 3.966 5 N -0.382 5.382 6 C 0.405 3.595 7 O -0.486 6.486 8 N -0.312 5.312 9 C 0.001 3.999 10 C -0.084 4.084 11 C -0.208 4.208 12 C 0.093 3.907 13 F -0.126 7.126 14 C -0.274 4.274 15 C 0.083 3.917 16 O -0.128 6.128 17 C -0.477 4.477 18 H 0.096 0.904 19 C -0.189 4.189 20 N -0.561 5.561 21 Si 0.795 3.205 22 H -0.183 1.183 23 H -0.202 1.202 24 H -0.172 1.172 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.251 0.749 33 H 0.254 0.746 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.145 0.855 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.767 -18.778 7.049 23.776 hybrid contribution -1.174 2.384 -0.519 2.707 sum -13.942 -16.395 6.530 22.490 Atomic orbital electron populations 1.23465 0.90513 1.07670 1.06148 1.87236 1.11190 1.10509 1.98257 1.23436 0.97613 0.95250 1.07351 1.20768 0.93307 0.79659 1.02846 1.44871 1.04989 1.08957 1.79420 1.15904 0.83959 0.81856 0.77801 1.90857 1.47040 1.52238 1.58507 1.42210 1.06911 1.06533 1.75533 1.16819 0.85606 0.92231 1.05279 1.21041 0.91200 0.99892 0.96244 1.20954 0.97518 0.95436 1.06933 1.17504 0.77957 0.94545 1.00698 1.91430 1.35493 1.91420 1.94213 1.20960 0.93456 1.02900 1.10074 1.18675 0.88437 0.90223 0.94331 1.83431 1.33305 1.30557 1.65478 1.20642 0.97906 0.96041 1.33143 0.90363 1.25369 1.04905 0.94298 0.94279 1.69748 1.38827 1.12748 1.34813 0.85176 0.76945 0.80079 0.78327 1.18319 1.20177 1.17213 0.89157 0.89380 0.87001 0.87412 0.87915 0.91908 0.91157 0.74912 0.74625 0.81926 0.82260 0.85517 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.76 113.37 1.22 0.40 16 2 S -0.30 -4.34 22.38 -56.49 -1.26 -5.60 16 3 C -0.09 -1.03 6.05 71.98 0.44 -0.59 16 4 C 0.16 2.86 5.68 86.38 0.49 3.35 16 5 N -0.72 -14.29 5.56 -478.51 -2.66 -16.95 16 6 C 0.70 20.61 8.37 179.06 1.50 22.11 16 7 O -0.61 -21.54 13.51 -4.03 -0.05 -21.59 16 8 N -0.66 -20.90 5.30 -316.70 -1.68 -22.57 16 9 C 0.10 3.64 6.45 38.22 0.25 3.89 16 10 C -0.06 -2.19 8.71 22.37 0.19 -1.99 16 11 C -0.19 -6.32 10.02 22.33 0.22 -6.09 16 12 C 0.11 4.38 7.29 22.37 0.16 4.54 16 13 F -0.15 -5.54 17.26 44.97 0.78 -4.77 16 14 C -0.25 -11.21 9.14 22.41 0.20 -11.01 16 15 C 0.14 5.97 6.66 22.68 0.15 6.12 16 16 O -0.22 -10.69 8.00 -22.91 -0.18 -10.87 16 17 C -0.40 -22.11 9.95 67.91 0.68 -21.44 16 18 H 0.08 4.64 5.44 -2.92 -0.02 4.63 16 19 C 0.01 0.57 5.49 84.82 0.47 1.03 16 20 N -0.92 -52.85 13.96 21.61 0.30 -52.55 16 21 Si 0.97 40.56 28.62 68.60 1.96 42.53 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 23 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 25 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.41 5.58 8.49 -92.71 -0.79 4.79 16 33 H 0.42 11.72 8.36 -92.70 -0.78 10.94 16 34 H 0.16 5.39 5.79 -2.91 -0.02 5.38 16 35 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 36 H 0.13 6.15 5.63 -2.91 -0.02 6.13 16 37 H 0.29 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -67.16 337.56 2.75 -64.41 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.42 Total: 27.66 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 5.97 Total: 0.31 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -4.04 Total: -92.07 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.24 Total: -32.47 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.78 Total: -4.77 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 1.96 Total: 42.53 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -1.26 Total: -5.60 kcal Total: -67.16 2.75 -64.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135266200.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.615 kcal (2) G-P(sol) polarization free energy of solvation -67.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds