Wall clock time and date at job start Tue Mar 31 2020 11:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46934 * 106.52986 * 3 2 1 5 5 C 1.36936 * 119.99779 * 268.92946 * 4 3 2 6 6 H 1.08001 * 120.00026 * 189.89862 * 5 4 3 7 7 C 1.38810 * 120.00049 * 9.89996 * 5 4 3 8 8 N 1.31617 * 120.00078 * 24.72822 * 7 5 4 9 9 Si 1.86803 * 120.00278 * 204.72685 * 7 5 4 10 10 H 1.48501 * 109.47110 * 59.99637 * 9 7 5 11 11 H 1.48500 * 109.47433 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46711 * 300.00284 * 9 7 5 13 13 C 1.46497 * 120.00229 * 88.93236 * 4 3 2 14 14 C 1.50703 * 109.46953 * 269.99862 * 13 4 3 15 15 N 1.31091 * 119.13606 * 269.97809 * 14 13 4 16 16 C 1.33649 * 121.34409 * 180.02562 * 15 14 13 17 17 C 1.40599 * 121.07098 * 179.97438 * 16 15 14 18 18 C 1.36066 * 119.75700 * 180.02562 * 17 16 15 19 19 C 1.39370 * 121.07110 * 0.02562 * 18 17 16 20 20 C 1.36132 * 120.86973 * 359.97438 * 19 18 17 21 21 C 1.40444 * 119.61658 * 359.72375 * 20 19 18 22 22 C 1.40715 * 121.36656 * 179.68193 * 21 20 19 23 23 C 1.50693 * 120.92681 * 0.61108 * 22 21 20 24 24 C 1.36708 * 118.14267 * 180.34173 * 22 21 20 25 25 Cl 1.73599 * 120.04695 * 180.29421 * 24 22 21 26 26 H 4.40639 * 5.51497 * 180.02562 * 4 1 2 27 27 H 1.08997 * 109.47405 * 346.53080 * 3 2 1 28 28 H 1.08994 * 109.47195 * 226.52525 * 3 2 1 29 29 H 0.96999 * 120.00216 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.47578 * 149.99965 * 13 4 3 31 31 H 1.08999 * 109.47167 * 29.99461 * 13 4 3 32 32 H 1.08000 * 120.11876 * 359.97438 * 17 16 15 33 33 H 1.07995 * 119.46643 * 180.02562 * 18 17 16 34 34 H 1.07993 * 119.56070 * 179.97438 * 19 18 17 35 35 H 1.08002 * 120.19093 * 180.02562 * 20 19 18 36 36 H 1.08999 * 109.47253 * 269.71917 * 23 22 21 37 37 H 1.09000 * 109.47092 * 149.72522 * 23 22 21 38 38 H 1.08998 * 109.47135 * 29.72263 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3939 -1.3242 5 6 3.3837 -0.5612 -2.2733 6 1 3.8912 -0.2936 -3.1883 7 6 2.9843 -1.8733 -2.0594 8 7 1.9852 -2.1322 -1.2426 9 14 3.8646 -3.2715 -2.9307 10 1 5.2999 -3.2667 -2.5496 11 1 3.2514 -4.5651 -2.5359 12 1 3.7421 -3.0942 -4.4000 13 6 3.3554 1.8087 -1.6330 14 6 2.0918 2.4026 -2.2003 15 7 1.8976 2.3708 -3.4964 16 6 0.7934 2.8848 -4.0467 17 6 0.5912 2.8481 -5.4376 18 6 -0.5427 3.3799 -5.9694 19 6 -1.5129 3.9641 -5.1571 20 6 -1.3526 4.0184 -3.8063 21 6 -0.1974 3.4737 -3.2220 22 6 0.0090 3.5155 -1.8307 23 6 -1.0132 4.1370 -0.9144 24 6 1.1603 2.9717 -1.3331 25 17 1.4620 2.9895 0.3764 26 1 -1.0500 0.0002 0.0001 27 1 3.0098 -0.9985 0.2394 28 1 3.0090 0.7078 0.7457 29 1 1.7059 -3.0490 -1.0933 30 1 4.1594 1.8999 -2.3632 31 1 3.6297 2.3408 -0.7221 32 1 1.3336 2.4002 -6.0815 33 1 -0.6934 3.3487 -7.0384 34 1 -2.4035 4.3791 -5.6052 35 1 -2.1116 4.4733 -3.1872 36 1 -0.7900 5.1961 -0.7861 37 1 -0.9825 3.6393 0.0549 38 1 -2.0065 4.0250 -1.3491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281444086.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:39 Heat of formation + Delta-G solvation = 119.738691 kcal Electronic energy + Delta-G solvation = -23797.686588 eV Core-core repulsion = 20440.032243 eV Total energy + Delta-G solvation = -3357.654345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.88399 -38.83748 -37.63402 -37.15543 -35.50668 -33.59664 -33.24925 -31.44431 -31.15745 -28.78634 -28.25225 -27.75045 -24.50682 -24.42897 -22.81878 -21.62181 -19.52408 -18.97941 -18.60095 -18.19069 -17.29316 -16.80605 -16.03645 -15.92660 -15.50865 -15.26017 -15.21200 -15.04422 -14.79172 -14.27649 -14.02853 -13.76750 -13.48197 -13.35658 -13.15270 -13.08029 -12.80813 -12.55956 -12.48242 -12.34329 -12.28140 -12.13832 -11.91467 -11.67723 -10.93553 -10.76890 -10.70543 -10.40291 -10.17162 -9.50510 -9.11813 -9.03996 -7.85449 -5.20358 -0.56962 -0.18497 0.99929 1.16817 1.46670 1.48536 1.55321 1.92346 2.41187 2.58151 2.70530 3.07794 3.23006 3.41259 3.56904 3.64289 3.87610 3.90073 3.93813 4.15800 4.24850 4.32577 4.44461 4.46458 4.54146 4.69388 4.71937 4.89083 4.96347 4.99754 5.03199 5.08371 5.17318 5.35830 5.43849 5.49164 5.58644 5.64087 5.72349 5.95541 6.22315 7.03364 7.10030 7.46998 7.77251 8.17386 9.14705 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.006125 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.039950 B = 4569.963599 C = 5784.083726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.099 4.099 3 C 0.270 3.730 4 N -0.577 5.577 5 C -0.258 4.258 6 H 0.072 0.928 7 C -0.044 4.044 8 N -0.909 5.909 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.296 1.296 12 H -0.288 1.288 13 C 0.181 3.819 14 C 0.150 3.850 15 N -0.491 5.491 16 C 0.100 3.900 17 C -0.124 4.124 18 C -0.088 4.088 19 C -0.119 4.119 20 C -0.094 4.094 21 C -0.121 4.121 22 C -0.027 4.027 23 C -0.115 4.115 24 C -0.089 4.089 25 Cl -0.045 7.045 26 H 0.205 0.795 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.247 0.753 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.685 15.646 -1.794 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.102 4.102 3 C 0.146 3.854 4 N -0.295 5.295 5 C -0.387 4.387 6 H 0.090 0.910 7 C -0.240 4.240 8 N -0.553 5.553 9 Si 0.789 3.211 10 H -0.200 1.200 11 H -0.223 1.223 12 H -0.214 1.214 13 C 0.054 3.946 14 C -0.007 4.007 15 N -0.202 5.202 16 C -0.021 4.021 17 C -0.143 4.143 18 C -0.108 4.108 19 C -0.137 4.137 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.036 4.036 23 C -0.171 4.171 24 C -0.118 4.118 25 Cl -0.016 7.016 26 H 0.222 0.778 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.144 0.856 33 H 0.178 0.822 34 H 0.185 0.815 35 H 0.178 0.822 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.057 15.097 -2.225 16.813 hybrid contribution -0.335 -1.123 0.069 1.174 sum -7.392 13.975 -2.156 15.956 Atomic orbital electron populations 1.24552 0.95931 1.07569 1.04620 1.24212 0.95464 0.94238 0.96315 1.17945 0.83186 0.99013 0.85292 1.44577 1.74175 1.00302 1.10477 1.19423 1.30568 0.88133 1.00612 0.91026 1.25458 0.97740 0.99848 1.00976 1.70322 1.25098 1.18401 1.41513 0.85455 0.79022 0.78836 0.77787 1.20015 1.22279 1.21427 1.20231 0.91138 0.84245 0.98953 1.22832 0.99063 0.90366 0.88413 1.68007 1.22440 1.17046 1.12703 1.19521 0.90603 0.96215 0.95762 1.20956 0.99931 1.01584 0.91816 1.21300 0.92136 0.95342 1.02015 1.21342 1.00181 0.98991 0.93153 1.21332 0.95402 0.98084 0.96400 1.18891 0.97802 1.03029 0.92658 1.20402 0.94047 0.95090 0.94041 1.20973 0.96690 1.01616 0.97781 1.21457 0.98218 1.05539 0.86588 1.98311 1.95414 1.97174 1.10671 0.77760 0.90977 0.91760 0.94349 0.91450 0.89371 0.85573 0.82172 0.81517 0.82162 0.87979 0.90652 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.24 19.11 74.32 1.42 -12.82 16 2 C -0.10 -4.84 8.91 31.13 0.28 -4.56 16 3 C 0.27 12.97 4.92 84.57 0.42 13.39 16 4 N -0.58 -28.69 2.47 -716.91 -1.77 -30.47 16 5 C -0.26 -14.27 9.70 84.03 0.81 -13.45 16 6 H 0.07 4.03 7.92 -2.91 -0.02 4.00 16 7 C -0.04 -2.46 4.88 84.86 0.41 -2.04 16 8 N -0.91 -52.82 9.22 21.65 0.20 -52.63 16 9 Si 0.96 45.87 29.62 68.60 2.03 47.90 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 13 C 0.18 7.78 5.57 85.63 0.48 8.26 16 14 C 0.15 6.40 6.28 42.95 0.27 6.67 16 15 N -0.49 -21.94 10.24 -176.68 -1.81 -23.75 16 16 C 0.10 3.86 6.60 40.30 0.27 4.13 16 17 C -0.12 -3.95 9.98 22.34 0.22 -3.73 16 18 C -0.09 -1.99 9.94 22.04 0.22 -1.78 16 19 C -0.12 -2.30 9.96 22.05 0.22 -2.08 16 20 C -0.09 -2.15 9.31 22.32 0.21 -1.95 16 21 C -0.12 -3.94 5.74 -21.28 -0.12 -4.06 16 22 C -0.03 -0.87 5.92 -19.62 -0.12 -0.99 16 23 C -0.11 -2.53 9.20 71.23 0.66 -1.88 16 24 C -0.09 -3.29 5.74 22.20 0.13 -3.16 16 25 Cl -0.04 -1.47 22.33 -2.72 -0.06 -1.53 16 26 H 0.21 8.17 7.80 -4.42 -0.03 8.13 16 27 H 0.07 3.84 6.32 -2.39 -0.02 3.82 16 28 H 0.06 2.68 7.35 -2.39 -0.02 2.67 16 29 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.07 2.89 8.03 -2.39 -0.02 2.87 16 31 H 0.09 3.30 6.60 -2.39 -0.02 3.29 16 32 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 33 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.16 2.51 6.45 -2.91 -0.02 2.49 16 36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.77 6.96 -2.39 -0.02 1.75 16 38 H 0.10 1.66 6.52 -2.39 -0.02 1.65 16 Total: -1.00 -70.43 331.55 5.44 -64.98 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 1.08 Total: 15.55 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 5.77 Total: -20.07 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -3.38 Total: -106.84 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.06 Total: -1.53 kcal Total: -70.43 5.44 -64.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281444086.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.724 kcal (2) G-P(sol) polarization free energy of solvation -70.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds