Wall clock time and date at job start Tue Mar 31 2020 10:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 6 6 C 1.33648 * 122.74502 * 75.00369 * 5 2 1 7 7 S 1.76196 * 107.92039 * 180.02562 * 6 5 2 8 8 C 1.70972 * 90.28429 * 0.02562 * 7 6 5 9 9 C 1.50703 * 124.91750 * 180.02562 * 8 7 6 10 10 N 1.46506 * 109.46851 * 269.97618 * 9 8 7 11 11 C 1.34771 * 119.99978 * 180.02562 * 10 9 8 12 12 O 1.21285 * 120.00079 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00241 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47247 * 179.97438 * 13 11 10 15 15 C 1.76200 * 99.99904 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00162 * 359.97438 * 15 14 13 17 17 C 1.38802 * 120.00123 * 179.97438 * 15 14 13 18 18 N 1.31630 * 119.99919 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99954 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47660 * 89.99603 * 19 17 15 21 21 H 1.48495 * 109.47289 * 209.99830 * 19 17 15 22 22 H 1.48506 * 109.46905 * 329.99635 * 19 17 15 23 23 N 1.29029 * 110.16899 * 359.73076 * 8 7 6 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 31 31 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 33 33 H 1.07999 * 126.03855 * 0.02562 * 6 5 2 34 34 H 1.09001 * 109.47165 * 29.97171 * 9 8 7 35 35 H 1.08994 * 109.47341 * 149.97454 * 9 8 7 36 36 H 0.96996 * 119.99691 * 359.97438 * 10 9 8 37 37 H 1.09001 * 109.46827 * 299.99749 * 13 11 10 38 38 H 1.08998 * 109.47375 * 59.99302 * 13 11 10 39 39 H 0.97000 * 119.99278 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.9992 -0.1595 -2.4476 7 16 2.6762 -1.3204 -3.5869 8 6 2.9360 -2.4314 -2.3136 9 6 3.5415 -3.8021 -2.4748 10 7 2.4795 -4.7777 -2.7335 11 6 2.7875 -6.0776 -2.9115 12 8 3.9438 -6.4397 -2.8580 13 6 1.6952 -7.0813 -3.1770 14 16 2.4223 -8.7274 -3.3707 15 6 0.9646 -9.6735 -3.6614 16 1 -0.0002 -9.1884 -3.6756 17 6 1.0562 -11.0424 -3.8720 18 7 -0.0329 -11.7493 -4.0886 19 14 2.7248 -11.8817 -3.8467 20 1 3.0353 -12.3247 -2.4638 21 1 2.7000 -13.0600 -4.7501 22 1 3.7658 -10.9275 -4.3063 23 7 2.5442 -1.9242 -1.1938 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 3.1300 -0.7217 1.2491 32 1 1.6766 -0.2074 2.1393 33 1 1.6236 0.8237 -2.6899 34 1 4.2398 -3.7947 -3.3117 35 1 4.0711 -4.0749 -1.5621 36 1 1.5548 -4.4881 -2.7759 37 1 0.9970 -7.0883 -2.3400 38 1 1.1653 -6.8087 -4.0898 39 1 0.0312 -12.7060 -4.2355 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171579458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:44 Heat of formation + Delta-G solvation = -7.178397 kcal Electronic energy + Delta-G solvation = -20553.491025 eV Core-core repulsion = 17327.820800 eV Total energy + Delta-G solvation = -3225.670225 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.68660 -39.28113 -36.71258 -34.66730 -32.43852 -31.07931 -29.55131 -27.98452 -27.64766 -26.66707 -25.60162 -24.16700 -21.11112 -20.60578 -19.51014 -18.09144 -17.52117 -16.53640 -16.37605 -15.79613 -15.40785 -15.09551 -14.94992 -14.41508 -14.26737 -14.04087 -13.68273 -13.61929 -13.21997 -12.90300 -12.78843 -12.65904 -12.52845 -12.38799 -12.01024 -11.93609 -11.33220 -11.28046 -11.26797 -11.11505 -11.00653 -10.63125 -9.97628 -9.88182 -9.79919 -9.61849 -9.12630 -9.06861 -8.99511 -8.50924 -6.92219 -6.28840 -4.00753 0.27903 1.00125 1.39516 2.34577 2.79517 2.90890 3.31255 3.34765 3.50665 3.56735 3.71233 4.29094 4.33276 4.44337 4.60539 4.70725 4.82315 4.83820 4.98695 5.10224 5.18120 5.20964 5.26938 5.35833 5.39889 5.51361 5.54213 5.57856 5.59860 5.69603 5.75233 5.89909 5.93171 6.00239 6.11027 6.33434 7.40439 7.49981 7.94241 8.39426 8.41980 9.17245 10.80381 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.026541 B = 0.002448 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.717348 B =11434.150245 C =11735.402530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.005 3.995 3 C -0.139 4.139 4 C -0.131 4.131 5 C 0.080 3.920 6 C -0.256 4.256 7 S 0.143 5.857 8 C 0.028 3.972 9 C 0.202 3.798 10 N -0.732 5.732 11 C 0.535 3.465 12 O -0.516 6.516 13 C -0.123 4.123 14 S -0.140 6.140 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.095 3.905 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 N -0.446 5.446 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.177 0.823 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.402 0.598 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 29.149 5.282 29.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.002 3.998 3 C -0.197 4.197 4 C -0.188 4.188 5 C -0.053 4.053 6 C -0.395 4.395 7 S 0.398 5.602 8 C -0.250 4.250 9 C 0.074 3.926 10 N -0.388 5.388 11 C 0.321 3.679 12 O -0.390 6.390 13 C -0.274 4.274 14 S 0.086 5.914 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.517 5.517 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 N -0.161 5.161 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.194 0.806 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.236 0.764 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.713 28.009 4.696 28.789 hybrid contribution -1.658 0.509 0.570 1.826 sum 3.055 28.519 5.266 29.162 Atomic orbital electron populations 1.21893 0.93093 1.02513 1.02085 1.19188 0.95606 0.94191 0.90849 1.21929 1.01401 0.94200 1.02181 1.21720 1.01292 1.00808 0.94996 1.20202 0.99734 0.90245 0.95114 1.26894 1.11195 1.05754 0.95692 1.84165 1.55145 1.07508 1.13348 1.26980 1.04618 1.01905 0.91464 1.19663 0.89492 0.79725 1.03679 1.45940 1.10138 1.07143 1.75555 1.20296 0.90388 0.81744 0.75457 1.90715 1.20720 1.78743 1.48819 1.23271 0.99948 0.98596 1.05556 1.84786 1.14696 0.97774 1.94104 1.22314 0.92730 0.95367 1.56494 0.89363 1.24718 0.97160 0.96252 0.93216 1.69941 1.27795 1.07562 1.46376 0.86730 0.84891 0.80819 0.79383 1.19197 1.19949 1.15891 1.66105 1.11577 1.11092 1.27329 0.92500 0.92168 0.91741 0.91692 0.92344 0.92437 0.91567 0.92507 0.92654 0.80610 0.89226 0.88437 0.76425 0.88338 0.88310 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.43 37.16 0.31 -0.62 16 2 C 0.00 0.03 0.90 -155.66 -0.14 -0.11 16 3 C -0.14 -0.81 8.13 37.16 0.30 -0.50 16 4 C -0.13 -1.08 7.91 37.16 0.29 -0.79 16 5 C 0.08 0.74 5.41 -84.23 -0.46 0.29 16 6 C -0.26 -2.01 10.40 29.12 0.30 -1.71 16 7 S 0.14 1.19 23.18 -107.50 -2.49 -1.30 16 8 C 0.03 0.30 6.75 -13.45 -0.09 0.20 16 9 C 0.20 2.34 6.25 -5.19 -0.03 2.31 16 10 N -0.73 -9.50 5.55 -61.47 -0.34 -9.84 16 11 C 0.54 9.36 7.85 -10.99 -0.09 9.27 16 12 O -0.52 -10.87 15.86 5.55 0.09 -10.78 16 13 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 14 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 15 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 16 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 17 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 18 N -0.88 -26.57 13.97 55.49 0.78 -25.79 16 19 Si 0.86 21.76 27.74 -169.99 -4.72 17.05 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.23 -5.94 6.74 56.52 0.38 -5.56 16 23 N -0.45 -4.99 9.55 -8.06 -0.08 -5.07 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.28 7.15 -51.93 -0.37 -0.09 16 30 H 0.07 0.65 7.97 -51.93 -0.41 0.24 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.18 0.96 7.31 -52.49 -0.38 0.58 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.40 4.40 8.46 -40.82 -0.35 4.05 16 37 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -33.49 355.89 -8.29 -41.78 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.74 Total: -0.11 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 0.84 Total: -5.78 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.36 Total: -40.70 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.05 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -4.49 Total: -6.82 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.49 -8.29 -41.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171579458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.603 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds