Wall clock time and date at job start Tue Mar 31 2020 10:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47277 * 2 1 4 4 C 1.50704 * 109.47447 * 119.99859 * 2 1 3 5 5 H 1.07999 * 120.00012 * 119.99789 * 4 2 1 6 6 C 1.37869 * 119.99921 * 300.27842 * 4 2 1 7 7 N 1.31521 * 120.00040 * 359.71748 * 6 4 2 8 8 Si 1.86800 * 120.00257 * 179.72517 * 6 4 2 9 9 H 1.48498 * 109.47049 * 59.99529 * 8 6 4 10 10 H 1.48497 * 109.47712 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46841 * 300.00066 * 8 6 4 12 12 N 1.46497 * 109.47201 * 239.99946 * 2 1 3 13 13 C 1.34779 * 120.00221 * 84.99855 * 12 2 1 14 14 O 1.21589 * 119.99460 * 359.97438 * 13 12 2 15 15 N 1.34767 * 120.00292 * 180.02562 * 13 12 2 16 16 C 1.39940 * 120.00287 * 175.38079 * 15 13 12 17 17 C 1.38909 * 120.05822 * 214.81683 * 16 15 13 18 18 C 1.38107 * 119.97559 * 179.69649 * 17 16 15 19 19 C 1.38261 * 120.09806 * 0.59424 * 18 17 16 20 20 S 1.76196 * 119.94408 * 179.69566 * 19 18 17 21 21 C 1.81407 * 102.99488 * 94.98326 * 20 19 18 22 22 O 1.42093 * 103.00399 * 208.83255 * 20 19 18 23 23 C 1.38486 * 120.11305 * 359.68315 * 19 18 17 24 24 F 1.35102 * 119.99356 * 179.97438 * 23 19 18 25 25 C 1.38361 * 120.02246 * 0.02562 * 23 19 18 26 26 H 1.08994 * 109.47544 * 60.00375 * 1 2 3 27 27 H 1.09005 * 109.46820 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46778 * 299.99626 * 1 2 3 29 29 H 0.96997 * 119.99983 * 179.97438 * 7 6 4 30 30 H 0.97004 * 120.00355 * 265.00067 * 12 2 1 31 31 H 0.97002 * 120.00223 * 355.37061 * 15 13 12 32 32 H 1.07994 * 120.00920 * 359.97438 * 17 16 15 33 33 H 1.08005 * 119.94550 * 180.27539 * 18 17 16 34 34 H 1.08992 * 109.47196 * 60.00080 * 21 20 19 35 35 H 1.08999 * 109.46739 * 180.02562 * 21 20 19 36 36 H 1.08997 * 109.46942 * 299.99633 * 21 20 19 37 37 H 1.07995 * 120.04851 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6947 -0.2427 2.4827 7 7 0.9386 0.8267 2.6034 8 14 2.3110 -1.1276 4.0079 9 1 3.7960 -1.1283 4.0136 10 1 1.8122 -0.4305 5.2204 11 1 1.8155 -2.5276 4.0021 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3572 14 8 1.8574 1.1613 -2.4118 15 7 2.5958 -0.6537 -3.4577 16 6 2.6381 0.0175 -4.6849 17 6 2.3832 -0.6715 -5.8638 18 6 2.4193 -0.0061 -7.0735 19 6 2.7208 1.3427 -7.1142 20 16 2.7735 2.1858 -8.6604 21 6 1.1106 2.8986 -8.7932 22 8 3.7161 3.2231 -8.4270 23 6 2.9812 2.0321 -5.9417 24 9 3.2760 3.3498 -5.9843 25 6 2.9405 1.3716 -4.7266 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7006 1.1555 3.4843 30 1 2.2490 -1.6318 -1.1526 31 1 2.8897 -1.5763 -3.3991 32 1 2.1526 -1.7261 -5.8341 33 1 2.2166 -0.5413 -7.9895 34 1 0.9361 3.5724 -7.9545 35 1 1.0265 3.4525 -9.7282 36 1 0.3702 2.0989 -8.7772 37 1 3.1431 1.9089 -3.8120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161138542.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:12 Heat of formation + Delta-G solvation = -109.745005 kcal Electronic energy + Delta-G solvation = -23335.694615 eV Core-core repulsion = 19539.363592 eV Total energy + Delta-G solvation = -3796.331023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.14952 -41.72965 -39.64040 -36.97989 -36.83757 -35.80427 -34.41027 -31.79502 -31.42592 -30.04020 -29.50134 -27.38390 -24.85738 -23.92315 -22.92078 -21.72384 -20.04538 -19.44313 -18.95599 -18.07636 -17.55206 -17.28482 -17.11365 -16.91828 -16.56555 -16.28233 -15.86948 -15.59725 -15.23912 -15.03588 -14.72896 -14.46199 -14.33354 -14.01775 -13.77134 -13.52984 -13.46682 -13.03598 -12.92757 -12.83326 -12.76812 -12.66187 -12.30744 -12.18526 -11.67565 -11.40870 -11.17139 -11.16953 -10.64382 -10.01249 -9.87736 -9.60618 -9.24371 -8.21405 -6.39695 -0.28668 0.17388 0.93526 1.42920 1.45766 1.53040 1.60483 1.72429 2.00623 2.38735 2.52994 2.95951 3.09111 3.12564 3.42270 3.78824 4.08596 4.22143 4.31883 4.46314 4.54968 4.67598 4.73476 4.86717 4.95189 5.03603 5.04345 5.15041 5.18447 5.32894 5.36016 5.53074 5.58690 5.77428 5.87306 6.03652 6.15281 6.67804 7.11991 7.29069 7.55075 8.85011 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.034094 B = 0.002636 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.060917 B =10619.415564 C =10852.284541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.078 0.922 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.260 1.260 12 N -0.708 5.708 13 C 0.689 3.311 14 O -0.628 6.628 15 N -0.671 5.671 16 C 0.221 3.779 17 C -0.160 4.160 18 C 0.028 3.972 19 C -0.531 4.531 20 S 1.427 4.573 21 C -0.503 4.503 22 O -0.925 6.925 23 C 0.136 3.864 24 F -0.153 7.153 25 C -0.213 4.213 26 H 0.008 0.992 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.266 0.734 30 H 0.408 0.592 31 H 0.431 0.569 32 H 0.187 0.813 33 H 0.225 0.775 34 H 0.045 0.955 35 H 0.125 0.875 36 H 0.148 0.852 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 -11.540 -26.602 29.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.184 3.816 3 H 0.012 0.988 4 C -0.586 4.586 5 H 0.096 0.904 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.184 1.184 12 N -0.360 5.360 13 C 0.389 3.611 14 O -0.509 6.509 15 N -0.321 5.321 16 C 0.123 3.877 17 C -0.182 4.182 18 C 0.009 3.991 19 C -0.627 4.627 20 S 1.622 4.378 21 C -0.661 4.661 22 O -0.921 6.921 23 C 0.115 3.885 24 F -0.131 7.131 25 C -0.236 4.236 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.243 0.757 31 H 0.271 0.729 32 H 0.204 0.796 33 H 0.241 0.759 34 H 0.065 0.935 35 H 0.143 0.857 36 H 0.167 0.833 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.014 -10.277 -26.967 28.877 hybrid contribution 0.033 1.555 3.654 3.971 sum 1.046 -8.722 -23.313 24.914 Atomic orbital electron populations 1.21917 0.98190 0.99710 0.99466 1.18275 0.91065 0.91528 0.80726 0.98756 1.21502 1.32767 1.13849 0.90488 0.90399 1.25839 0.94792 0.95586 1.02465 1.70058 1.36865 1.24001 1.24790 0.85341 0.78539 0.78818 0.77300 1.19690 1.21347 1.18418 1.45429 1.68382 1.14110 1.08088 1.16343 0.78488 0.84872 0.81357 1.90897 1.58670 1.16562 1.84742 1.42537 1.67024 1.17210 1.05291 1.17745 0.93477 0.90294 0.86134 1.21647 1.03782 1.03142 0.89601 1.21379 0.88368 0.89240 1.00127 1.28202 1.16710 1.05915 1.11872 1.68255 0.81116 0.96427 0.91953 1.27835 1.20494 1.11088 1.06672 1.93035 1.55424 1.61179 1.82497 1.17789 0.98086 0.77422 0.95178 1.91519 1.90608 1.33677 1.97336 1.21229 1.08147 0.97178 0.97062 0.97244 0.93573 0.91427 0.92491 0.75661 0.72853 0.79572 0.75859 0.93518 0.85651 0.83329 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 9.26 71.98 0.67 -6.13 16 2 C 0.29 14.92 2.56 44.25 0.11 15.03 16 3 H -0.01 -0.34 7.58 -2.39 -0.02 -0.36 16 4 C -0.55 -28.58 8.73 25.60 0.22 -28.36 16 5 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -52.97 11.31 21.45 0.24 -52.73 16 8 Si 0.98 41.54 29.54 68.60 2.03 43.56 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 12 N -0.71 -28.58 5.07 -461.41 -2.34 -30.92 16 13 C 0.69 27.88 8.37 179.06 1.50 29.38 16 14 O -0.63 -32.45 13.44 -4.00 -0.05 -32.51 16 15 N -0.67 -18.49 5.34 -317.20 -1.69 -20.18 16 16 C 0.22 6.02 6.30 38.14 0.24 6.26 16 17 C -0.16 -2.30 9.97 22.40 0.22 -2.08 16 18 C 0.03 0.28 9.74 22.24 0.22 0.50 16 19 C -0.53 -10.83 5.60 22.33 0.12 -10.71 16 20 S 1.43 20.55 14.09 -56.49 -0.80 19.75 16 21 C -0.50 -6.49 10.70 113.37 1.21 -5.27 16 22 O -0.93 -29.62 15.98 -148.98 -2.38 -32.00 16 23 C 0.14 4.62 7.16 22.36 0.16 4.78 16 24 F -0.15 -6.38 15.30 44.97 0.69 -5.69 16 25 C -0.21 -7.83 8.67 22.44 0.19 -7.64 16 26 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.05 2.10 8.14 -2.38 -0.02 2.09 16 28 H 0.07 3.77 6.06 -2.39 -0.01 3.76 16 29 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.41 12.99 8.56 -92.71 -0.79 12.20 16 31 H 0.43 7.52 8.84 -92.71 -0.82 6.71 16 32 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.22 -1.09 8.06 -2.91 -0.02 -1.11 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.11 4.93 6.22 -2.91 -0.02 4.91 16 Total: -1.00 -96.23 333.88 0.53 -95.70 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.48 Total: 18.09 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.32 Total: -3.07 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -3.79 Total: -103.83 kcal Atomic # 8 Polarization: -62.08 SS G_CDS: -2.43 Total: -64.51 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.69 Total: -5.69 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 20.55 SS G_CDS: -0.80 Total: 19.75 kcal Total: -96.23 0.53 -95.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161138542.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.046 kcal (2) G-P(sol) polarization free energy of solvation -96.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds