Wall clock time and date at job start Tue Mar 31 2020 11:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34773 * 116.99787 * 2 1 4 4 O 1.21536 * 120.00377 * 359.97438 * 3 2 1 5 5 C 1.47233 * 120.00259 * 180.02562 * 3 2 1 6 6 C 1.47065 * 127.19724 * 0.02562 * 5 3 2 7 7 C 1.34156 * 105.94826 * 179.97438 * 6 5 3 8 8 C 1.50699 * 125.42857 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46959 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.47078 * 119.99660 * 8 7 6 11 11 S 1.81401 * 109.47307 * 239.99780 * 8 7 6 12 12 O 1.42105 * 109.46907 * 301.39127 * 11 8 7 13 13 C 1.81398 * 103.00314 * 184.99960 * 11 8 7 14 14 C 1.52995 * 109.47072 * 180.02562 * 13 11 8 15 15 C 1.50705 * 109.46905 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00063 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00193 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00358 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99614 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46916 * 90.00439 * 19 17 15 21 21 H 1.48499 * 109.47072 * 209.99898 * 19 17 15 22 22 H 1.48497 * 109.47526 * 330.00219 * 19 17 15 23 23 O 1.34222 * 109.14312 * 0.23879 * 7 6 5 24 24 C 1.33623 * 110.92430 * 359.59278 * 23 7 6 25 25 C 1.50701 * 125.80795 * 180.13200 * 24 23 7 26 26 H 1.09002 * 109.47699 * 60.00057 * 1 2 3 27 27 H 1.09005 * 109.46849 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47520 * 299.99614 * 1 2 3 29 29 H 1.08001 * 127.02694 * 0.02562 * 6 5 3 30 30 H 1.09002 * 109.47153 * 60.00207 * 10 8 7 31 31 H 1.08998 * 109.47533 * 179.97438 * 10 8 7 32 32 H 1.08996 * 109.47853 * 300.00179 * 10 8 7 33 33 H 1.09000 * 109.47005 * 300.00050 * 13 11 8 34 34 H 1.09001 * 109.46972 * 59.99530 * 13 11 8 35 35 H 1.09000 * 109.47225 * 299.99889 * 14 13 11 36 36 H 1.08997 * 109.47127 * 60.00429 * 14 13 11 37 37 H 0.96995 * 119.99983 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.46977 * 270.32060 * 25 24 23 39 39 H 1.08999 * 109.47266 * 30.31945 * 25 24 23 40 40 H 1.08996 * 109.47191 * 150.32234 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2009 0.0000 4 8 1.4018 2.2202 -0.0005 5 6 3.5340 1.2780 -0.0006 6 6 4.4833 0.1548 -0.0017 7 6 5.7065 0.7059 -0.0024 8 6 7.0074 -0.0548 -0.0032 9 1 6.8022 -1.1254 -0.0025 10 6 7.8109 0.3102 -1.2529 11 16 7.9619 0.3782 1.4774 12 8 8.2017 1.7788 1.4934 13 6 9.5286 -0.5006 1.2244 14 6 10.4601 -0.2334 2.4083 15 6 11.7619 -0.9630 2.1978 16 1 11.9097 -1.5581 1.3087 17 6 12.7636 -0.8717 3.1407 18 7 13.8994 -1.5087 2.9572 19 14 12.5075 0.1571 4.6788 20 1 11.9191 -0.6891 5.7479 21 1 13.8132 0.6963 5.1367 22 1 11.5868 1.2817 4.3745 23 8 5.5869 2.0427 0.0034 24 6 4.3013 2.4069 -0.0007 25 6 3.7860 3.8231 0.0009 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 4.2446 -0.8985 -0.0027 30 1 8.0161 1.3807 -1.2531 31 1 8.7521 -0.2396 -1.2533 32 1 7.2375 0.0501 -2.1426 33 1 9.3366 -1.5708 1.1479 34 1 9.9980 -0.1492 0.3056 35 1 10.6521 0.8368 2.4852 36 1 9.9904 -0.5852 3.3268 37 1 14.6043 -1.4441 3.6204 38 1 3.6631 4.1638 1.0289 39 1 4.4975 4.4692 -0.5134 40 1 2.8248 3.8606 -0.5117 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292253505.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:08 Heat of formation + Delta-G solvation = -116.420077 kcal Electronic energy + Delta-G solvation = -23434.594746 eV Core-core repulsion = 19729.141824 eV Total energy + Delta-G solvation = -3705.452922 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.107 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.88989 -40.36317 -36.72594 -35.37700 -34.53386 -33.75340 -33.37104 -31.48282 -31.09579 -28.46654 -26.94931 -25.58290 -24.01912 -23.16465 -21.69443 -20.98368 -19.72105 -18.04055 -17.37201 -17.07518 -16.80987 -16.60949 -16.25014 -15.99769 -15.22872 -14.87369 -14.45475 -14.23106 -13.95343 -13.80622 -13.56297 -13.43506 -13.29936 -13.13861 -12.79619 -12.65962 -12.46590 -12.42474 -12.25013 -11.78816 -11.70714 -11.38327 -11.09778 -11.06303 -10.81716 -10.63882 -10.28688 -10.10000 -9.95039 -9.58049 -9.32866 -8.61869 -8.60857 -7.85054 -6.11587 -4.11348 0.90342 1.41589 2.06849 2.27821 2.60133 2.81596 2.89922 3.27036 3.35853 3.41327 3.91879 4.19739 4.39791 4.46074 4.60587 4.78533 4.81588 4.86202 4.91879 5.04863 5.17413 5.21525 5.22726 5.27526 5.37009 5.52808 5.57735 5.66070 5.77399 5.82964 5.89432 6.00711 6.05945 6.11097 6.54872 6.84270 7.00527 7.15107 7.49855 7.65233 8.43925 8.91171 9.49392 11.01275 Molecular weight = 314.11amu Principal moments of inertia in cm(-1) A = 0.027067 B = 0.002703 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.217935 B =10356.496075 C =10485.524072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.351 6.351 3 C 0.545 3.455 4 O -0.514 6.514 5 C -0.242 4.242 6 C -0.159 4.159 7 C 0.019 3.981 8 C -0.346 4.346 9 H 0.150 0.850 10 C -0.148 4.148 11 S 1.225 4.775 12 O -0.831 6.831 13 C -0.409 4.409 14 C 0.003 3.997 15 C -0.518 4.518 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.873 3.127 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.263 1.263 23 O -0.154 6.154 24 C 0.098 3.902 25 C -0.088 4.088 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.167 0.833 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.022 0.978 36 H 0.023 0.977 37 H 0.265 0.735 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.140 1.575 -5.973 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.267 6.267 3 C 0.392 3.608 4 O -0.405 6.405 5 C -0.245 4.245 6 C -0.179 4.179 7 C -0.030 4.030 8 C -0.458 4.458 9 H 0.168 0.832 10 C -0.206 4.206 11 S 1.424 4.576 12 O -0.826 6.826 13 C -0.549 4.549 14 C -0.035 4.035 15 C -0.557 4.557 16 H 0.092 0.908 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.700 3.300 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.187 1.187 23 O -0.050 6.050 24 C 0.044 3.956 25 C -0.144 4.144 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.185 0.815 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -26.241 2.608 -5.177 26.873 hybrid contribution 0.808 0.854 -1.116 1.620 sum -25.433 3.462 -6.292 26.427 Atomic orbital electron populations 1.23283 0.75994 1.03791 1.02586 1.86576 1.23406 1.32364 1.84369 1.19921 0.87374 0.81384 0.72144 1.90816 1.66563 1.35873 1.47250 1.20060 0.90520 0.93890 1.19987 1.22559 0.89510 0.99658 1.06180 1.21338 0.95768 0.79663 1.06235 1.26436 0.98588 1.04548 1.16247 0.83221 1.21848 0.99867 1.02789 0.96056 1.70783 0.95973 0.92275 0.98611 1.93126 1.84566 1.26679 1.78242 1.27494 1.11766 1.09059 1.06531 1.19252 0.95009 0.97750 0.91530 1.21003 0.96816 1.30201 1.07728 0.90795 1.25012 0.94963 0.95154 0.98214 1.69894 1.05316 1.42775 1.35863 0.86870 0.78043 0.81510 0.83626 1.19783 1.21130 1.18744 1.83878 1.26634 1.24108 1.70351 1.22861 0.80353 0.96742 0.95675 1.20693 1.02251 0.86572 1.04866 0.91902 0.87930 0.91779 0.81541 0.91812 0.90506 0.91838 0.86833 0.89755 0.95925 0.95873 0.92558 0.88757 0.89812 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.31 16 2 O -0.35 -3.56 10.48 -40.69 -0.43 -3.98 16 3 C 0.55 6.49 7.95 34.39 0.27 6.77 16 4 O -0.51 -6.72 14.64 -19.29 -0.28 -7.00 16 5 C -0.24 -2.96 6.32 -103.29 -0.65 -3.62 16 6 C -0.16 -1.76 10.90 -37.44 -0.41 -2.17 16 7 C 0.02 0.24 5.78 -35.75 -0.21 0.04 16 8 C -0.35 -3.99 3.31 -27.88 -0.09 -4.09 16 9 H 0.15 1.13 8.09 -51.92 -0.42 0.71 16 10 C -0.15 -1.86 8.92 37.16 0.33 -1.52 16 11 S 1.22 17.85 12.66 -107.50 -1.36 16.49 16 12 O -0.83 -17.17 18.03 -35.23 -0.64 -17.80 16 13 C -0.41 -7.17 5.26 37.16 0.20 -6.97 16 14 C 0.00 0.08 4.05 -27.88 -0.11 -0.03 16 15 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 16 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 19 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 23 O -0.15 -2.26 10.43 7.71 0.08 -2.18 16 24 C 0.10 1.23 7.38 -34.94 -0.26 0.97 16 25 C -0.09 -0.85 9.89 36.01 0.36 -0.50 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.93 6.51 -51.93 -0.34 0.59 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.11 1.67 8.14 -51.92 -0.42 1.25 16 34 H 0.08 1.56 6.90 -51.92 -0.36 1.20 16 35 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 36 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.11 1.02 6.48 -51.93 -0.34 0.68 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -37.39 356.10 -6.70 -44.09 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.61 Total: -2.50 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 0.06 Total: -22.65 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.77 Total: -26.54 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.26 Total: -30.96 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: 17.85 SS G_CDS: -1.36 Total: 16.49 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.39 -6.70 -44.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292253505.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.333 kcal (2) G-P(sol) polarization free energy of solvation -37.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds