Wall clock time and date at job start Tue Mar 31 2020 10:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35974 * 117.00057 * 2 1 4 4 C 1.38589 * 120.07305 * 0.31818 * 3 2 1 5 5 C 1.38222 * 119.99751 * 180.29840 * 4 3 2 6 6 C 1.38268 * 120.15393 * 359.68134 * 5 4 3 7 7 C 1.38217 * 120.15427 * 359.97438 * 6 5 4 8 8 C 1.38592 * 119.99503 * 0.02562 * 7 6 5 9 9 O 1.35983 * 120.07666 * 180.02562 * 8 7 6 10 10 C 1.34756 * 116.99759 * 266.07318 * 9 8 7 11 11 O 1.21529 * 120.00374 * 5.10658 * 10 9 8 12 12 C 1.47386 * 119.99889 * 185.10873 * 10 9 8 13 13 C 1.39737 * 120.20337 * 359.97438 * 12 10 9 14 14 C 1.37808 * 119.91302 * 179.97438 * 13 12 10 15 15 C 1.38594 * 120.33108 * 0.02562 * 14 13 12 16 16 C 1.38020 * 120.41471 * 0.02562 * 15 14 13 17 17 C 1.38830 * 120.07970 * 359.97438 * 16 15 14 18 18 O 1.35512 * 120.16739 * 179.97438 * 17 16 15 19 19 C 1.34810 * 116.99804 * 354.05127 * 18 17 16 20 20 H 1.08006 * 120.00108 * 354.84600 * 19 18 17 21 21 C 1.38698 * 119.99891 * 174.85150 * 19 18 17 22 22 N 1.31513 * 120.00052 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99789 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47361 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47094 * 119.99906 * 23 21 19 26 26 H 1.48510 * 109.46851 * 239.99496 * 23 21 19 27 27 H 1.09001 * 109.46845 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47376 * 299.99958 * 1 2 3 29 29 H 1.08995 * 109.47533 * 60.00298 * 1 2 3 30 30 H 1.07999 * 120.00371 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.92218 * 179.70357 * 5 4 3 32 32 H 1.08004 * 119.92606 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.00290 * 180.02562 * 7 6 5 34 34 H 1.07995 * 120.04653 * 0.02562 * 13 12 10 35 35 H 1.07998 * 119.83223 * 180.02562 * 14 13 12 36 36 H 1.07996 * 119.78689 * 180.27483 * 15 14 13 37 37 H 1.08000 * 119.96167 * 180.02562 * 16 15 14 38 38 H 0.97004 * 119.99930 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2930 2.3748 0.0067 5 6 1.9221 3.6055 0.0004 6 6 3.3027 3.6798 -0.0058 7 6 4.0602 2.5237 -0.0053 8 6 3.4360 1.2863 0.0009 9 8 4.1796 0.1479 0.0020 10 6 4.4410 -0.4131 -1.1951 11 8 4.0974 0.1476 -2.2170 12 6 5.1437 -1.7068 -1.2649 13 6 5.5412 -2.3551 -0.0925 14 6 6.1974 -3.5647 -0.1647 15 6 6.4662 -4.1428 -1.3954 16 6 6.0807 -3.5139 -2.5619 17 6 5.4187 -2.2947 -2.5091 18 8 5.0398 -1.6754 -3.6534 19 6 5.4428 -2.2324 -4.8130 20 1 6.1084 -3.0829 -4.8010 21 6 5.0027 -1.7131 -6.0215 22 7 4.1919 -0.6778 -6.0361 23 14 5.5617 -2.4845 -7.6284 24 1 6.4651 -3.6275 -7.3410 25 1 4.3779 -2.9666 -8.3842 26 1 6.2869 -1.4721 -8.4375 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 0.2144 2.3197 0.0114 31 1 1.3338 4.5113 0.0008 32 1 3.7905 4.6434 -0.0103 33 1 5.1385 2.5846 -0.0098 34 1 5.3338 -1.9091 0.8689 35 1 6.5037 -4.0648 0.7422 36 1 6.9770 -5.0931 -1.4416 37 1 6.2935 -3.9711 -3.5169 38 1 3.8844 -0.3144 -6.8813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194071678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:02 Heat of formation + Delta-G solvation = -97.887675 kcal Electronic energy + Delta-G solvation = -25629.740706 eV Core-core repulsion = 21789.647458 eV Total energy + Delta-G solvation = -3840.093248 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.31236 -41.04637 -40.23825 -38.47532 -38.13772 -37.45641 -34.39523 -32.56122 -31.46973 -30.96198 -30.65949 -28.26072 -27.49101 -25.80085 -23.86624 -23.35973 -23.03554 -21.88093 -19.96257 -19.58579 -19.24335 -18.52402 -17.87252 -17.84361 -16.74247 -16.54606 -16.35323 -16.22369 -16.00541 -15.65779 -15.52589 -15.38735 -15.20344 -14.68473 -14.50707 -14.27705 -13.60484 -13.56328 -13.16276 -13.10820 -12.96291 -12.76079 -12.58754 -12.39292 -12.33789 -12.13017 -12.10003 -11.79274 -11.67965 -11.19583 -10.88544 -9.98541 -9.95917 -9.27186 -9.15109 -8.50270 -6.21555 -0.09882 -0.01605 0.29107 0.65997 1.32267 1.42950 1.52678 1.65616 1.84049 2.12867 2.23177 2.73510 2.79569 3.13306 3.32337 3.67978 3.78940 3.93891 4.05857 4.15423 4.21551 4.28605 4.31025 4.33225 4.42706 4.49276 4.58559 4.60192 4.73829 4.94244 5.03511 5.09272 5.11144 5.20261 5.36643 5.43634 5.46107 5.57184 5.63124 5.72133 5.90987 6.09537 6.27871 6.88341 7.02038 7.69342 8.70247 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.004617 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.826374 B = 6062.488464 C = 7285.852060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.103 3.897 4 C -0.202 4.202 5 C -0.070 4.070 6 C -0.143 4.143 7 C -0.098 4.098 8 C 0.012 3.988 9 O -0.288 6.288 10 C 0.496 3.504 11 O -0.518 6.518 12 C -0.237 4.237 13 C -0.014 4.014 14 C -0.201 4.201 15 C -0.025 4.025 16 C -0.253 4.253 17 C 0.158 3.842 18 O -0.188 6.188 19 C -0.427 4.427 20 H 0.113 0.887 21 C -0.021 4.021 22 N -0.904 5.904 23 Si 1.026 2.974 24 H -0.242 1.242 25 H -0.268 1.268 26 H -0.269 1.269 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.163 0.837 31 H 0.174 0.826 32 H 0.166 0.834 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.134 0.866 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.982 1.776 14.354 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.057 3.943 4 C -0.220 4.220 5 C -0.088 4.088 6 C -0.161 4.161 7 C -0.116 4.116 8 C -0.030 4.030 9 O -0.204 6.204 10 C 0.344 3.656 11 O -0.406 6.406 12 C -0.239 4.239 13 C -0.032 4.032 14 C -0.220 4.220 15 C -0.042 4.042 16 C -0.272 4.272 17 C 0.103 3.897 18 O -0.090 6.090 19 C -0.502 4.502 20 H 0.130 0.870 21 C -0.221 4.221 22 N -0.539 5.539 23 Si 0.844 3.156 24 H -0.165 1.165 25 H -0.193 1.193 26 H -0.194 1.194 27 H 0.131 0.869 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.181 0.819 31 H 0.191 0.809 32 H 0.184 0.816 33 H 0.156 0.844 34 H 0.168 0.832 35 H 0.185 0.815 36 H 0.182 0.818 37 H 0.151 0.849 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.267 2.116 13.835 14.372 hybrid contribution -0.240 0.044 -1.114 1.141 sum -3.508 2.160 12.720 13.371 Atomic orbital electron populations 1.23402 0.75943 1.05622 1.02641 1.86125 1.24143 1.26993 1.88351 1.19633 0.91295 0.86397 0.97012 1.21552 1.01475 0.91165 1.07834 1.21547 0.94720 0.97947 0.94573 1.21375 0.94347 0.98192 1.02200 1.21413 1.01458 0.90771 0.97960 1.18422 0.87534 0.86177 1.10854 1.84659 1.65292 1.37809 1.32658 1.21899 0.76964 0.85724 0.80968 1.90969 1.50436 1.63091 1.36098 1.18421 1.16112 0.95914 0.93472 1.21368 0.92053 0.94265 0.95549 1.21219 1.05172 0.96602 0.98958 1.21557 0.93021 0.98860 0.90810 1.21301 1.08352 0.96301 1.01268 1.19959 0.91532 0.91680 0.86553 1.84169 1.64564 1.48086 1.12170 1.22148 1.29819 1.16715 0.81523 0.87023 1.26837 0.95704 0.96407 1.03139 1.70322 1.31919 1.23286 1.28400 0.84455 0.78573 0.78435 0.74170 1.16525 1.19275 1.19431 0.86872 0.89680 0.92302 0.81939 0.80901 0.81641 0.84426 0.83177 0.81501 0.81812 0.84869 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.34 -12.73 10.28 -79.41 -0.82 -13.55 16 3 C 0.10 3.76 6.70 22.58 0.15 3.91 16 4 C -0.20 -5.43 9.04 22.35 0.20 -5.23 16 5 C -0.07 -1.58 10.04 22.27 0.22 -1.35 16 6 C -0.14 -3.59 10.04 22.27 0.22 -3.37 16 7 C -0.10 -3.27 9.98 22.35 0.22 -3.04 16 8 C 0.01 0.48 4.94 22.58 0.11 0.60 16 9 O -0.29 -12.78 9.06 4.06 0.04 -12.75 16 10 C 0.50 25.88 7.83 70.23 0.55 26.43 16 11 O -0.52 -32.34 14.95 26.74 0.40 -31.94 16 12 C -0.24 -11.41 5.89 -20.00 -0.12 -11.53 16 13 C -0.01 -0.51 9.61 22.53 0.22 -0.30 16 14 C -0.20 -5.88 10.02 22.25 0.22 -5.66 16 15 C -0.02 -0.77 10.03 22.30 0.22 -0.55 16 16 C -0.25 -10.82 9.12 22.36 0.20 -10.62 16 17 C 0.16 8.39 6.66 22.92 0.15 8.54 16 18 O -0.19 -12.05 7.84 0.97 0.01 -12.05 16 19 C -0.43 -25.59 9.44 67.93 0.64 -24.95 16 20 H 0.11 5.94 5.30 -2.91 -0.02 5.92 16 21 C -0.02 -1.25 5.49 84.85 0.47 -0.79 16 22 N -0.90 -58.72 13.67 21.62 0.30 -58.43 16 23 Si 1.03 43.54 29.55 68.60 2.03 45.56 16 24 H -0.24 -9.22 7.11 99.48 0.71 -8.51 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 27 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.08 1.46 7.65 -2.38 -0.02 1.44 16 29 H 0.06 1.35 7.68 -2.39 -0.02 1.33 16 30 H 0.16 3.21 6.30 -2.91 -0.02 3.19 16 31 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.15 4.62 7.61 -2.91 -0.02 4.60 16 35 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 37 H 0.13 5.61 5.72 -2.91 -0.02 5.60 16 38 H 0.27 16.12 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -90.48 338.31 7.86 -82.61 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 1.10 Total: 26.89 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 4.81 Total: -26.36 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.30 Total: -58.43 kcal Atomic # 8 Polarization: -69.91 SS G_CDS: -0.37 Total: -70.28 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -90.48 7.86 -82.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194071678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.274 kcal (2) G-P(sol) polarization free energy of solvation -90.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds