Wall clock time and date at job start Tue Mar 31 2020 10:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47303 * 2 1 4 4 C 1.50696 * 109.47287 * 239.99229 * 2 1 3 5 5 H 1.08004 * 120.00331 * 239.99993 * 4 2 1 6 6 C 1.37874 * 119.99953 * 60.00461 * 4 2 1 7 7 N 1.31510 * 120.00322 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99956 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46978 * 60.00041 * 8 6 4 10 10 H 1.48507 * 109.47033 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47175 * 299.99954 * 8 6 4 12 12 N 1.46507 * 109.46784 * 119.99411 * 2 1 3 13 13 C 1.34781 * 119.99989 * 274.99704 * 12 2 1 14 14 O 1.21587 * 119.99913 * 0.02562 * 13 12 2 15 15 N 1.34774 * 119.99918 * 179.97438 * 13 12 2 16 16 C 1.39942 * 120.00235 * 185.31698 * 15 13 12 17 17 C 1.38906 * 120.04917 * 33.29191 * 16 15 13 18 18 C 1.38109 * 119.97675 * 179.70108 * 17 16 15 19 19 C 1.38268 * 120.09209 * 0.27454 * 18 17 16 20 20 S 1.76196 * 119.93954 * 180.02562 * 19 18 17 21 21 C 1.81398 * 102.99997 * 95.00436 * 20 19 18 22 22 O 1.42108 * 103.00109 * 208.85771 * 20 19 18 23 23 C 1.38480 * 120.11388 * 0.02562 * 19 18 17 24 24 F 1.35105 * 119.99167 * 179.97438 * 23 19 18 25 25 C 1.38359 * 120.02451 * 359.97438 * 23 19 18 26 26 H 1.08997 * 109.47166 * 300.00900 * 1 2 3 27 27 H 1.09007 * 109.46497 * 60.00456 * 1 2 3 28 28 H 1.09003 * 109.47303 * 180.02562 * 1 2 3 29 29 H 0.96996 * 120.00840 * 180.02562 * 7 6 4 30 30 H 0.97004 * 119.99872 * 95.00421 * 12 2 1 31 31 H 0.97005 * 119.99763 * 5.32208 * 15 13 12 32 32 H 1.07997 * 120.01170 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.95501 * 180.30099 * 18 17 16 34 34 H 1.08997 * 109.47501 * 60.00044 * 21 20 19 35 35 H 1.09007 * 109.46987 * 179.97438 * 21 20 19 36 36 H 1.09001 * 109.47015 * 299.99931 * 21 20 19 37 37 H 1.07997 * 120.05239 * 180.02562 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9429 0.8294 -2.6035 8 14 2.3227 -1.1200 -4.0077 9 1 1.8281 -2.5203 -4.0078 10 1 1.8271 -0.4204 -5.2204 11 1 3.8076 -1.1195 -4.0074 12 7 2.0182 -0.6905 1.1963 13 6 2.1470 -0.0180 2.3572 14 8 1.8574 1.1616 2.4118 15 7 2.5957 -0.6534 3.4579 16 6 2.6243 0.0133 4.6879 17 6 1.6517 0.9580 4.9899 18 6 1.6778 1.6106 6.2068 19 6 2.6742 1.3291 7.1232 20 16 2.7033 2.1636 8.6747 21 6 1.8348 1.0114 9.7741 22 8 4.0859 2.1803 9.0029 23 6 3.6493 0.3925 6.8236 24 9 4.6221 0.1198 7.7206 25 6 3.6277 -0.2641 5.6059 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 0.7083 1.1605 -3.4845 30 1 2.2490 -1.6317 1.1528 31 1 2.8988 -1.5729 3.3974 32 1 0.8729 1.1789 4.2751 33 1 0.9187 2.3415 6.4431 34 1 2.3683 0.0612 9.7994 35 1 1.7922 1.4306 10.7794 36 1 0.8222 0.8497 9.4042 37 1 4.3877 -0.9949 5.3720 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161138651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:14 Heat of formation + Delta-G solvation = -106.604088 kcal Electronic energy + Delta-G solvation = -23203.949422 eV Core-core repulsion = 19407.754599 eV Total energy + Delta-G solvation = -3796.194822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.089 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.14877 -41.70542 -39.62793 -36.92269 -36.81197 -35.78158 -34.35342 -31.87799 -31.35632 -30.00587 -29.47456 -27.32681 -24.72322 -24.16990 -22.82573 -21.63581 -19.98980 -19.45023 -18.94545 -18.11073 -17.44725 -17.31594 -17.15632 -16.91016 -16.55436 -16.13353 -15.87277 -15.59610 -15.17154 -15.05808 -14.74392 -14.39529 -14.33977 -14.00879 -13.74260 -13.59195 -13.46760 -13.00159 -12.88055 -12.75496 -12.71880 -12.64575 -12.26063 -12.15706 -11.62280 -11.47758 -11.11944 -11.10218 -10.59827 -10.00961 -9.88010 -9.56599 -9.20817 -8.17902 -6.34908 -0.29234 0.11563 0.90769 1.44762 1.47021 1.52783 1.57492 1.75145 2.03919 2.41195 2.53562 2.95331 3.12537 3.15649 3.37816 3.70865 4.01200 4.20406 4.32983 4.36966 4.55518 4.63277 4.76320 4.92304 4.95526 5.04550 5.10055 5.12914 5.19788 5.33285 5.41261 5.57522 5.63284 5.81623 5.84522 6.09736 6.16246 6.71852 7.12045 7.32930 7.57302 8.88160 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.038132 B = 0.002523 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.112341 B =11094.336519 C =11447.617830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.073 0.927 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.970 3.030 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.711 5.711 13 C 0.695 3.305 14 O -0.613 6.613 15 N -0.678 5.678 16 C 0.228 3.772 17 C -0.167 4.167 18 C 0.022 3.978 19 C -0.529 4.529 20 S 1.409 4.591 21 C -0.497 4.497 22 O -0.919 6.919 23 C 0.150 3.850 24 F -0.141 7.141 25 C -0.210 4.210 26 H 0.018 0.982 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.266 0.734 30 H 0.404 0.596 31 H 0.423 0.577 32 H 0.136 0.864 33 H 0.202 0.798 34 H 0.057 0.943 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 -1.218 21.272 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.021 0.979 4 C -0.588 4.588 5 H 0.091 0.909 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.795 3.205 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.363 5.363 13 C 0.396 3.604 14 O -0.493 6.493 15 N -0.326 5.326 16 C 0.130 3.870 17 C -0.188 4.188 18 C 0.003 3.997 19 C -0.625 4.625 20 S 1.605 4.395 21 C -0.655 4.655 22 O -0.915 6.915 23 C 0.129 3.871 24 F -0.119 7.119 25 C -0.233 4.233 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.239 0.761 31 H 0.262 0.738 32 H 0.154 0.846 33 H 0.219 0.781 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.163 0.837 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.026 0.763 21.265 21.492 hybrid contribution 1.968 -3.439 -1.098 4.112 sum -1.057 -2.676 20.166 20.371 Atomic orbital electron populations 1.21918 0.97949 0.99552 0.99905 1.18293 0.91178 0.91701 0.80301 0.97939 1.21502 1.32814 1.13710 0.90777 0.90936 1.25734 0.94872 0.95571 1.02136 1.70022 1.36734 1.23741 1.24755 0.85429 0.78521 0.78761 0.77795 1.18897 1.21171 1.19858 1.45510 1.68344 1.14002 1.08468 1.16161 0.78508 0.84914 0.80857 1.90880 1.57947 1.15669 1.84790 1.42653 1.67524 1.17219 1.05196 1.17540 0.92463 0.93176 0.83809 1.21596 0.99472 0.98994 0.98787 1.21140 0.94763 0.94961 0.88861 1.28101 1.02721 1.11098 1.20581 1.68678 0.91639 0.99550 0.79642 1.27766 1.12177 1.12099 1.13471 1.93031 1.34135 1.82366 1.81970 1.17478 0.86644 0.95705 0.87289 1.91558 1.61194 1.92575 1.66591 1.20837 1.01000 1.06981 0.94487 0.96332 0.91369 0.94142 0.92447 0.76066 0.73809 0.84615 0.78057 0.92346 0.85746 0.83722 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 9.26 71.98 0.67 -5.75 16 2 C 0.29 14.23 2.56 44.24 0.11 14.35 16 3 H 0.00 0.16 7.58 -2.39 -0.02 0.14 16 4 C -0.55 -27.98 8.73 25.60 0.22 -27.75 16 5 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.91 -50.79 11.32 21.45 0.24 -50.54 16 8 Si 0.97 40.82 29.54 68.60 2.03 42.85 16 9 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 10 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 N -0.71 -27.56 5.07 -461.40 -2.34 -29.90 16 13 C 0.70 26.19 8.27 179.05 1.48 27.67 16 14 O -0.61 -27.92 13.69 -3.99 -0.05 -27.97 16 15 N -0.68 -18.83 5.35 -317.20 -1.70 -20.53 16 16 C 0.23 6.27 6.28 38.14 0.24 6.50 16 17 C -0.17 -4.32 8.65 22.40 0.19 -4.13 16 18 C 0.02 0.38 9.74 22.25 0.22 0.60 16 19 C -0.53 -10.93 5.60 22.33 0.12 -10.81 16 20 S 1.41 20.50 14.09 -56.49 -0.80 19.70 16 21 C -0.50 -5.25 10.70 113.37 1.21 -4.04 16 22 O -0.92 -27.76 15.98 -148.98 -2.38 -30.14 16 23 C 0.15 4.11 7.16 22.36 0.16 4.27 16 24 F -0.14 -4.54 15.30 44.97 0.69 -3.85 16 25 C -0.21 -5.47 9.94 22.43 0.22 -5.25 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 3.60 6.07 -2.38 -0.01 3.59 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.40 12.85 8.56 -92.71 -0.79 12.05 16 31 H 0.42 8.59 8.84 -92.70 -0.82 7.77 16 32 H 0.14 4.04 6.41 -2.91 -0.02 4.02 16 33 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -81.86 334.18 0.51 -81.35 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -0.48 Total: 22.02 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.30 Total: -2.98 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -3.79 Total: -100.97 kcal Atomic # 8 Polarization: -55.68 SS G_CDS: -2.44 Total: -58.12 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.69 Total: -3.85 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Atomic # 16 Polarization: 20.50 SS G_CDS: -0.80 Total: 19.70 kcal Total: -81.86 0.51 -81.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161138651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.256 kcal (2) G-P(sol) polarization free energy of solvation -81.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds