Wall clock time and date at job start Tue Mar 31 2020 11:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99668 * 2 1 4 4 H 1.48501 * 109.47024 * 271.31167 * 3 2 1 5 5 H 1.48499 * 109.47192 * 31.31169 * 3 2 1 6 6 H 1.48498 * 109.47455 * 151.31398 * 3 2 1 7 7 C 1.37873 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00084 * 358.81998 * 7 2 1 9 9 C 1.50700 * 120.00375 * 178.81835 * 7 2 1 10 10 C 1.53003 * 115.55132 * 87.42221 * 9 7 2 11 11 N 1.46505 * 109.46663 * 56.04969 * 10 9 7 12 12 C 1.34779 * 119.99717 * 185.06533 * 11 10 9 13 13 O 1.21516 * 119.99948 * 4.99863 * 12 11 10 14 14 C 1.48148 * 119.99784 * 184.99773 * 12 11 10 15 15 C 1.39835 * 120.92322 * 354.96367 * 14 12 11 16 16 C 1.38130 * 119.00297 * 180.25030 * 15 14 12 17 17 N 1.31828 * 120.89413 * 0.02562 * 16 15 14 18 18 C 1.31792 * 122.05281 * 359.97438 * 17 16 15 19 19 C 1.38172 * 120.89729 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.50482 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47157 * 0.02562 * 20 19 18 22 22 F 1.39900 * 109.47404 * 120.02244 * 20 19 18 23 23 F 1.39902 * 109.47312 * 240.02106 * 20 19 18 24 24 C 1.52999 * 117.50156 * 233.10103 * 9 7 2 25 25 C 1.53004 * 117.49570 * 301.75765 * 9 7 2 26 26 H 0.96999 * 120.00846 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47221 * 296.05336 * 10 9 7 28 28 H 1.08995 * 109.47014 * 176.05289 * 10 9 7 29 29 H 0.96993 * 119.99932 * 5.07360 * 11 10 9 30 30 H 1.07996 * 120.49712 * 0.24705 * 15 14 12 31 31 H 1.07999 * 119.54956 * 180.02562 * 16 15 14 32 32 H 1.08001 * 119.55568 * 179.97438 * 18 17 16 33 33 H 1.08999 * 117.49514 * 215.00216 * 24 9 7 34 34 H 1.08999 * 117.49475 * 0.02562 * 24 9 7 35 35 H 1.08997 * 117.50147 * 359.97438 * 25 9 7 36 36 H 1.08999 * 117.49346 * 144.96980 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4688 2.0625 -1.3997 5 1 1.4606 2.6445 0.7276 6 1 3.5602 1.4325 0.6720 7 6 2.0046 -1.1940 0.0005 8 1 1.4648 -2.1293 0.0202 9 6 3.5114 -1.1941 -0.0264 10 6 4.1958 -1.1172 1.3399 11 7 3.7253 -2.2181 2.1843 12 6 4.1161 -2.2942 3.4719 13 8 4.7838 -1.4028 3.9579 14 6 3.7314 -3.4645 4.2948 15 6 2.8777 -4.4496 3.7885 16 6 2.5408 -5.5214 4.5921 17 7 3.0120 -5.6218 5.8192 18 6 3.8188 -4.7162 6.3349 19 6 4.2080 -3.6123 5.6008 20 6 5.1313 -2.5825 6.1991 21 9 5.4624 -2.9562 7.5059 22 9 6.2963 -2.4972 5.4292 23 9 4.4925 -1.3380 6.2175 24 6 4.1985 -2.0206 -1.1153 25 6 4.1970 -0.4923 -1.2004 26 1 -0.4851 0.8400 -0.0004 27 1 3.9538 -0.1663 1.8145 28 1 5.2753 -1.1943 1.2103 29 1 3.1328 -2.8923 1.8166 30 1 2.4877 -4.3734 2.7843 31 1 1.8825 -6.2875 4.2098 32 1 4.1807 -4.8386 7.3451 33 1 5.1380 -2.5097 -0.8582 34 1 3.5606 -2.5639 -1.8124 35 1 3.5582 -0.0309 -1.9535 36 1 5.1354 0.0245 -0.9993 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337642585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:56 Heat of formation + Delta-G solvation = -116.092931 kcal Electronic energy + Delta-G solvation = -26586.917236 eV Core-core repulsion = 22236.470560 eV Total energy + Delta-G solvation = -4350.446676 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.94384 -47.53234 -47.25956 -40.84260 -39.03922 -37.17586 -33.96315 -33.23448 -32.24499 -32.04796 -27.46271 -26.26277 -25.48715 -24.45999 -22.63670 -21.85022 -20.60802 -19.57624 -18.69560 -18.23655 -18.21373 -17.57362 -16.76314 -16.37173 -15.51078 -15.35288 -15.17019 -14.93265 -14.75946 -14.22689 -14.15586 -14.03275 -13.94638 -13.74897 -13.47681 -13.45655 -13.07999 -12.97184 -12.91703 -12.58212 -12.26459 -11.87407 -11.25076 -10.86276 -10.60998 -10.36025 -10.29426 -10.27617 -9.81489 -9.72218 -9.63336 -9.30451 -8.79698 -8.70068 -8.47979 -6.26017 -4.32136 0.24210 0.56365 2.65685 2.85047 3.20301 3.23729 3.33579 3.37968 3.48963 3.72268 4.02202 4.08620 4.31465 4.34571 4.49582 4.57051 4.76877 4.85831 4.93030 5.03844 5.24953 5.41549 5.54173 5.57958 5.88893 5.95674 6.07657 6.08426 6.32854 6.35263 6.60075 6.78101 6.90135 6.97314 7.41284 7.56416 7.81395 8.27845 8.38015 8.71891 9.37022 10.84790 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.017159 B = 0.004430 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.408911 B = 6319.350043 C = 6770.962077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.083 3.917 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.495 4.495 8 H 0.078 0.922 9 C -0.019 4.019 10 C 0.153 3.847 11 N -0.681 5.681 12 C 0.536 3.464 13 O -0.524 6.524 14 C -0.027 4.027 15 C -0.141 4.141 16 C 0.128 3.872 17 N -0.471 5.471 18 C 0.144 3.856 19 C -0.195 4.195 20 C 0.523 3.477 21 F -0.185 7.185 22 F -0.165 7.165 23 F -0.158 7.158 24 C -0.179 4.179 25 C -0.191 4.191 26 H 0.267 0.733 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.406 0.594 30 H 0.157 0.843 31 H 0.174 0.826 32 H 0.175 0.825 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.580 -10.070 8.923 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.121 4.121 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.532 4.532 8 H 0.096 0.904 9 C -0.020 4.020 10 C 0.030 3.970 11 N -0.330 5.330 12 C 0.320 3.680 13 O -0.402 6.402 14 C -0.039 4.039 15 C -0.161 4.161 16 C -0.028 4.028 17 N -0.180 5.180 18 C -0.013 4.013 19 C -0.200 4.200 20 C 0.468 3.532 21 F -0.167 7.167 22 F -0.146 7.146 23 F -0.139 7.139 24 C -0.216 4.216 25 C -0.229 4.229 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.243 0.757 30 H 0.175 0.825 31 H 0.191 0.809 32 H 0.192 0.808 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.673 -9.979 9.735 15.913 hybrid contribution 0.338 1.576 -0.746 1.776 sum 8.012 -8.403 8.989 14.683 Atomic orbital electron populations 1.69868 1.06383 1.27443 1.49103 1.24959 0.94583 0.99195 0.93377 0.86878 0.80804 0.83298 0.78461 1.20338 1.21965 1.18059 1.20127 0.85885 0.94503 1.52679 0.90363 1.19619 0.95466 1.01113 0.85830 1.21268 0.95682 0.89138 0.90906 1.45690 1.48603 1.29306 1.09430 1.18048 0.81646 0.85637 0.82699 1.90849 1.39187 1.38805 1.71361 1.20427 0.95078 0.95435 0.92915 1.22561 0.97052 0.93926 1.02610 1.23097 0.94999 0.95969 0.88751 1.67765 1.09111 1.27544 1.13554 1.22724 0.91449 0.87331 0.99813 1.21224 1.03377 0.99016 0.96382 1.17684 0.79544 0.80925 0.75048 1.93140 1.93240 1.91415 1.38904 1.93231 1.50058 1.96354 1.74976 1.93274 1.81320 1.43293 1.96013 1.22889 1.01029 0.93075 1.04581 1.22940 1.01442 0.95017 1.03463 0.92351 0.91025 0.93304 0.75748 0.82513 0.80885 0.80846 0.90823 0.89296 0.89046 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.96 55.43 0.77 -24.67 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 20.83 24.91 -169.99 -4.23 16.60 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -5.84 5.59 56.52 0.32 -5.53 16 7 C -0.49 -12.23 8.88 -34.44 -0.31 -12.54 16 8 H 0.08 2.06 8.06 -52.48 -0.42 1.63 16 9 C -0.02 -0.39 0.93 -155.66 -0.14 -0.54 16 10 C 0.15 3.03 5.34 -4.04 -0.02 3.01 16 11 N -0.68 -11.94 5.32 -61.15 -0.33 -12.27 16 12 C 0.54 9.43 7.61 -12.19 -0.09 9.34 16 13 O -0.52 -10.73 11.60 5.35 0.06 -10.66 16 14 C -0.03 -0.39 5.88 -104.65 -0.62 -1.00 16 15 C -0.14 -1.57 9.62 -39.02 -0.38 -1.94 16 16 C 0.13 1.24 11.17 -17.59 -0.20 1.04 16 17 N -0.47 -5.25 10.33 -13.30 -0.14 -5.39 16 18 C 0.14 1.62 10.59 -17.59 -0.19 1.43 16 19 C -0.20 -2.65 5.41 -104.06 -0.56 -3.21 16 20 C 0.52 7.81 2.78 36.00 0.10 7.91 16 21 F -0.19 -2.35 16.01 2.25 0.04 -2.31 16 22 F -0.17 -2.72 15.33 2.25 0.03 -2.68 16 23 F -0.16 -2.75 14.94 2.25 0.03 -2.72 16 24 C -0.18 -3.19 9.93 -26.70 -0.27 -3.45 16 25 C -0.19 -3.71 7.59 -26.69 -0.20 -3.91 16 26 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 27 H 0.07 1.60 6.44 -51.93 -0.33 1.26 16 28 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 29 H 0.41 6.39 6.34 -40.82 -0.26 6.13 16 30 H 0.16 1.48 6.55 -52.49 -0.34 1.13 16 31 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.17 1.51 7.17 -52.49 -0.38 1.14 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.09 1.88 7.21 -51.93 -0.37 1.50 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 314.07 15.07 4.73 4.73 Total: -1.00 -30.36 314.07 -5.43 -35.79 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.44 Total: 5.35 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.97 Total: -1.76 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.31 Total: -42.32 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.06 Total: -10.66 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 0.10 Total: -7.72 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.23 Total: 16.60 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.36 -5.43 -35.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337642585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.304 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds