Wall clock time and date at job start Tue Mar 31 2020 10:29:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08999 * 109.47277 * 2 1
4 4 C 1.50704 * 109.47447 * 119.99859 * 2 1 3
5 5 H 1.07999 * 120.00012 * 119.99789 * 4 2 1
6 6 C 1.37869 * 119.99921 * 300.27842 * 4 2 1
7 7 N 1.31521 * 120.00040 * 359.71748 * 6 4 2
8 8 Si 1.86800 * 120.00257 * 179.72517 * 6 4 2
9 9 H 1.48498 * 109.47049 * 59.99529 * 8 6 4
10 10 H 1.48497 * 109.47712 * 179.97438 * 8 6 4
11 11 H 1.48506 * 109.46841 * 300.00066 * 8 6 4
12 12 N 1.46497 * 109.47201 * 239.99946 * 2 1 3
13 13 C 1.34779 * 120.00221 * 84.99855 * 12 2 1
14 14 O 1.21589 * 119.99460 * 359.97438 * 13 12 2
15 15 N 1.34767 * 120.00292 * 180.02562 * 13 12 2
16 16 C 1.39940 * 120.00287 * 175.38079 * 15 13 12
17 17 C 1.38909 * 120.05822 * 214.81683 * 16 15 13
18 18 C 1.38107 * 119.97559 * 179.69649 * 17 16 15
19 19 C 1.38261 * 120.09806 * 0.59424 * 18 17 16
20 20 S 1.76196 * 119.94408 * 179.69566 * 19 18 17
21 21 C 1.81407 * 102.99488 * 94.98326 * 20 19 18
22 22 O 1.42093 * 103.00399 * 208.83255 * 20 19 18
23 23 C 1.38486 * 120.11305 * 359.68315 * 19 18 17
24 24 F 1.35102 * 119.99356 * 179.97438 * 23 19 18
25 25 C 1.38361 * 120.02246 * 0.02562 * 23 19 18
26 26 H 1.08994 * 109.47544 * 60.00375 * 1 2 3
27 27 H 1.09005 * 109.46820 * 180.02562 * 1 2 3
28 28 H 1.08999 * 109.46778 * 299.99626 * 1 2 3
29 29 H 0.96997 * 119.99983 * 179.97438 * 7 6 4
30 30 H 0.97004 * 120.00355 * 265.00067 * 12 2 1
31 31 H 0.97002 * 120.00223 * 355.37061 * 15 13 12
32 32 H 1.07994 * 120.00920 * 359.97438 * 17 16 15
33 33 H 1.08005 * 119.94550 * 180.27539 * 18 17 16
34 34 H 1.08992 * 109.47196 * 60.00080 * 21 20 19
35 35 H 1.08999 * 109.46739 * 180.02562 * 21 20 19
36 36 H 1.08997 * 109.46942 * 299.99633 * 21 20 19
37 37 H 1.07995 * 120.04851 * 180.02562 * 25 23 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7104 1.2305
5 1 2.6533 -1.5885 1.1314
6 6 1.6947 -0.2427 2.4827
7 7 0.9386 0.8267 2.6034
8 14 2.3110 -1.1276 4.0079
9 1 3.7960 -1.1283 4.0136
10 1 1.8122 -0.4305 5.2204
11 1 1.8155 -2.5276 4.0021
12 7 2.0183 -0.6906 -1.1961
13 6 2.1471 -0.0183 -2.3572
14 8 1.8574 1.1613 -2.4118
15 7 2.5958 -0.6537 -3.4577
16 6 2.6381 0.0175 -4.6849
17 6 2.3832 -0.6715 -5.8638
18 6 2.4193 -0.0061 -7.0735
19 6 2.7208 1.3427 -7.1142
20 16 2.7735 2.1858 -8.6604
21 6 1.1106 2.8986 -8.7932
22 8 3.7161 3.2231 -8.4270
23 6 2.9812 2.0321 -5.9417
24 9 3.2760 3.3498 -5.9843
25 6 2.9405 1.3716 -4.7266
26 1 -0.3634 0.5137 -0.8899
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 0.7006 1.1555 3.4843
30 1 2.2490 -1.6318 -1.1526
31 1 2.8897 -1.5763 -3.3991
32 1 2.1526 -1.7261 -5.8341
33 1 2.2166 -0.5413 -7.9895
34 1 0.9361 3.5724 -7.9545
35 1 1.0265 3.4525 -9.7282
36 1 0.3702 2.0989 -8.7772
37 1 3.1431 1.9089 -3.8120
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000161138542.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:29:13
Heat of formation + Delta-G solvation = -78.549818 kcal
Electronic energy + Delta-G solvation = -23334.341890 eV
Core-core repulsion = 19539.363592 eV
Total energy + Delta-G solvation = -3794.978298 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.089 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-48.86115 -40.36922 -38.41045 -35.78978 -35.26498 -34.35625 -32.53910 -30.71621
-30.07210 -28.98800 -28.33640 -25.33360 -23.65066 -22.83420 -21.36861 -20.02803
-18.54252 -18.31469 -17.94486 -16.46515 -16.45580 -16.08127 -15.69104 -15.61678
-14.97594 -14.79237 -14.70901 -14.28463 -13.98515 -13.92255 -13.63240 -13.26368
-12.96734 -12.68798 -12.49974 -12.48146 -11.92428 -11.83179 -11.74135 -11.17622
-11.05803 -10.86293 -10.50932 -10.38181 -10.31601 -10.29924 -9.60989 -9.14791
-8.85089 -8.71114 -8.63557 -8.38423 -7.98343 -6.19377 -4.29551 0.69127
1.15512 1.69938 2.48827 2.89554 3.20918 3.26889 3.27827 3.28805
3.71049 3.79156 4.21178 4.28791 4.61930 4.79845 4.92192 4.99372
5.08292 5.13217 5.24664 5.43770 5.72102 5.78311 5.80655 5.96319
6.18063 6.44216 6.68751 6.87342 6.91926 6.97532 7.09223 7.31753
7.53085 7.71042 7.87229 8.06529 8.58725 8.72029 9.05066 9.38270
10.86616
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.034094 B = 0.002636 C = 0.002579
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 821.060917 B =10619.415564 C =10852.284541
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.280 3.720
3 H 0.050 0.950
4 C -0.537 4.537
5 H 0.061 0.939
6 C 0.067 3.933
7 N -0.882 5.882
8 Si 0.904 3.096
9 H -0.276 1.276
10 H -0.285 1.285
11 H -0.276 1.276
12 N -0.714 5.714
13 C 0.690 3.310
14 O -0.577 6.577
15 N -0.694 5.694
16 C 0.247 3.753
17 C -0.186 4.186
18 C 0.002 3.998
19 C -0.532 4.532
20 S 1.339 4.661
21 C -0.501 4.501
22 O -0.849 6.849
23 C 0.182 3.818
24 F -0.121 7.121
25 C -0.178 4.178
26 H 0.015 0.985
27 H 0.027 0.973
28 H 0.092 0.908
29 H 0.266 0.734
30 H 0.388 0.612
31 H 0.408 0.592
32 H 0.137 0.863
33 H 0.147 0.853
34 H 0.082 0.918
35 H 0.104 0.896
36 H 0.111 0.889
37 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.144 -7.073 -23.724 24.783
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.178 3.822
3 H 0.068 0.932
4 C -0.576 4.576
5 H 0.080 0.920
6 C -0.137 4.137
7 N -0.519 5.519
8 Si 0.731 3.269
9 H -0.201 1.201
10 H -0.211 1.211
11 H -0.201 1.201
12 N -0.365 5.365
13 C 0.390 3.610
14 O -0.454 6.454
15 N -0.342 5.342
16 C 0.148 3.852
17 C -0.208 4.208
18 C -0.018 4.018
19 C -0.630 4.630
20 S 1.535 4.465
21 C -0.657 4.657
22 O -0.844 6.844
23 C 0.161 3.839
24 F -0.099 7.099
25 C -0.201 4.201
26 H 0.034 0.966
27 H 0.046 0.954
28 H 0.110 0.890
29 H 0.076 0.924
30 H 0.220 0.780
31 H 0.244 0.756
32 H 0.154 0.846
33 H 0.165 0.835
34 H 0.101 0.899
35 H 0.122 0.878
36 H 0.129 0.871
37 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges 1.498 -5.728 -24.046 24.764
hybrid contribution -0.080 0.145 2.948 2.953
sum 1.418 -5.583 -21.098 21.870
Atomic orbital electron populations
1.22111 0.98392 0.99185 1.01041 1.18733 0.90956 0.93787 0.78703
0.93207 1.21145 1.32748 1.13488 0.90181 0.92049 1.24885 0.94728
0.94955 0.99085 1.69890 1.35524 1.22356 1.24172 0.86466 0.79156
0.79553 0.81676 1.20143 1.21054 1.20116 1.45911 1.68086 1.13408
1.09056 1.16205 0.78788 0.85526 0.80444 1.90907 1.56713 1.14032
1.83772 1.42999 1.67973 1.16582 1.06612 1.17411 0.91682 0.91155
0.84913 1.21028 1.07231 1.01149 0.91376 1.20398 0.92521 0.91010
0.97836 1.27644 1.18447 1.04163 1.12766 1.69278 0.82731 0.99019
0.95482 1.27786 1.20590 1.10253 1.07120 1.93169 1.51152 1.58404
1.81716 1.17299 0.94967 0.78111 0.93532 1.91609 1.89794 1.31362
1.97146 1.21447 1.04991 0.95323 0.98321 0.96609 0.95410 0.88954
0.92377 0.77975 0.75591 0.84562 0.83507 0.89906 0.87764 0.87071
0.82442
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16
2 C 0.28 6.98 2.56 -69.08 -0.18 6.80 16
3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16
4 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16
5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16
6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16
7 N -0.88 -24.61 11.31 55.43 0.63 -23.99 16
8 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16
9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16
11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16
12 N -0.71 -14.22 5.07 -59.81 -0.30 -14.53 16
13 C 0.69 13.49 8.37 -86.92 -0.73 12.76 16
14 O -0.58 -13.78 13.44 5.29 0.07 -13.71 16
15 N -0.69 -9.85 5.34 -14.23 -0.08 -9.93 16
16 C 0.25 3.48 6.30 -83.70 -0.53 2.95 16
17 C -0.19 -1.81 9.97 -39.38 -0.39 -2.20 16
18 C 0.00 0.02 9.74 -39.62 -0.39 -0.37 16
19 C -0.53 -6.02 5.60 -39.48 -0.22 -6.24 16
20 S 1.34 11.24 14.09 -107.50 -1.52 9.72 16
21 C -0.50 -3.91 10.70 101.05 1.08 -2.83 16
22 O -0.85 -13.41 15.98 -35.23 -0.56 -13.97 16
23 C 0.18 2.93 7.16 -39.44 -0.28 2.65 16
24 F -0.12 -2.28 15.30 2.25 0.03 -2.24 16
25 C -0.18 -3.03 8.67 -39.33 -0.34 -3.37 16
26 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16
27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16
28 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16
29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16
30 H 0.39 6.42 8.56 -40.82 -0.35 6.07 16
31 H 0.41 4.12 8.84 -40.82 -0.36 3.76 16
32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16
33 H 0.15 0.37 8.06 -52.48 -0.42 -0.06 16
34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16
36 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16
37 H 0.16 3.15 6.22 -52.49 -0.33 2.82 16
LS Contribution 333.88 15.07 5.03 5.03
Total: -1.00 -38.32 333.88 -7.98 -46.30
By element:
Atomic # 1 Polarization: 11.94 SS G_CDS: -4.24 Total: 7.70 kcal
Atomic # 6 Polarization: -3.65 SS G_CDS: -2.02 Total: -5.68 kcal
Atomic # 7 Polarization: -48.69 SS G_CDS: 0.25 Total: -48.44 kcal
Atomic # 8 Polarization: -27.19 SS G_CDS: -0.49 Total: -27.68 kcal
Atomic # 9 Polarization: -2.28 SS G_CDS: 0.03 Total: -2.24 kcal
Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal
Atomic # 16 Polarization: 11.24 SS G_CDS: -1.52 Total: 9.72 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -38.32 -7.98 -46.30 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000161138542.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.250 kcal
(2) G-P(sol) polarization free energy of solvation -38.315 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.566 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.300 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.550 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds