Wall clock time and date at job start Tue Mar 31 2020 10:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47256 * 2 1 4 4 N 1.31776 * 122.75407 * 89.97321 * 3 2 1 5 5 C 1.29034 * 117.12603 * 180.02562 * 4 3 2 6 6 C 1.50695 * 124.91330 * 179.73408 * 5 4 3 7 7 C 1.53004 * 109.47323 * 90.00141 * 6 5 4 8 8 N 1.46496 * 109.47315 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00245 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99590 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00250 * 179.97438 * 9 8 7 12 12 S 1.80998 * 109.47122 * 180.02562 * 11 9 8 13 13 C 1.76202 * 99.99987 * 180.02562 * 12 11 9 14 14 H 1.08001 * 120.00148 * 359.97438 * 13 12 11 15 15 C 1.38798 * 119.99827 * 179.97438 * 13 12 11 16 16 N 1.31630 * 120.00179 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99826 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46826 * 90.00194 * 17 15 13 19 19 H 1.48501 * 109.47371 * 209.99837 * 17 15 13 20 20 H 1.48500 * 109.47356 * 330.00062 * 17 15 13 21 21 S 1.70972 * 110.16603 * 0.02562 * 5 4 3 22 22 C 1.33639 * 122.74613 * 269.99801 * 3 2 1 23 23 C 1.50702 * 126.04017 * 359.95486 * 22 3 2 24 24 H 1.09001 * 109.46990 * 59.99916 * 1 2 3 25 25 H 1.09002 * 109.47756 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47185 * 300.00464 * 1 2 3 27 27 H 1.08995 * 109.46918 * 239.99471 * 2 1 3 28 28 H 1.09008 * 109.46862 * 119.99755 * 2 1 3 29 29 H 1.09009 * 109.47100 * 209.99885 * 6 5 4 30 30 H 1.08999 * 109.47544 * 329.99881 * 6 5 4 31 31 H 1.09000 * 109.47086 * 299.99887 * 7 6 5 32 32 H 1.08999 * 109.47023 * 59.99421 * 7 6 5 33 33 H 0.97003 * 120.00004 * 359.97438 * 8 7 6 34 34 H 1.09002 * 109.46727 * 300.00269 * 11 9 8 35 35 H 1.08992 * 109.46948 * 60.00043 * 11 9 8 36 36 H 0.97006 * 120.00099 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.47171 * 90.00420 * 23 22 3 38 38 H 1.08995 * 109.47389 * 210.00344 * 23 22 3 39 39 H 1.09001 * 109.46768 * 330.00437 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2695 2.0931 1.1082 5 6 2.6972 3.3039 0.9817 6 6 3.0177 4.2295 2.1269 7 6 4.4866 4.0631 2.5214 8 7 4.7983 4.9634 3.6343 9 6 6.0423 4.9889 4.1523 10 8 6.9037 4.2668 3.6968 11 6 6.3631 5.9154 5.2968 12 16 8.1007 5.7184 5.7636 13 6 8.1971 6.8828 7.0825 14 1 7.3241 7.4524 7.3649 15 6 9.3952 7.0681 7.7584 16 7 10.4594 6.3743 7.4139 17 14 9.4976 8.3032 9.1561 18 1 9.1657 7.6294 10.4372 19 1 10.8743 8.8550 9.2293 20 1 8.5341 9.4068 8.9132 21 16 2.8397 3.7087 -0.6733 22 6 2.2733 2.1023 -1.1240 23 6 2.0925 1.5878 -2.5289 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.8380 5.2605 1.8220 30 1 2.3828 3.9867 2.9790 31 1 4.6663 3.0322 2.8263 32 1 5.1214 4.3059 1.6693 33 1 4.1094 5.5411 3.9984 34 1 6.1840 6.9461 4.9908 35 1 5.7279 5.6737 6.1489 36 1 11.2968 6.5041 7.8860 37 1 1.0799 1.8058 -2.8681 38 1 2.8097 2.0751 -3.1894 39 1 2.2572 0.5104 -2.5453 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338365598.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:26 Heat of formation + Delta-G solvation = -16.198055 kcal Electronic energy + Delta-G solvation = -20003.677676 eV Core-core repulsion = 16777.616330 eV Total energy + Delta-G solvation = -3226.061347 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38174 -39.15508 -35.83220 -34.22130 -32.42076 -32.07374 -31.38849 -29.08252 -26.63342 -25.48755 -24.59669 -23.92153 -21.83009 -20.41900 -19.14398 -18.23104 -17.80307 -16.33997 -16.17949 -15.59520 -15.48643 -15.01729 -14.79474 -14.42438 -14.32653 -14.01789 -13.74865 -13.46289 -13.41542 -13.12663 -12.99972 -12.67462 -12.51623 -12.27895 -12.13456 -11.97232 -11.50954 -11.36505 -11.16254 -11.05593 -11.01668 -10.75866 -9.89862 -9.81029 -9.49580 -9.43040 -9.06434 -8.92506 -8.88525 -8.22669 -6.49191 -6.20777 -3.91384 0.37429 1.02103 1.43665 2.45693 3.01193 3.09736 3.23109 3.27973 3.31757 3.59781 3.88692 4.21152 4.47221 4.59940 4.63796 4.69181 4.75773 4.85225 4.95008 5.06605 5.12098 5.14328 5.17768 5.27228 5.37256 5.42921 5.53154 5.61737 5.65612 5.76746 5.79026 5.88057 5.90510 5.99338 6.14468 6.55686 7.48390 7.60325 7.67910 8.36035 8.60249 9.24442 10.86619 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.038011 B = 0.001977 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.448732 B =14156.552257 C =14265.102895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C 0.066 3.934 4 N -0.461 5.461 5 C 0.053 3.947 6 C -0.054 4.054 7 C 0.130 3.870 8 N -0.739 5.739 9 C 0.532 3.468 10 O -0.516 6.516 11 C -0.153 4.153 12 S -0.061 6.061 13 C -0.535 4.535 14 H 0.073 0.927 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 S 0.124 5.876 22 C -0.227 4.227 23 C -0.074 4.074 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.268 0.732 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.510 -7.673 -18.822 30.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C -0.066 4.066 4 N -0.175 5.175 5 C -0.225 4.225 6 C -0.096 4.096 7 C 0.004 3.996 8 N -0.394 5.394 9 C 0.318 3.682 10 O -0.390 6.390 11 C -0.303 4.303 12 S 0.166 5.834 13 C -0.683 4.683 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 S 0.380 5.620 22 C -0.348 4.348 23 C -0.133 4.133 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.233 0.767 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.617 -8.210 -19.567 29.586 hybrid contribution -1.530 1.115 1.647 2.509 sum -22.147 -7.095 -17.920 29.359 Atomic orbital electron populations 1.21700 0.94290 1.01962 1.02215 1.20135 0.96184 0.89186 1.03467 1.20132 1.01857 0.98502 0.86144 1.66098 1.14266 1.05476 1.31641 1.26551 1.02994 0.95149 0.97816 1.20426 0.97631 0.96857 0.94650 1.21166 0.92948 0.95341 0.90177 1.45936 1.12697 1.44142 1.36649 1.20323 0.81288 0.83095 0.83456 1.90713 1.46325 1.41330 1.60589 1.23527 1.07646 1.00909 0.98260 1.85420 0.99854 1.55009 1.43121 1.22867 0.99488 1.26219 1.19773 0.90899 1.25000 0.94704 0.96453 0.97487 1.70021 1.00922 1.39241 1.40092 0.86161 0.77597 0.80485 0.81210 1.20275 1.20763 1.19698 1.84030 1.61590 1.13532 1.02833 1.25721 1.10772 0.97287 1.01041 1.20245 1.02512 1.01535 0.89019 0.92738 0.91946 0.92337 0.90242 0.90009 0.88881 0.87948 0.90870 0.91362 0.76688 0.89130 0.89120 0.92186 0.90608 0.91068 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.89 37.16 0.37 -0.56 16 2 C -0.05 -0.38 6.11 -27.89 -0.17 -0.55 16 3 C 0.07 0.66 5.99 -84.23 -0.50 0.15 16 4 N -0.46 -5.44 10.53 -8.06 -0.08 -5.52 16 5 C 0.05 0.56 6.64 -13.46 -0.09 0.47 16 6 C -0.05 -0.48 5.91 -27.88 -0.16 -0.65 16 7 C 0.13 1.57 5.66 -4.04 -0.02 1.55 16 8 N -0.74 -9.76 5.56 -60.29 -0.33 -10.10 16 9 C 0.53 10.00 7.85 -10.99 -0.09 9.92 16 10 O -0.52 -11.95 15.86 5.55 0.09 -11.86 16 11 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 12 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 13 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 14 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 15 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 17 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 S 0.12 1.10 23.18 -107.50 -2.49 -1.39 16 22 C -0.23 -1.99 6.59 -35.92 -0.24 -2.23 16 23 C -0.07 -0.41 10.10 36.01 0.36 -0.05 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.08 0.46 6.72 -51.93 -0.35 0.11 16 28 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 29 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.40 3.87 8.47 -40.82 -0.35 3.52 16 34 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 35 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.36 6.76 -51.93 -0.35 0.01 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -35.79 361.46 -9.67 -45.45 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.66 Total: -1.26 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -0.12 Total: -7.79 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.31 Total: -41.16 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -4.70 Total: -5.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.79 -9.67 -45.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338365598.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.255 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds