Wall clock time and date at job start Tue Mar 31 2020 10:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47277 * 2 1 4 4 C 1.50704 * 109.47447 * 119.99859 * 2 1 3 5 5 H 1.07999 * 120.00012 * 119.99789 * 4 2 1 6 6 C 1.37869 * 119.99921 * 300.27842 * 4 2 1 7 7 N 1.31521 * 120.00040 * 359.71748 * 6 4 2 8 8 Si 1.86800 * 120.00257 * 179.72517 * 6 4 2 9 9 H 1.48498 * 109.47049 * 59.99529 * 8 6 4 10 10 H 1.48497 * 109.47712 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46841 * 300.00066 * 8 6 4 12 12 N 1.46497 * 109.47201 * 239.99946 * 2 1 3 13 13 C 1.34779 * 120.00221 * 84.99855 * 12 2 1 14 14 O 1.21589 * 119.99460 * 359.97438 * 13 12 2 15 15 N 1.34767 * 120.00292 * 180.02562 * 13 12 2 16 16 C 1.39940 * 120.00287 * 175.38079 * 15 13 12 17 17 C 1.38909 * 120.05822 * 214.81683 * 16 15 13 18 18 C 1.38107 * 119.97559 * 179.69649 * 17 16 15 19 19 C 1.38261 * 120.09806 * 0.59424 * 18 17 16 20 20 S 1.76196 * 119.94408 * 179.69566 * 19 18 17 21 21 C 1.81407 * 102.99488 * 94.98326 * 20 19 18 22 22 O 1.42093 * 103.00399 * 208.83255 * 20 19 18 23 23 C 1.38486 * 120.11305 * 359.68315 * 19 18 17 24 24 F 1.35102 * 119.99356 * 179.97438 * 23 19 18 25 25 C 1.38361 * 120.02246 * 0.02562 * 23 19 18 26 26 H 1.08994 * 109.47544 * 60.00375 * 1 2 3 27 27 H 1.09005 * 109.46820 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46778 * 299.99626 * 1 2 3 29 29 H 0.96997 * 119.99983 * 179.97438 * 7 6 4 30 30 H 0.97004 * 120.00355 * 265.00067 * 12 2 1 31 31 H 0.97002 * 120.00223 * 355.37061 * 15 13 12 32 32 H 1.07994 * 120.00920 * 359.97438 * 17 16 15 33 33 H 1.08005 * 119.94550 * 180.27539 * 18 17 16 34 34 H 1.08992 * 109.47196 * 60.00080 * 21 20 19 35 35 H 1.08999 * 109.46739 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.46942 * 299.99633 * 21 20 19 37 37 H 1.07995 * 120.04851 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6947 -0.2427 2.4827 7 7 0.9386 0.8267 2.6034 8 14 2.3110 -1.1276 4.0079 9 1 3.7960 -1.1283 4.0136 10 1 1.8122 -0.4305 5.2204 11 1 1.8155 -2.5276 4.0021 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3572 14 8 1.8574 1.1613 -2.4118 15 7 2.5958 -0.6537 -3.4577 16 6 2.6381 0.0175 -4.6849 17 6 2.3832 -0.6715 -5.8638 18 6 2.4193 -0.0061 -7.0735 19 6 2.7208 1.3427 -7.1142 20 16 2.7735 2.1858 -8.6604 21 6 1.1106 2.8986 -8.7932 22 8 3.7161 3.2231 -8.4270 23 6 2.9812 2.0321 -5.9417 24 9 3.2760 3.3498 -5.9843 25 6 2.9405 1.3716 -4.7266 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7006 1.1555 3.4843 30 1 2.2490 -1.6318 -1.1526 31 1 2.8897 -1.5763 -3.3991 32 1 2.1526 -1.7261 -5.8341 33 1 2.2166 -0.5413 -7.9895 34 1 0.9361 3.5724 -7.9545 35 1 1.0265 3.4525 -9.7282 36 1 0.3702 2.0989 -8.7772 37 1 3.1431 1.9089 -3.8120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161138542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:13 Heat of formation + Delta-G solvation = -78.549818 kcal Electronic energy + Delta-G solvation = -23334.341890 eV Core-core repulsion = 19539.363592 eV Total energy + Delta-G solvation = -3794.978298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.089 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.86115 -40.36922 -38.41045 -35.78978 -35.26498 -34.35625 -32.53910 -30.71621 -30.07210 -28.98800 -28.33640 -25.33360 -23.65066 -22.83420 -21.36861 -20.02803 -18.54252 -18.31469 -17.94486 -16.46515 -16.45580 -16.08127 -15.69104 -15.61678 -14.97594 -14.79237 -14.70901 -14.28463 -13.98515 -13.92255 -13.63240 -13.26368 -12.96734 -12.68798 -12.49974 -12.48146 -11.92428 -11.83179 -11.74135 -11.17622 -11.05803 -10.86293 -10.50932 -10.38181 -10.31601 -10.29924 -9.60989 -9.14791 -8.85089 -8.71114 -8.63557 -8.38423 -7.98343 -6.19377 -4.29551 0.69127 1.15512 1.69938 2.48827 2.89554 3.20918 3.26889 3.27827 3.28805 3.71049 3.79156 4.21178 4.28791 4.61930 4.79845 4.92192 4.99372 5.08292 5.13217 5.24664 5.43770 5.72102 5.78311 5.80655 5.96319 6.18063 6.44216 6.68751 6.87342 6.91926 6.97532 7.09223 7.31753 7.53085 7.71042 7.87229 8.06529 8.58725 8.72029 9.05066 9.38270 10.86616 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.034094 B = 0.002636 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.060917 B =10619.415564 C =10852.284541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.714 5.714 13 C 0.690 3.310 14 O -0.577 6.577 15 N -0.694 5.694 16 C 0.247 3.753 17 C -0.186 4.186 18 C 0.002 3.998 19 C -0.532 4.532 20 S 1.339 4.661 21 C -0.501 4.501 22 O -0.849 6.849 23 C 0.182 3.818 24 F -0.121 7.121 25 C -0.178 4.178 26 H 0.015 0.985 27 H 0.027 0.973 28 H 0.092 0.908 29 H 0.266 0.734 30 H 0.388 0.612 31 H 0.408 0.592 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.144 -7.073 -23.724 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.365 5.365 13 C 0.390 3.610 14 O -0.454 6.454 15 N -0.342 5.342 16 C 0.148 3.852 17 C -0.208 4.208 18 C -0.018 4.018 19 C -0.630 4.630 20 S 1.535 4.465 21 C -0.657 4.657 22 O -0.844 6.844 23 C 0.161 3.839 24 F -0.099 7.099 25 C -0.201 4.201 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.220 0.780 31 H 0.244 0.756 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.498 -5.728 -24.046 24.764 hybrid contribution -0.080 0.145 2.948 2.953 sum 1.418 -5.583 -21.098 21.870 Atomic orbital electron populations 1.22111 0.98392 0.99185 1.01041 1.18733 0.90956 0.93787 0.78703 0.93207 1.21145 1.32748 1.13488 0.90181 0.92049 1.24885 0.94728 0.94955 0.99085 1.69890 1.35524 1.22356 1.24172 0.86466 0.79156 0.79553 0.81676 1.20143 1.21054 1.20116 1.45911 1.68086 1.13408 1.09056 1.16205 0.78788 0.85526 0.80444 1.90907 1.56713 1.14032 1.83772 1.42999 1.67973 1.16582 1.06612 1.17411 0.91682 0.91155 0.84913 1.21028 1.07231 1.01149 0.91376 1.20398 0.92521 0.91010 0.97836 1.27644 1.18447 1.04163 1.12766 1.69278 0.82731 0.99019 0.95482 1.27786 1.20590 1.10253 1.07120 1.93169 1.51152 1.58404 1.81716 1.17299 0.94967 0.78111 0.93532 1.91609 1.89794 1.31362 1.97146 1.21447 1.04991 0.95323 0.98321 0.96609 0.95410 0.88954 0.92377 0.77975 0.75591 0.84562 0.83507 0.89906 0.87764 0.87071 0.82442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 2 C 0.28 6.98 2.56 -69.08 -0.18 6.80 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.61 11.31 55.43 0.63 -23.99 16 8 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.71 -14.22 5.07 -59.81 -0.30 -14.53 16 13 C 0.69 13.49 8.37 -86.92 -0.73 12.76 16 14 O -0.58 -13.78 13.44 5.29 0.07 -13.71 16 15 N -0.69 -9.85 5.34 -14.23 -0.08 -9.93 16 16 C 0.25 3.48 6.30 -83.70 -0.53 2.95 16 17 C -0.19 -1.81 9.97 -39.38 -0.39 -2.20 16 18 C 0.00 0.02 9.74 -39.62 -0.39 -0.37 16 19 C -0.53 -6.02 5.60 -39.48 -0.22 -6.24 16 20 S 1.34 11.24 14.09 -107.50 -1.52 9.72 16 21 C -0.50 -3.91 10.70 101.05 1.08 -2.83 16 22 O -0.85 -13.41 15.98 -35.23 -0.56 -13.97 16 23 C 0.18 2.93 7.16 -39.44 -0.28 2.65 16 24 F -0.12 -2.28 15.30 2.25 0.03 -2.24 16 25 C -0.18 -3.03 8.67 -39.33 -0.34 -3.37 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 6.42 8.56 -40.82 -0.35 6.07 16 31 H 0.41 4.12 8.84 -40.82 -0.36 3.76 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.15 0.37 8.06 -52.48 -0.42 -0.06 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.16 3.15 6.22 -52.49 -0.33 2.82 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -38.32 333.88 -7.98 -46.30 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.24 Total: 7.70 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.02 Total: -5.68 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.25 Total: -48.44 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.49 Total: -27.68 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.03 Total: -2.24 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 11.24 SS G_CDS: -1.52 Total: 9.72 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -38.32 -7.98 -46.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161138542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.250 kcal (2) G-P(sol) polarization free energy of solvation -38.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds