Wall clock time and date at job start Tue Mar 31 2020 10:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 6 6 C 1.33648 * 122.74502 * 75.00369 * 5 2 1 7 7 S 1.76196 * 107.92039 * 180.02562 * 6 5 2 8 8 C 1.70972 * 90.28429 * 0.02562 * 7 6 5 9 9 C 1.50703 * 124.91750 * 180.02562 * 8 7 6 10 10 N 1.46506 * 109.46851 * 269.97618 * 9 8 7 11 11 C 1.34771 * 119.99978 * 180.02562 * 10 9 8 12 12 O 1.21285 * 120.00079 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00241 * 179.97438 * 11 10 9 14 14 S 1.80997 * 109.47247 * 179.97438 * 13 11 10 15 15 C 1.76200 * 99.99904 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00162 * 359.97438 * 15 14 13 17 17 C 1.38802 * 120.00123 * 179.97438 * 15 14 13 18 18 N 1.31630 * 119.99919 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99954 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47660 * 89.99603 * 19 17 15 21 21 H 1.48495 * 109.47289 * 209.99830 * 19 17 15 22 22 H 1.48506 * 109.46905 * 329.99635 * 19 17 15 23 23 N 1.29029 * 110.16899 * 359.73076 * 8 7 6 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 31 31 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 33 33 H 1.07999 * 126.03855 * 0.02562 * 6 5 2 34 34 H 1.09001 * 109.47165 * 29.97171 * 9 8 7 35 35 H 1.08994 * 109.47341 * 149.97454 * 9 8 7 36 36 H 0.96996 * 119.99691 * 359.97438 * 10 9 8 37 37 H 1.09001 * 109.46827 * 299.99749 * 13 11 10 38 38 H 1.08998 * 109.47375 * 59.99302 * 13 11 10 39 39 H 0.97000 * 119.99278 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.9992 -0.1595 -2.4476 7 16 2.6762 -1.3204 -3.5869 8 6 2.9360 -2.4314 -2.3136 9 6 3.5415 -3.8021 -2.4748 10 7 2.4795 -4.7777 -2.7335 11 6 2.7875 -6.0776 -2.9115 12 8 3.9438 -6.4397 -2.8580 13 6 1.6952 -7.0813 -3.1770 14 16 2.4223 -8.7274 -3.3707 15 6 0.9646 -9.6735 -3.6614 16 1 -0.0002 -9.1884 -3.6756 17 6 1.0562 -11.0424 -3.8720 18 7 -0.0329 -11.7493 -4.0886 19 14 2.7248 -11.8817 -3.8467 20 1 3.0353 -12.3247 -2.4638 21 1 2.7000 -13.0600 -4.7501 22 1 3.7658 -10.9275 -4.3063 23 7 2.5442 -1.9242 -1.1938 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 -1.7489 1.2493 31 1 3.1300 -0.7217 1.2491 32 1 1.6766 -0.2074 2.1393 33 1 1.6236 0.8237 -2.6899 34 1 4.2398 -3.7947 -3.3117 35 1 4.0711 -4.0749 -1.5621 36 1 1.5548 -4.4881 -2.7759 37 1 0.9970 -7.0883 -2.3400 38 1 1.1653 -6.8087 -4.0898 39 1 0.0312 -12.7060 -4.2355 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171579458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:44 Heat of formation + Delta-G solvation = -29.728905 kcal Electronic energy + Delta-G solvation = -20554.468889 eV Core-core repulsion = 17327.820800 eV Total energy + Delta-G solvation = -3226.648088 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41403 -40.61820 -37.40864 -35.80341 -34.66987 -32.18291 -30.63695 -28.81927 -28.13783 -27.87146 -27.39455 -24.93037 -21.96121 -21.84263 -20.20296 -19.92164 -18.44897 -17.91155 -17.46878 -17.07703 -16.73532 -16.50523 -15.97629 -15.55442 -15.28296 -14.99453 -14.88265 -14.70447 -14.55241 -14.31941 -13.85381 -13.36480 -13.32299 -13.20589 -13.07964 -13.00293 -12.93299 -12.66635 -12.55735 -11.90882 -11.86293 -11.85246 -11.68797 -11.18806 -11.16889 -10.67334 -10.54596 -10.44218 -10.29633 -9.77514 -8.99686 -8.51333 -6.22247 -0.43689 0.31700 0.71436 0.97539 1.32334 1.45256 1.49230 1.52686 1.70422 2.24103 2.28750 2.71010 2.86930 2.87280 3.59628 3.80389 3.88555 4.06142 4.12181 4.21504 4.28457 4.34027 4.45638 4.50418 4.52354 4.77459 4.80464 4.88870 4.93508 5.02190 5.03468 5.16436 5.17428 5.34054 5.41013 5.46048 5.70955 6.11841 6.29774 6.72479 6.93692 7.06043 8.61076 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.026541 B = 0.002448 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.717348 B =11434.150245 C =11735.402530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.003 3.997 3 C -0.136 4.136 4 C -0.128 4.128 5 C 0.059 3.941 6 C -0.244 4.244 7 S 0.180 5.820 8 C 0.004 3.996 9 C 0.205 3.795 10 N -0.709 5.709 11 C 0.542 3.458 12 O -0.555 6.555 13 C -0.111 4.111 14 S -0.171 6.171 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.044 3.956 18 N -0.917 5.917 19 Si 0.915 3.085 20 H -0.263 1.263 21 H -0.259 1.259 22 H -0.235 1.235 23 N -0.469 5.469 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.204 0.796 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.414 0.586 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 31.663 5.027 32.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.000 4.000 3 C -0.193 4.193 4 C -0.185 4.185 5 C -0.073 4.073 6 C -0.383 4.383 7 S 0.435 5.565 8 C -0.273 4.273 9 C 0.078 3.922 10 N -0.364 5.364 11 C 0.328 3.672 12 O -0.433 6.433 13 C -0.262 4.262 14 S 0.056 5.944 15 C -0.677 4.677 16 H 0.080 0.920 17 C -0.161 4.161 18 N -0.555 5.555 19 Si 0.737 3.263 20 H -0.188 1.188 21 H -0.183 1.183 22 H -0.159 1.159 23 N -0.184 5.184 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.221 0.779 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.250 0.750 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.901 30.560 4.444 31.268 hybrid contribution -1.815 -0.058 0.672 1.936 sum 3.085 30.502 5.115 31.082 Atomic orbital electron populations 1.21873 0.92424 1.01685 1.03278 1.19278 0.96090 0.94965 0.89635 1.21909 1.00909 0.92982 1.03521 1.21680 1.00448 0.99949 0.96441 1.20497 1.00430 0.90000 0.96383 1.27279 1.09521 1.06528 0.94975 1.84028 1.54116 1.06464 1.11935 1.26673 1.06187 1.01894 0.92521 1.19644 0.89004 0.80130 1.03429 1.45695 1.11383 1.05878 1.73468 1.19901 0.89111 0.82747 0.75439 1.90706 1.21884 1.79591 1.51078 1.23253 1.00514 0.95303 1.07133 1.84684 1.13909 1.01583 1.94232 1.22462 0.93126 0.96069 1.56028 0.91970 1.25581 1.00569 0.97006 0.92932 1.70020 1.29801 1.08235 1.47458 0.85859 0.80602 0.80100 0.79768 1.18777 1.18339 1.15861 1.66081 1.11910 1.12275 1.28179 0.91424 0.93968 0.90449 0.90516 0.93097 0.90988 0.93715 0.93720 0.91141 0.77860 0.88411 0.89696 0.74974 0.86999 0.86476 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.43 71.98 0.61 -0.95 16 2 C 0.00 0.04 0.90 -52.93 -0.05 0.00 16 3 C -0.14 -1.22 8.13 71.98 0.58 -0.63 16 4 C -0.13 -2.05 7.91 71.98 0.57 -1.48 16 5 C 0.06 1.01 5.41 41.52 0.22 1.23 16 6 C -0.24 -3.13 10.40 66.78 0.69 -2.44 16 7 S 0.18 2.56 23.18 -56.49 -1.31 1.25 16 8 C 0.00 0.08 6.75 88.52 0.60 0.68 16 9 C 0.20 4.59 6.25 85.63 0.54 5.12 16 10 N -0.71 -17.56 5.55 -466.78 -2.59 -20.15 16 11 C 0.54 18.49 7.85 87.66 0.69 19.17 16 12 O -0.56 -23.21 15.86 -3.05 -0.05 -23.26 16 13 C -0.11 -4.16 6.16 71.24 0.44 -3.72 16 14 S -0.17 -8.58 18.55 -56.49 -1.05 -9.63 16 15 C -0.53 -30.80 10.04 67.96 0.68 -30.12 16 16 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 17 C 0.04 2.62 5.50 84.86 0.47 3.08 16 18 N -0.92 -55.97 13.97 21.65 0.30 -55.67 16 19 Si 0.91 44.99 27.74 68.60 1.90 46.89 16 20 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.23 -11.46 6.74 99.48 0.67 -10.79 16 23 N -0.47 -10.10 9.55 -179.40 -1.71 -11.81 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.44 7.15 -2.39 -0.02 0.42 16 30 H 0.04 0.89 7.97 -2.39 -0.02 0.87 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.20 1.37 7.31 -2.91 -0.02 1.35 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.41 8.36 8.46 -92.71 -0.78 7.57 16 37 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 38 H 0.12 3.98 8.14 -2.40 -0.02 3.96 16 39 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -72.79 355.89 1.77 -71.02 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.23 Total: 11.40 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 6.04 Total: -10.06 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -4.00 Total: -87.63 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Atomic # 16 Polarization: -6.02 SS G_CDS: -2.36 Total: -8.38 kcal Total: -72.79 1.77 -71.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171579458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.293 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds