Wall clock time and date at job start Tue Mar 31 2020 10:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.46954 * 2 1 4 4 C 1.33311 * 120.00195 * 83.90584 * 3 2 1 5 5 H 1.08001 * 120.00038 * 319.81070 * 4 3 2 6 6 C 1.46792 * 120.00165 * 139.80668 * 4 3 2 7 7 N 1.29308 * 120.00262 * 164.59562 * 6 4 3 8 8 Si 1.86806 * 119.99949 * 344.60112 * 6 4 3 9 9 H 1.48495 * 109.46952 * 96.12968 * 8 6 4 10 10 H 1.48497 * 109.47088 * 216.13183 * 8 6 4 11 11 H 1.48507 * 109.46843 * 336.13326 * 8 6 4 12 12 C 1.34782 * 119.99847 * 264.17725 * 3 2 1 13 13 O 1.21508 * 119.99855 * 179.72186 * 12 3 2 14 14 C 1.47372 * 120.00040 * 359.73334 * 12 3 2 15 15 C 1.40022 * 120.20372 * 89.72070 * 14 12 3 16 16 F 1.35108 * 120.09915 * 359.97438 * 15 14 12 17 17 C 1.38175 * 119.79838 * 179.72041 * 15 14 12 18 18 C 1.50697 * 119.90307 * 180.29461 * 17 15 14 19 19 C 1.38343 * 120.19569 * 0.55866 * 17 15 14 20 20 C 1.38302 * 120.40972 * 359.71163 * 19 17 15 21 21 N 1.48012 * 119.90217 * 180.02562 * 20 19 17 22 22 O 1.31698 * 120.00375 * 359.97438 * 21 20 19 23 23 O 1.31704 * 119.99812 * 179.97438 * 21 20 19 24 24 C 1.38220 * 120.19634 * 0.02562 * 20 19 17 25 25 F 1.35098 * 120.10058 * 180.02562 * 24 20 19 26 26 H 1.08994 * 109.47468 * 306.09191 * 1 2 3 27 27 H 1.09001 * 109.47076 * 66.09081 * 1 2 3 28 28 H 1.09001 * 109.47289 * 186.08636 * 1 2 3 29 29 H 1.09005 * 109.47290 * 239.99782 * 2 1 3 30 30 H 1.08995 * 109.47018 * 119.99769 * 2 1 3 31 31 H 0.96996 * 120.00340 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47349 * 270.26315 * 18 17 15 33 33 H 1.09006 * 109.47010 * 30.25472 * 18 17 15 34 34 H 1.08998 * 109.47464 * 150.25895 * 18 17 15 35 35 H 1.08001 * 119.79673 * 179.69901 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1249 2.0506 1.1480 5 1 1.3602 1.9510 1.9042 6 6 3.2816 2.9229 1.3843 7 7 3.2516 3.7912 2.3420 8 14 4.7970 2.7786 0.3015 9 1 4.7308 3.7937 -0.7803 10 1 6.0143 3.0067 1.1207 11 1 4.8502 1.4204 -0.2969 12 6 2.3545 1.9771 -1.1612 13 8 2.7547 3.1244 -1.1618 14 6 2.2366 1.2372 -2.4303 15 6 1.0418 1.2754 -3.1595 16 9 -0.0088 1.9911 -2.7018 17 6 0.9423 0.5833 -4.3513 18 6 -0.3401 0.6282 -5.1414 19 6 2.0148 -0.1552 -4.8187 20 6 3.1969 -0.2033 -4.1023 21 7 4.3374 -0.9965 -4.6131 22 8 4.2255 -1.6555 -5.7478 23 8 5.4641 -1.0432 -3.9328 24 6 3.3164 0.4871 -2.9109 25 9 4.4721 0.4392 -2.2130 26 1 -0.3634 0.6053 0.8304 27 1 -0.3633 0.4165 -0.9395 28 1 -0.3634 -1.0219 0.1090 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.0158 4.3679 2.4979 32 1 -0.9931 -0.1836 -4.8207 33 1 -0.8379 1.5831 -4.9722 34 1 -0.1172 0.5176 -6.2026 35 1 1.9283 -0.6976 -5.7485 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312831099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:09 Heat of formation + Delta-G solvation = -67.486269 kcal Electronic energy + Delta-G solvation = -27581.382046 eV Core-core repulsion = 23220.670324 eV Total energy + Delta-G solvation = -4360.711723 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.81130 -50.62641 -41.70476 -40.79997 -39.42212 -37.09449 -35.76422 -34.86296 -34.16250 -33.18214 -31.61449 -28.42537 -27.82584 -27.47380 -25.22480 -23.97837 -23.15963 -21.81044 -20.28546 -19.94566 -19.64370 -19.17695 -18.62053 -18.09472 -17.95996 -17.32088 -17.19057 -16.88785 -16.79968 -16.26330 -16.07085 -15.65207 -15.04625 -14.92765 -14.68543 -14.47990 -14.40657 -14.34270 -13.99501 -13.44587 -13.16442 -13.06114 -12.99231 -12.80010 -12.77485 -12.43656 -12.38269 -12.14247 -12.05041 -11.96772 -11.06445 -11.00227 -10.67476 -10.30913 -9.96826 -8.67961 -6.19833 -2.14814 -0.89735 -0.53576 -0.36974 0.96454 1.27693 1.36576 1.42878 1.58030 1.91682 2.20371 2.33453 2.45626 2.76238 2.86717 3.03183 3.26075 3.46690 3.80550 3.91683 3.98033 4.03687 4.22116 4.29034 4.31428 4.45286 4.78733 4.78916 4.82533 4.88775 4.89825 5.25900 5.27781 5.29631 5.33245 5.70469 6.35910 6.69454 7.01956 7.66208 8.32363 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.006995 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.252396 B = 4001.649659 C = 5147.760020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.083 3.917 3 N -0.411 5.411 4 C -0.391 4.391 5 H 0.085 0.915 6 C 0.062 3.938 7 N -0.852 5.852 8 Si 0.959 3.041 9 H -0.285 1.285 10 H -0.304 1.304 11 H -0.255 1.255 12 C 0.444 3.556 13 O -0.584 6.584 14 C -0.182 4.182 15 C 0.211 3.789 16 F -0.101 7.101 17 C -0.095 4.095 18 C -0.114 4.114 19 C 0.032 3.968 20 C -0.053 4.053 21 N -0.014 5.014 22 O -0.092 6.092 23 O -0.250 6.250 24 C 0.186 3.814 25 F -0.107 7.107 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.287 0.713 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 -12.047 -17.326 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.039 4.039 3 N -0.126 5.126 4 C -0.519 4.519 5 H 0.103 0.897 6 C -0.153 4.153 7 N -0.483 5.483 8 Si 0.791 3.209 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.180 1.180 12 C 0.236 3.764 13 O -0.474 6.474 14 C -0.188 4.188 15 C 0.190 3.810 16 F -0.079 7.079 17 C -0.098 4.098 18 C -0.170 4.170 19 C 0.013 3.987 20 C -0.141 4.141 21 N 0.465 4.535 22 O -0.309 6.309 23 O -0.420 6.420 24 C 0.164 3.836 25 F -0.085 7.085 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.098 0.902 34 H 0.138 0.862 35 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -10.172 -10.963 -16.648 22.379 hybrid contribution 1.710 0.635 0.675 1.945 sum -8.462 -10.328 -15.973 20.818 Atomic orbital electron populations 1.22058 0.93425 1.03648 1.02026 1.22025 0.96872 0.82129 1.02871 1.42635 1.54408 1.11510 1.03998 1.19517 1.07248 1.29657 0.95473 0.89738 1.27510 1.00251 0.92903 0.94654 1.68739 1.32196 1.16677 1.30672 0.85511 0.76661 0.80303 0.78448 1.21345 1.23385 1.17966 1.18083 0.88292 0.86564 0.83492 1.90484 1.51647 1.19640 1.85603 1.20136 0.94589 1.03712 1.00404 1.17756 0.81442 0.89702 0.92097 1.91621 1.53446 1.74549 1.88266 1.20308 1.00046 0.96543 0.92859 1.21080 0.89763 1.05310 1.00825 1.21391 0.85099 0.92638 0.99523 1.20435 0.89990 1.05779 0.97920 1.50236 1.03068 0.98895 1.01267 1.96187 1.90016 1.39921 1.04762 1.96436 1.13839 1.73580 1.58150 1.17374 0.82431 0.94841 0.88936 1.91733 1.45547 1.93722 1.77512 0.93360 0.92750 0.88168 0.91127 0.89502 0.90173 0.86980 0.90180 0.86204 0.75610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 10.18 71.98 0.73 -3.61 16 2 C 0.08 2.93 6.00 86.38 0.52 3.45 16 3 N -0.41 -19.69 2.23 -634.45 -1.41 -21.10 16 4 C -0.39 -22.05 9.91 86.71 0.86 -21.19 16 5 H 0.09 4.94 8.06 -2.91 -0.02 4.91 16 6 C 0.06 3.73 5.12 87.30 0.45 4.18 16 7 N -0.85 -51.73 13.88 23.26 0.32 -51.41 16 8 Si 0.96 53.12 24.43 68.60 1.68 54.79 16 9 H -0.29 -17.03 6.36 99.48 0.63 -16.40 16 10 H -0.30 -16.08 7.11 99.48 0.71 -15.37 16 11 H -0.26 -13.60 4.99 99.48 0.50 -13.10 16 12 C 0.44 21.62 4.55 86.65 0.39 22.02 16 13 O -0.58 -34.09 11.93 -3.74 -0.04 -34.14 16 14 C -0.18 -6.66 3.83 -20.02 -0.08 -6.74 16 15 C 0.21 5.58 6.83 22.69 0.15 5.74 16 16 F -0.10 -2.90 14.99 44.97 0.67 -2.22 16 17 C -0.10 -1.44 5.88 -19.86 -0.12 -1.56 16 18 C -0.11 -0.65 9.82 71.23 0.70 0.05 16 19 C 0.03 0.47 9.22 22.31 0.21 0.67 16 20 C -0.05 -1.39 6.88 36.39 0.25 -1.14 16 21 N -0.01 -0.40 4.98 -46.44 -0.23 -0.64 16 22 O -0.09 -2.28 19.14 3.52 0.07 -2.21 16 23 O -0.25 -9.50 18.06 3.51 0.06 -9.44 16 24 C 0.19 6.57 6.85 22.69 0.16 6.73 16 25 F -0.11 -4.67 12.95 44.97 0.58 -4.09 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.45 6.63 -2.39 -0.02 1.44 16 28 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.07 2.20 6.35 -2.38 -0.02 2.19 16 30 H 0.09 3.00 8.08 -2.39 -0.02 2.98 16 31 H 0.29 16.27 8.26 -92.71 -0.77 15.51 16 32 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.08 0.62 7.64 -2.38 -0.02 0.60 16 34 H 0.12 -0.02 8.08 -2.39 -0.02 -0.04 16 35 H 0.23 1.13 7.56 -2.91 -0.02 1.11 16 Total: -1.00 -81.08 311.20 6.80 -74.28 By element: Atomic # 1 Polarization: -13.30 SS G_CDS: 0.88 Total: -12.42 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 4.22 Total: 8.60 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -1.32 Total: -73.15 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: 0.09 Total: -45.79 kcal Atomic # 9 Polarization: -7.57 SS G_CDS: 1.26 Total: -6.31 kcal Atomic # 14 Polarization: 53.12 SS G_CDS: 1.68 Total: 54.79 kcal Total: -81.08 6.80 -74.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312831099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.796 kcal (2) G-P(sol) polarization free energy of solvation -81.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds