Wall clock time and date at job start Tue Mar 31 2020 10:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35974 * 117.00057 * 2 1 4 4 C 1.38589 * 120.07305 * 0.31818 * 3 2 1 5 5 C 1.38222 * 119.99751 * 180.29840 * 4 3 2 6 6 C 1.38268 * 120.15393 * 359.68134 * 5 4 3 7 7 C 1.38217 * 120.15427 * 359.97438 * 6 5 4 8 8 C 1.38592 * 119.99503 * 0.02562 * 7 6 5 9 9 O 1.35983 * 120.07666 * 180.02562 * 8 7 6 10 10 C 1.34756 * 116.99759 * 266.07318 * 9 8 7 11 11 O 1.21529 * 120.00374 * 5.10658 * 10 9 8 12 12 C 1.47386 * 119.99889 * 185.10873 * 10 9 8 13 13 C 1.39737 * 120.20337 * 359.97438 * 12 10 9 14 14 C 1.37808 * 119.91302 * 179.97438 * 13 12 10 15 15 C 1.38594 * 120.33108 * 0.02562 * 14 13 12 16 16 C 1.38020 * 120.41471 * 0.02562 * 15 14 13 17 17 C 1.38830 * 120.07970 * 359.97438 * 16 15 14 18 18 O 1.35512 * 120.16739 * 179.97438 * 17 16 15 19 19 C 1.34810 * 116.99804 * 354.05127 * 18 17 16 20 20 H 1.08006 * 120.00108 * 354.84600 * 19 18 17 21 21 C 1.38698 * 119.99891 * 174.85150 * 19 18 17 22 22 N 1.31513 * 120.00052 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47361 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47094 * 119.99906 * 23 21 19 26 26 H 1.48510 * 109.46851 * 239.99496 * 23 21 19 27 27 H 1.09001 * 109.46845 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47376 * 299.99958 * 1 2 3 29 29 H 1.08995 * 109.47533 * 60.00298 * 1 2 3 30 30 H 1.07999 * 120.00371 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.92218 * 179.70357 * 5 4 3 32 32 H 1.08004 * 119.92606 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.00290 * 180.02562 * 7 6 5 34 34 H 1.07995 * 120.04653 * 0.02562 * 13 12 10 35 35 H 1.07998 * 119.83223 * 180.02562 * 14 13 12 36 36 H 1.07996 * 119.78689 * 180.27483 * 15 14 13 37 37 H 1.08000 * 119.96167 * 180.02562 * 16 15 14 38 38 H 0.97004 * 119.99930 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2930 2.3748 0.0067 5 6 1.9221 3.6055 0.0004 6 6 3.3027 3.6798 -0.0058 7 6 4.0602 2.5237 -0.0053 8 6 3.4360 1.2863 0.0009 9 8 4.1796 0.1479 0.0020 10 6 4.4410 -0.4131 -1.1951 11 8 4.0974 0.1476 -2.2170 12 6 5.1437 -1.7068 -1.2649 13 6 5.5412 -2.3551 -0.0925 14 6 6.1974 -3.5647 -0.1647 15 6 6.4662 -4.1428 -1.3954 16 6 6.0807 -3.5139 -2.5619 17 6 5.4187 -2.2947 -2.5091 18 8 5.0398 -1.6754 -3.6534 19 6 5.4428 -2.2324 -4.8130 20 1 6.1084 -3.0829 -4.8010 21 6 5.0027 -1.7131 -6.0215 22 7 4.1919 -0.6778 -6.0361 23 14 5.5617 -2.4845 -7.6284 24 1 6.4651 -3.6275 -7.3410 25 1 4.3779 -2.9666 -8.3842 26 1 6.2869 -1.4721 -8.4375 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 0.2144 2.3197 0.0114 31 1 1.3338 4.5113 0.0008 32 1 3.7905 4.6434 -0.0103 33 1 5.1385 2.5846 -0.0098 34 1 5.3338 -1.9091 0.8689 35 1 6.5037 -4.0648 0.7422 36 1 6.9770 -5.0931 -1.4416 37 1 6.2935 -3.9711 -3.5169 38 1 3.8844 -0.3144 -6.8813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194071678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:02 Heat of formation + Delta-G solvation = -75.685108 kcal Electronic energy + Delta-G solvation = -25628.777930 eV Core-core repulsion = 21789.647458 eV Total energy + Delta-G solvation = -3839.130472 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80960 -39.46749 -38.64564 -37.17792 -36.41423 -35.73713 -32.41582 -30.98007 -30.24992 -29.71773 -28.96245 -27.21549 -25.51206 -24.19148 -22.37405 -22.17348 -21.44360 -20.30037 -18.22743 -18.05513 -17.57315 -17.01419 -16.49251 -16.18602 -15.54847 -15.07101 -14.74363 -14.65777 -14.45260 -14.25466 -14.00405 -13.80050 -13.65156 -13.21282 -12.84240 -12.62157 -12.37882 -12.05836 -11.78706 -11.75807 -11.38079 -11.20276 -11.11029 -11.05658 -10.94255 -10.78444 -10.47483 -10.31491 -9.81536 -9.37850 -8.93759 -8.75868 -8.32316 -8.04001 -7.38202 -6.51441 -4.11047 1.22570 1.46324 1.59940 2.31232 3.08830 3.09282 3.15385 3.25980 3.30893 3.48729 3.88341 3.98762 4.54798 4.82889 4.88600 5.04136 5.09243 5.10135 5.16875 5.19839 5.38050 5.45370 5.51070 5.57441 5.65009 5.72879 5.89122 6.12841 6.18565 6.24893 6.33638 6.49788 6.57609 6.64486 6.74517 6.92095 7.04362 7.12559 7.22803 7.28860 7.50231 7.65919 7.86923 8.77747 8.88770 9.58080 10.62302 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.004617 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.826374 B = 6062.488464 C = 7285.852060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.304 6.304 3 C 0.126 3.874 4 C -0.201 4.201 5 C -0.084 4.084 6 C -0.146 4.146 7 C -0.082 4.082 8 C 0.070 3.930 9 O -0.297 6.297 10 C 0.497 3.503 11 O -0.461 6.461 12 C -0.212 4.212 13 C -0.014 4.014 14 C -0.234 4.234 15 C -0.043 4.043 16 C -0.238 4.238 17 C 0.191 3.809 18 O -0.125 6.125 19 C -0.402 4.402 20 H 0.097 0.903 21 C 0.044 3.956 22 N -0.831 5.831 23 Si 0.943 3.057 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.135 0.865 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 2.824 12.021 12.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.217 6.217 3 C 0.080 3.920 4 C -0.220 4.220 5 C -0.102 4.102 6 C -0.164 4.164 7 C -0.101 4.101 8 C 0.028 3.972 9 O -0.214 6.214 10 C 0.343 3.657 11 O -0.345 6.345 12 C -0.215 4.215 13 C -0.033 4.033 14 C -0.253 4.253 15 C -0.062 4.062 16 C -0.257 4.257 17 C 0.132 3.868 18 O -0.023 6.023 19 C -0.477 4.477 20 H 0.114 0.886 21 C -0.164 4.164 22 N -0.462 5.462 23 Si 0.767 3.233 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.199 1.199 27 H 0.119 0.881 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.851 3.201 11.402 12.453 hybrid contribution -0.063 -0.260 -0.874 0.914 sum -3.913 2.941 10.528 11.610 Atomic orbital electron populations 1.23082 0.78466 1.04132 1.01097 1.86196 1.21299 1.26114 1.88087 1.19309 0.91362 0.85170 0.96204 1.21102 0.99979 0.91837 1.09058 1.20940 0.94661 0.96878 0.97685 1.20890 0.93732 0.97882 1.03940 1.21142 1.00785 0.90503 0.97654 1.17811 0.86411 0.86082 1.06909 1.84685 1.65226 1.36746 1.34771 1.21485 0.78029 0.85525 0.80686 1.91010 1.48050 1.61429 1.33977 1.17935 1.15531 0.95713 0.92352 1.20978 0.92565 0.93555 0.96189 1.20539 1.09159 0.98416 0.97146 1.20972 0.95182 0.97766 0.92255 1.21104 1.08011 0.97218 0.99368 1.19230 0.90863 0.90016 0.86706 1.84167 1.61538 1.45661 1.10942 1.21579 1.28987 1.16105 0.81048 0.88587 1.25427 0.95876 0.96060 0.99027 1.70132 1.28450 1.20175 1.27466 0.85627 0.78686 0.78958 0.80032 1.18851 1.19960 1.19933 0.88119 0.92758 0.92517 0.85019 0.85510 0.85278 0.84646 0.85709 0.86906 0.86915 0.84784 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.30 -5.43 10.28 -34.15 -0.35 -5.78 16 3 C 0.13 2.23 6.70 -39.10 -0.26 1.97 16 4 C -0.20 -2.83 9.04 -39.46 -0.36 -3.19 16 5 C -0.08 -1.05 10.04 -39.58 -0.40 -1.45 16 6 C -0.15 -1.95 10.04 -39.58 -0.40 -2.34 16 7 C -0.08 -1.34 9.98 -39.46 -0.39 -1.73 16 8 C 0.07 1.35 4.94 -39.10 -0.19 1.15 16 9 O -0.30 -6.21 9.06 -30.45 -0.28 -6.49 16 10 C 0.50 12.07 7.83 34.45 0.27 12.34 16 11 O -0.46 -13.14 14.95 -26.61 -0.40 -13.53 16 12 C -0.21 -4.94 5.89 -104.83 -0.62 -5.55 16 13 C -0.01 -0.27 9.61 -39.18 -0.38 -0.65 16 14 C -0.23 -3.98 10.02 -39.61 -0.40 -4.38 16 15 C -0.04 -0.77 10.03 -39.53 -0.40 -1.16 16 16 C -0.24 -5.12 9.12 -39.44 -0.36 -5.48 16 17 C 0.19 4.84 6.66 -38.57 -0.26 4.58 16 18 O -0.13 -3.71 7.84 -21.03 -0.16 -3.87 16 19 C -0.40 -11.30 9.44 30.90 0.29 -11.00 16 20 H 0.10 2.44 5.30 -52.48 -0.28 2.16 16 21 C 0.04 1.22 5.49 -17.52 -0.10 1.13 16 22 N -0.83 -24.93 13.67 55.48 0.76 -24.17 16 23 Si 0.94 20.32 29.55 -169.99 -5.02 15.30 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 29 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 30 H 0.13 1.46 6.30 -52.49 -0.33 1.13 16 31 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 33 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.12 2.06 7.61 -52.49 -0.40 1.66 16 35 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.13 2.81 5.72 -52.49 -0.30 2.51 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 338.31 15.07 5.10 5.10 Total: -1.00 -35.55 338.31 -7.08 -42.63 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.78 Total: 5.27 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -2.95 Total: -14.45 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.76 Total: -24.17 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -1.19 Total: -29.68 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.55 -7.08 -42.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194071678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.055 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds