Wall clock time and date at job start Tue Mar 31 2020 10:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47303 * 2 1 4 4 C 1.50696 * 109.47287 * 239.99229 * 2 1 3 5 5 H 1.08004 * 120.00331 * 239.99993 * 4 2 1 6 6 C 1.37874 * 119.99953 * 60.00461 * 4 2 1 7 7 N 1.31510 * 120.00322 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99956 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46978 * 60.00041 * 8 6 4 10 10 H 1.48507 * 109.47033 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47175 * 299.99954 * 8 6 4 12 12 N 1.46507 * 109.46784 * 119.99411 * 2 1 3 13 13 C 1.34781 * 119.99989 * 274.99704 * 12 2 1 14 14 O 1.21587 * 119.99913 * 0.02562 * 13 12 2 15 15 N 1.34774 * 119.99918 * 179.97438 * 13 12 2 16 16 C 1.39942 * 120.00235 * 185.31698 * 15 13 12 17 17 C 1.38906 * 120.04917 * 33.29191 * 16 15 13 18 18 C 1.38109 * 119.97675 * 179.70108 * 17 16 15 19 19 C 1.38268 * 120.09209 * 0.27454 * 18 17 16 20 20 S 1.76196 * 119.93954 * 180.02562 * 19 18 17 21 21 C 1.81398 * 102.99997 * 95.00436 * 20 19 18 22 22 O 1.42108 * 103.00109 * 208.85771 * 20 19 18 23 23 C 1.38480 * 120.11388 * 0.02562 * 19 18 17 24 24 F 1.35105 * 119.99167 * 179.97438 * 23 19 18 25 25 C 1.38359 * 120.02451 * 359.97438 * 23 19 18 26 26 H 1.08997 * 109.47166 * 300.00900 * 1 2 3 27 27 H 1.09007 * 109.46497 * 60.00456 * 1 2 3 28 28 H 1.09003 * 109.47303 * 180.02562 * 1 2 3 29 29 H 0.96996 * 120.00840 * 180.02562 * 7 6 4 30 30 H 0.97004 * 119.99872 * 95.00421 * 12 2 1 31 31 H 0.97005 * 119.99763 * 5.32208 * 15 13 12 32 32 H 1.07997 * 120.01170 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.95501 * 180.30099 * 18 17 16 34 34 H 1.08997 * 109.47501 * 60.00044 * 21 20 19 35 35 H 1.09007 * 109.46987 * 179.97438 * 21 20 19 36 36 H 1.09001 * 109.47015 * 299.99931 * 21 20 19 37 37 H 1.07997 * 120.05239 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9429 0.8294 -2.6035 8 14 2.3227 -1.1200 -4.0077 9 1 1.8281 -2.5203 -4.0078 10 1 1.8271 -0.4204 -5.2204 11 1 3.8076 -1.1195 -4.0074 12 7 2.0182 -0.6905 1.1963 13 6 2.1470 -0.0180 2.3572 14 8 1.8574 1.1616 2.4118 15 7 2.5957 -0.6534 3.4579 16 6 2.6243 0.0133 4.6879 17 6 1.6517 0.9580 4.9899 18 6 1.6778 1.6106 6.2068 19 6 2.6742 1.3291 7.1232 20 16 2.7033 2.1636 8.6747 21 6 1.8348 1.0114 9.7741 22 8 4.0859 2.1803 9.0029 23 6 3.6493 0.3925 6.8236 24 9 4.6221 0.1198 7.7206 25 6 3.6277 -0.2641 5.6059 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 0.7083 1.1605 -3.4845 30 1 2.2490 -1.6317 1.1528 31 1 2.8988 -1.5729 3.3974 32 1 0.8729 1.1789 4.2751 33 1 0.9187 2.3415 6.4431 34 1 2.3683 0.0612 9.7994 35 1 1.7922 1.4306 10.7794 36 1 0.8222 0.8497 9.4042 37 1 4.3877 -0.9949 5.3720 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161138651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:15 Heat of formation + Delta-G solvation = -79.098416 kcal Electronic energy + Delta-G solvation = -23202.756686 eV Core-core repulsion = 19407.754599 eV Total energy + Delta-G solvation = -3795.002087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.01430 -40.38663 -38.39901 -35.81079 -35.26053 -34.39255 -32.52785 -30.81598 -30.01252 -29.02803 -28.33841 -25.34302 -23.45268 -23.18079 -21.28662 -20.02379 -18.51696 -18.39131 -17.94635 -16.61793 -16.39830 -16.08981 -15.84659 -15.60027 -14.98057 -14.76202 -14.72024 -14.30791 -14.18170 -13.95151 -13.48122 -13.34412 -13.08656 -12.73466 -12.54152 -12.46429 -11.91338 -11.84903 -11.69020 -11.18864 -11.05931 -10.87212 -10.52528 -10.40617 -10.35279 -10.30504 -9.62738 -9.16088 -8.94427 -8.72416 -8.64338 -8.33636 -7.98847 -6.20396 -4.30219 0.68496 1.11852 1.67391 2.47317 2.86489 3.20598 3.26321 3.26659 3.28589 3.71084 3.79383 4.18582 4.26637 4.58387 4.75942 4.93745 4.99389 5.06681 5.12467 5.16713 5.38268 5.62415 5.71663 5.81810 6.04577 6.17405 6.42454 6.67544 6.85554 6.89323 6.96060 7.08196 7.29904 7.52357 7.69939 7.86094 8.05446 8.57516 8.71009 9.03438 9.37593 10.85616 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.038132 B = 0.002523 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.112341 B =11094.336519 C =11447.617830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.714 5.714 13 C 0.692 3.308 14 O -0.575 6.575 15 N -0.695 5.695 16 C 0.251 3.749 17 C -0.151 4.151 18 C 0.004 3.996 19 C -0.531 4.531 20 S 1.342 4.658 21 C -0.501 4.501 22 O -0.850 6.850 23 C 0.182 3.818 24 F -0.124 7.124 25 C -0.213 4.213 26 H 0.016 0.984 27 H 0.092 0.908 28 H 0.026 0.974 29 H 0.266 0.734 30 H 0.388 0.612 31 H 0.406 0.594 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 -0.421 20.126 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.069 0.931 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.365 5.365 13 C 0.392 3.608 14 O -0.452 6.452 15 N -0.342 5.342 16 C 0.153 3.847 17 C -0.173 4.173 18 C -0.016 4.016 19 C -0.629 4.629 20 S 1.537 4.463 21 C -0.658 4.658 22 O -0.845 6.845 23 C 0.161 3.839 24 F -0.102 7.102 25 C -0.236 4.236 26 H 0.035 0.965 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.220 0.780 31 H 0.242 0.758 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.313 1.616 20.090 20.287 hybrid contribution 1.800 -3.724 -0.923 4.238 sum -0.513 -2.108 19.167 19.289 Atomic orbital electron populations 1.22109 0.98322 0.99195 1.01048 1.18737 0.90964 0.93795 0.78665 0.93129 1.21149 1.32818 1.13410 0.90226 0.92109 1.24869 0.94734 0.94936 0.99048 1.69875 1.35570 1.22311 1.24173 0.86481 0.79187 0.79557 0.81709 1.20144 1.21037 1.20160 1.45937 1.67956 1.13365 1.09257 1.16154 0.78876 0.85424 0.80316 1.90908 1.56391 1.13861 1.84041 1.43061 1.68306 1.16603 1.06233 1.17394 0.91435 0.92023 0.83894 1.21476 0.99737 0.98413 0.97658 1.20593 0.94542 0.95555 0.90943 1.27634 1.03718 1.12488 1.19040 1.69491 0.94628 1.00601 0.81537 1.27800 1.11182 1.14007 1.12774 1.93154 1.29943 1.80502 1.80942 1.17074 0.85803 0.94094 0.86975 1.91600 1.60304 1.92243 1.66046 1.20793 1.01038 1.06935 0.94875 0.96533 0.88951 0.95436 0.92373 0.77998 0.75808 0.83025 0.83402 0.90158 0.87774 0.87028 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16 2 C 0.28 6.78 2.56 -69.08 -0.18 6.61 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.54 -13.71 8.73 -34.44 -0.30 -14.01 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.08 11.32 55.43 0.63 -23.45 16 8 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 12 N -0.71 -13.89 5.07 -59.81 -0.30 -14.19 16 13 C 0.69 13.00 8.27 -86.92 -0.72 12.28 16 14 O -0.58 -12.82 13.69 5.29 0.07 -12.75 16 15 N -0.70 -9.86 5.35 -14.23 -0.08 -9.94 16 16 C 0.25 3.54 6.28 -83.70 -0.53 3.01 16 17 C -0.15 -2.04 8.65 -39.38 -0.34 -2.38 16 18 C 0.00 0.04 9.74 -39.62 -0.39 -0.35 16 19 C -0.53 -5.99 5.60 -39.48 -0.22 -6.21 16 20 S 1.34 11.26 14.09 -107.50 -1.51 9.75 16 21 C -0.50 -3.47 10.70 101.05 1.08 -2.39 16 22 O -0.85 -13.08 15.98 -35.23 -0.56 -13.65 16 23 C 0.18 2.55 7.16 -39.45 -0.28 2.27 16 24 F -0.12 -1.98 15.30 2.25 0.03 -1.95 16 25 C -0.21 -2.83 9.94 -39.33 -0.39 -3.23 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 2.38 6.07 -51.92 -0.32 2.07 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.39 6.36 8.56 -40.82 -0.35 6.01 16 31 H 0.41 4.35 8.84 -40.82 -0.36 3.99 16 32 H 0.15 2.28 6.41 -52.49 -0.34 1.94 16 33 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.11 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -36.35 334.18 -7.98 -44.32 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -4.26 Total: 7.63 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -2.01 Total: -5.87 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.25 Total: -47.58 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.49 Total: -26.40 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.03 Total: -1.95 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 11.26 SS G_CDS: -1.51 Total: 9.75 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.35 -7.98 -44.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161138651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.774 kcal (2) G-P(sol) polarization free energy of solvation -36.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds