Wall clock time and date at job start Tue Mar 31 2020 10:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.46954 * 2 1 4 4 C 1.33311 * 120.00195 * 83.90584 * 3 2 1 5 5 H 1.08001 * 120.00038 * 319.81070 * 4 3 2 6 6 C 1.46792 * 120.00165 * 139.80668 * 4 3 2 7 7 N 1.29308 * 120.00262 * 164.59562 * 6 4 3 8 8 Si 1.86806 * 119.99949 * 344.60112 * 6 4 3 9 9 H 1.48495 * 109.46952 * 96.12968 * 8 6 4 10 10 H 1.48497 * 109.47088 * 216.13183 * 8 6 4 11 11 H 1.48507 * 109.46843 * 336.13326 * 8 6 4 12 12 C 1.34782 * 119.99847 * 264.17725 * 3 2 1 13 13 O 1.21508 * 119.99855 * 179.72186 * 12 3 2 14 14 C 1.47372 * 120.00040 * 359.73334 * 12 3 2 15 15 C 1.40022 * 120.20372 * 89.72070 * 14 12 3 16 16 F 1.35108 * 120.09915 * 359.97438 * 15 14 12 17 17 C 1.38175 * 119.79838 * 179.72041 * 15 14 12 18 18 C 1.50697 * 119.90307 * 180.29461 * 17 15 14 19 19 C 1.38343 * 120.19569 * 0.55866 * 17 15 14 20 20 C 1.38302 * 120.40972 * 359.71163 * 19 17 15 21 21 N 1.48012 * 119.90217 * 180.02562 * 20 19 17 22 22 O 1.31698 * 120.00375 * 359.97438 * 21 20 19 23 23 O 1.31704 * 119.99812 * 179.97438 * 21 20 19 24 24 C 1.38220 * 120.19634 * 0.02562 * 20 19 17 25 25 F 1.35098 * 120.10058 * 180.02562 * 24 20 19 26 26 H 1.08994 * 109.47468 * 306.09191 * 1 2 3 27 27 H 1.09001 * 109.47076 * 66.09081 * 1 2 3 28 28 H 1.09001 * 109.47289 * 186.08636 * 1 2 3 29 29 H 1.09005 * 109.47290 * 239.99782 * 2 1 3 30 30 H 1.08995 * 109.47018 * 119.99769 * 2 1 3 31 31 H 0.96996 * 120.00340 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47349 * 270.26315 * 18 17 15 33 33 H 1.09006 * 109.47010 * 30.25472 * 18 17 15 34 34 H 1.08998 * 109.47464 * 150.25895 * 18 17 15 35 35 H 1.08001 * 119.79673 * 179.69901 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1249 2.0506 1.1480 5 1 1.3602 1.9510 1.9042 6 6 3.2816 2.9229 1.3843 7 7 3.2516 3.7912 2.3420 8 14 4.7970 2.7786 0.3015 9 1 4.7308 3.7937 -0.7803 10 1 6.0143 3.0067 1.1207 11 1 4.8502 1.4204 -0.2969 12 6 2.3545 1.9771 -1.1612 13 8 2.7547 3.1244 -1.1618 14 6 2.2366 1.2372 -2.4303 15 6 1.0418 1.2754 -3.1595 16 9 -0.0088 1.9911 -2.7018 17 6 0.9423 0.5833 -4.3513 18 6 -0.3401 0.6282 -5.1414 19 6 2.0148 -0.1552 -4.8187 20 6 3.1969 -0.2033 -4.1023 21 7 4.3374 -0.9965 -4.6131 22 8 4.2255 -1.6555 -5.7478 23 8 5.4641 -1.0432 -3.9328 24 6 3.3164 0.4871 -2.9109 25 9 4.4721 0.4392 -2.2130 26 1 -0.3634 0.6053 0.8304 27 1 -0.3633 0.4165 -0.9395 28 1 -0.3634 -1.0219 0.1090 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.0158 4.3679 2.4979 32 1 -0.9931 -0.1836 -4.8207 33 1 -0.8379 1.5831 -4.9722 34 1 -0.1172 0.5176 -6.2026 35 1 1.9283 -0.6976 -5.7485 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312831099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:09 Heat of formation + Delta-G solvation = -45.630854 kcal Electronic energy + Delta-G solvation = -27580.434324 eV Core-core repulsion = 23220.670324 eV Total energy + Delta-G solvation = -4359.764001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -49.42503 -49.38540 -40.34212 -39.20742 -38.14213 -35.25818 -34.50337 -33.29924 -32.70454 -31.83016 -30.07174 -27.57859 -26.61447 -25.78342 -23.68381 -22.52237 -22.01740 -20.03832 -18.81625 -18.71931 -18.39207 -17.54866 -17.34924 -16.73714 -16.26341 -15.96836 -15.91988 -15.46132 -15.10411 -14.86939 -14.40811 -13.89219 -13.84576 -13.74877 -13.48330 -13.20427 -12.98407 -12.66187 -12.48984 -12.32298 -12.15583 -12.09956 -11.46838 -11.44421 -11.21399 -11.02853 -10.76993 -10.76390 -10.31831 -9.95467 -9.62627 -9.29412 -8.88403 -8.79451 -8.02272 -6.52891 -4.06993 -0.92781 0.26916 0.64541 0.84447 2.53970 2.87318 3.13068 3.43554 3.49412 3.58062 3.61857 3.78691 4.04575 4.11329 4.38746 4.47187 4.71532 4.88660 4.96660 5.06978 5.15777 5.17338 5.18350 5.29880 5.39447 5.53685 5.62136 5.67819 5.77333 5.99347 6.04522 6.23484 6.52482 6.59348 7.31406 7.70541 8.39079 8.66042 9.01301 9.59700 10.43325 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.006995 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.252396 B = 4001.649659 C = 5147.760020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.089 3.911 3 N -0.396 5.396 4 C -0.384 4.384 5 H 0.102 0.898 6 C 0.098 3.902 7 N -0.816 5.816 8 Si 0.924 3.076 9 H -0.255 1.255 10 H -0.310 1.310 11 H -0.263 1.263 12 C 0.435 3.565 13 O -0.533 6.533 14 C -0.153 4.153 15 C 0.211 3.789 16 F -0.095 7.095 17 C -0.132 4.132 18 C -0.111 4.111 19 C -0.006 4.006 20 C -0.055 4.055 21 N -0.012 5.012 22 O -0.171 6.171 23 O -0.155 6.155 24 C 0.212 3.788 25 F -0.077 7.077 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.284 0.716 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.299 -9.119 -12.780 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.034 4.034 3 N -0.111 5.111 4 C -0.511 4.511 5 H 0.119 0.881 6 C -0.122 4.122 7 N -0.444 5.444 8 Si 0.755 3.245 9 H -0.181 1.181 10 H -0.241 1.241 11 H -0.188 1.188 12 C 0.227 3.773 13 O -0.420 6.420 14 C -0.160 4.160 15 C 0.190 3.810 16 F -0.073 7.073 17 C -0.134 4.134 18 C -0.168 4.168 19 C -0.025 4.025 20 C -0.144 4.144 21 N 0.467 4.533 22 O -0.363 6.363 23 O -0.350 6.350 24 C 0.189 3.811 25 F -0.054 7.054 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.557 -8.062 -12.332 16.559 hybrid contribution 1.169 -0.125 -0.296 1.213 sum -6.388 -8.187 -12.627 16.349 Atomic orbital electron populations 1.22128 0.96032 1.01408 1.02629 1.21776 0.94820 0.85056 1.01728 1.42386 1.54199 1.09555 1.04931 1.19655 1.07952 1.29094 0.94352 0.88097 1.27053 0.98680 0.92395 0.94030 1.68699 1.31393 1.15173 1.29143 0.86069 0.77433 0.80947 0.80072 1.18120 1.24080 1.18781 1.17440 0.91319 0.86878 0.81708 1.90536 1.50177 1.17140 1.84108 1.20648 0.92114 1.01580 1.01628 1.17516 0.82921 0.89344 0.91226 1.91627 1.53490 1.74210 1.87932 1.19840 0.98504 0.99798 0.95250 1.20790 0.92131 1.04340 0.99508 1.20688 0.87751 0.94717 0.99313 1.20311 0.89306 1.06175 0.98573 1.50116 1.02788 0.99005 1.01435 1.96246 1.90708 1.43289 1.06067 1.96374 1.12591 1.69510 1.56501 1.17261 0.83415 0.92994 0.87409 1.91822 1.43928 1.93199 1.76495 0.91235 0.93314 0.92312 0.93181 0.89682 0.90425 0.89624 0.89996 0.89845 0.80830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.18 37.16 0.38 -2.08 16 2 C 0.09 1.60 6.00 -4.04 -0.02 1.58 16 3 N -0.40 -9.23 2.23 -114.50 -0.25 -9.48 16 4 C -0.38 -10.31 9.91 -13.45 -0.13 -10.44 16 5 H 0.10 2.78 8.06 -52.49 -0.42 2.36 16 6 C 0.10 2.79 5.12 -15.16 -0.08 2.71 16 7 N -0.82 -23.46 13.88 56.00 0.78 -22.69 16 8 Si 0.92 24.36 24.43 -169.99 -4.15 20.20 16 9 H -0.25 -7.13 6.36 56.52 0.36 -6.77 16 10 H -0.31 -7.96 7.11 56.52 0.40 -7.55 16 11 H -0.26 -6.67 4.99 56.52 0.28 -6.39 16 12 C 0.44 10.31 4.55 -12.54 -0.06 10.26 16 13 O -0.53 -14.82 11.93 5.36 0.06 -14.76 16 14 C -0.15 -2.86 3.83 -104.86 -0.40 -3.26 16 15 C 0.21 3.11 6.83 -38.94 -0.27 2.84 16 16 F -0.09 -1.47 14.99 2.25 0.03 -1.43 16 17 C -0.13 -1.39 5.88 -104.61 -0.62 -2.01 16 18 C -0.11 -0.74 9.82 36.00 0.35 -0.39 16 19 C -0.01 -0.06 9.22 -39.52 -0.36 -0.42 16 20 C -0.06 -0.82 6.88 -79.93 -0.55 -1.37 16 21 N -0.01 -0.20 4.98 33.97 0.17 -0.03 16 22 O -0.17 -2.62 19.14 -31.57 -0.60 -3.22 16 23 O -0.16 -2.89 18.06 -31.57 -0.57 -3.46 16 24 C 0.21 3.80 6.85 -38.93 -0.27 3.53 16 25 F -0.08 -1.61 12.95 2.25 0.03 -1.58 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.71 6.63 -51.93 -0.34 0.37 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.81 6.35 -51.93 -0.33 0.48 16 30 H 0.08 1.46 8.08 -51.93 -0.42 1.05 16 31 H 0.28 7.61 8.26 -40.82 -0.34 7.27 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.57 7.64 -51.93 -0.40 0.17 16 34 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.17 1.31 7.56 -52.49 -0.40 0.92 16 LS Contribution 311.20 15.07 4.69 4.69 Total: -1.00 -32.79 311.20 -5.14 -37.92 By element: Atomic # 1 Polarization: -3.83 SS G_CDS: -3.29 Total: -7.12 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -2.02 Total: 0.95 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.69 Total: -32.20 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.11 Total: -21.44 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.06 Total: -3.01 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -4.15 Total: 20.20 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.79 -5.14 -37.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312831099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.707 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds