Wall clock time and date at job start Tue Mar 31 2020 11:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99668 * 2 1 4 4 H 1.48501 * 109.47024 * 271.31167 * 3 2 1 5 5 H 1.48499 * 109.47192 * 31.31169 * 3 2 1 6 6 H 1.48498 * 109.47455 * 151.31398 * 3 2 1 7 7 C 1.37873 * 120.00445 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00084 * 358.81998 * 7 2 1 9 9 C 1.50700 * 120.00375 * 178.81835 * 7 2 1 10 10 C 1.53003 * 115.55132 * 87.42221 * 9 7 2 11 11 N 1.46505 * 109.46663 * 56.04969 * 10 9 7 12 12 C 1.34779 * 119.99717 * 185.06533 * 11 10 9 13 13 O 1.21516 * 119.99948 * 4.99863 * 12 11 10 14 14 C 1.48148 * 119.99784 * 184.99773 * 12 11 10 15 15 C 1.39835 * 120.92322 * 354.96367 * 14 12 11 16 16 C 1.38130 * 119.00297 * 180.25030 * 15 14 12 17 17 N 1.31828 * 120.89413 * 0.02562 * 16 15 14 18 18 C 1.31792 * 122.05281 * 359.97438 * 17 16 15 19 19 C 1.38172 * 120.89729 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.50482 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47157 * 0.02562 * 20 19 18 22 22 F 1.39900 * 109.47404 * 120.02244 * 20 19 18 23 23 F 1.39902 * 109.47312 * 240.02106 * 20 19 18 24 24 C 1.52999 * 117.50156 * 233.10103 * 9 7 2 25 25 C 1.53004 * 117.49570 * 301.75765 * 9 7 2 26 26 H 0.96999 * 120.00846 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47221 * 296.05336 * 10 9 7 28 28 H 1.08995 * 109.47014 * 176.05289 * 10 9 7 29 29 H 0.96993 * 119.99932 * 5.07360 * 11 10 9 30 30 H 1.07996 * 120.49712 * 0.24705 * 15 14 12 31 31 H 1.07999 * 119.54956 * 180.02562 * 16 15 14 32 32 H 1.08001 * 119.55568 * 179.97438 * 18 17 16 33 33 H 1.08999 * 117.49514 * 215.00216 * 24 9 7 34 34 H 1.08999 * 117.49475 * 0.02562 * 24 9 7 35 35 H 1.08997 * 117.50147 * 359.97438 * 25 9 7 36 36 H 1.08999 * 117.49346 * 144.96980 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4688 2.0625 -1.3997 5 1 1.4606 2.6445 0.7276 6 1 3.5602 1.4325 0.6720 7 6 2.0046 -1.1940 0.0005 8 1 1.4648 -2.1293 0.0202 9 6 3.5114 -1.1941 -0.0264 10 6 4.1958 -1.1172 1.3399 11 7 3.7253 -2.2181 2.1843 12 6 4.1161 -2.2942 3.4719 13 8 4.7838 -1.4028 3.9579 14 6 3.7314 -3.4645 4.2948 15 6 2.8777 -4.4496 3.7885 16 6 2.5408 -5.5214 4.5921 17 7 3.0120 -5.6218 5.8192 18 6 3.8188 -4.7162 6.3349 19 6 4.2080 -3.6123 5.6008 20 6 5.1313 -2.5825 6.1991 21 9 5.4624 -2.9562 7.5059 22 9 6.2963 -2.4972 5.4292 23 9 4.4925 -1.3380 6.2175 24 6 4.1985 -2.0206 -1.1153 25 6 4.1970 -0.4923 -1.2004 26 1 -0.4851 0.8400 -0.0004 27 1 3.9538 -0.1663 1.8145 28 1 5.2753 -1.1943 1.2103 29 1 3.1328 -2.8923 1.8166 30 1 2.4877 -4.3734 2.7843 31 1 1.8825 -6.2875 4.2098 32 1 4.1807 -4.8386 7.3451 33 1 5.1380 -2.5097 -0.8582 34 1 3.5606 -2.5639 -1.8124 35 1 3.5582 -0.0309 -1.9535 36 1 5.1354 0.0245 -0.9993 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337642585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:53 Heat of formation + Delta-G solvation = -136.156917 kcal Electronic energy + Delta-G solvation = -26587.787276 eV Core-core repulsion = 22236.470560 eV Total energy + Delta-G solvation = -4351.316716 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -51.10719 -48.66453 -48.50714 -41.87293 -40.32293 -38.74047 -35.37533 -34.28390 -34.18971 -33.02025 -28.85460 -27.69472 -27.01781 -25.58565 -23.65886 -23.35123 -21.88373 -21.18234 -19.90196 -19.42393 -19.39149 -18.79272 -18.24415 -17.67333 -16.98708 -16.61286 -16.50991 -16.27735 -15.81660 -15.43805 -15.39173 -15.29558 -15.07073 -14.96758 -14.78136 -14.76690 -14.69617 -14.36830 -14.27249 -13.95213 -13.84469 -13.11278 -12.88748 -12.65302 -12.20208 -12.00494 -11.65811 -11.49575 -11.31782 -11.00069 -10.80954 -10.65999 -10.58774 -10.39471 -9.98629 -8.31120 -6.36740 -0.76707 -0.31728 1.31529 1.39481 1.47029 1.56033 1.68093 1.94947 2.34821 2.47009 2.64466 2.97735 3.04611 3.16381 3.26403 3.40246 3.41789 3.52544 3.84283 3.96771 4.05090 4.34988 4.39309 4.45054 4.47157 4.50839 4.68612 4.79735 4.88228 5.09807 5.24347 5.26668 5.39953 5.50137 5.68898 6.27094 6.44670 6.55982 6.72179 7.03321 7.34581 8.82643 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.017159 B = 0.004430 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.408911 B = 6319.350043 C = 6770.962077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.031 3.969 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.307 1.307 6 H -0.243 1.243 7 C -0.475 4.475 8 H 0.055 0.945 9 C -0.043 4.043 10 C 0.162 3.838 11 N -0.680 5.680 12 C 0.533 3.467 13 O -0.559 6.559 14 C -0.049 4.049 15 C -0.134 4.134 16 C 0.143 3.857 17 N -0.476 5.476 18 C 0.152 3.848 19 C -0.208 4.208 20 C 0.520 3.480 21 F -0.173 7.173 22 F -0.178 7.178 23 F -0.178 7.178 24 C -0.148 4.148 25 C -0.195 4.195 26 H 0.263 0.737 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.414 0.586 30 H 0.173 0.827 31 H 0.215 0.785 32 H 0.197 0.803 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.650 -12.082 8.922 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.167 4.167 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.235 1.235 6 H -0.166 1.166 7 C -0.513 4.513 8 H 0.073 0.927 9 C -0.044 4.044 10 C 0.038 3.962 11 N -0.330 5.330 12 C 0.319 3.681 13 O -0.439 6.439 14 C -0.060 4.060 15 C -0.154 4.154 16 C -0.014 4.014 17 N -0.184 5.184 18 C -0.004 4.004 19 C -0.213 4.213 20 C 0.465 3.535 21 F -0.154 7.154 22 F -0.159 7.159 23 F -0.159 7.159 24 C -0.185 4.185 25 C -0.232 4.232 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.252 0.748 30 H 0.190 0.810 31 H 0.232 0.768 32 H 0.214 0.786 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.768 -12.018 9.729 17.775 hybrid contribution -0.010 2.068 -0.725 2.192 sum 8.758 -9.950 9.004 16.024 Atomic orbital electron populations 1.69985 1.07861 1.27752 1.52309 1.25608 0.94988 1.02066 0.94068 0.86184 0.80213 0.80135 0.78771 1.19302 1.23491 1.16607 1.20333 0.88211 0.93050 1.49687 0.92687 1.19481 0.93256 1.04553 0.87136 1.21014 0.96471 0.88588 0.90130 1.45622 1.48886 1.28966 1.09539 1.18536 0.80759 0.86195 0.82621 1.90825 1.40691 1.40384 1.71970 1.20249 0.97267 0.95375 0.93123 1.22791 0.95877 0.93309 1.03467 1.23758 0.93998 0.95821 0.87789 1.67899 1.09033 1.27262 1.14214 1.23060 0.90709 0.86204 1.00412 1.21196 1.04003 0.99557 0.96504 1.17896 0.79412 0.80678 0.75534 1.93154 1.93160 1.91163 1.37953 1.93194 1.50843 1.96411 1.75446 1.93226 1.81674 1.44857 1.96152 1.22926 1.01550 0.92227 1.01836 1.23003 1.01813 0.96527 1.01895 0.92763 0.94081 0.91703 0.74805 0.80982 0.76836 0.78609 0.87721 0.89269 0.90385 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.99 13.96 21.45 0.30 -54.69 16 2 C 0.03 1.69 5.47 84.65 0.46 2.15 16 3 Si 0.92 43.10 24.91 68.60 1.71 44.81 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.31 -14.99 7.11 99.48 0.71 -14.29 16 6 H -0.24 -10.72 5.59 99.48 0.56 -10.17 16 7 C -0.48 -23.44 8.88 25.60 0.23 -23.21 16 8 H 0.06 2.91 8.06 -2.91 -0.02 2.89 16 9 C -0.04 -1.71 0.93 -52.93 -0.05 -1.76 16 10 C 0.16 6.21 5.34 86.38 0.46 6.67 16 11 N -0.68 -23.25 5.32 -465.67 -2.48 -25.73 16 12 C 0.53 18.59 7.61 86.88 0.66 19.25 16 13 O -0.56 -23.14 11.60 -3.76 -0.04 -23.18 16 14 C -0.05 -1.34 5.88 -19.88 -0.12 -1.46 16 15 C -0.13 -2.64 9.62 22.63 0.22 -2.42 16 16 C 0.14 2.24 11.17 84.67 0.95 3.18 16 17 N -0.48 -9.05 10.33 -196.01 -2.03 -11.07 16 18 C 0.15 3.07 10.59 84.68 0.90 3.97 16 19 C -0.21 -5.41 5.41 -19.50 -0.11 -5.51 16 20 C 0.52 15.42 2.78 71.23 0.20 15.62 16 21 F -0.17 -4.23 16.01 44.97 0.72 -3.51 16 22 F -0.18 -5.89 15.33 44.97 0.69 -5.20 16 23 F -0.18 -6.33 14.94 44.97 0.67 -5.66 16 24 C -0.15 -4.82 9.93 30.62 0.30 -4.52 16 25 C -0.19 -7.06 7.59 30.62 0.23 -6.83 16 26 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 27 H 0.04 1.82 6.44 -2.39 -0.02 1.81 16 28 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 29 H 0.41 12.51 6.34 -92.71 -0.59 11.92 16 30 H 0.17 2.78 6.55 -2.91 -0.02 2.76 16 31 H 0.22 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.20 2.90 7.17 -2.91 -0.02 2.88 16 33 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.08 3.06 7.21 -2.39 -0.02 3.04 16 36 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -67.23 314.07 4.29 -62.94 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.42 Total: 16.17 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 4.34 Total: 5.12 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -4.20 Total: -91.49 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.04 Total: -23.18 kcal Atomic # 9 Polarization: -16.45 SS G_CDS: 2.08 Total: -14.37 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.71 Total: 44.81 kcal Total: -67.23 4.29 -62.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337642585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.218 kcal (2) G-P(sol) polarization free energy of solvation -67.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds