Wall clock time and date at job start Tue Mar 31 2020 10:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48504 * 109.47163 * 240.00189 * 3 2 1 5 5 H 1.48493 * 109.47398 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47268 * 120.00272 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99446 * 197.83802 * 7 2 1 9 9 C 1.41391 * 120.00394 * 17.83971 * 7 2 1 10 10 C 1.40709 * 120.24881 * 204.37955 * 9 7 2 11 11 C 1.37613 * 119.74954 * 180.29949 * 10 9 7 12 12 C 1.38640 * 120.24543 * 359.42165 * 11 10 9 13 13 C 1.50697 * 119.74952 * 180.30058 * 12 11 10 14 14 N 1.46497 * 109.47540 * 270.30040 * 13 12 11 15 15 C 1.36068 * 126.35663 * 264.69120 * 14 13 12 16 16 N 1.30095 * 110.09188 * 179.87584 * 15 14 13 17 17 C 1.35827 * 109.65418 * 0.39151 * 16 15 14 18 18 C 1.39790 * 133.49576 * 179.78802 * 17 16 15 19 19 C 1.37732 * 119.77807 * 179.97438 * 18 17 16 20 20 F 1.35103 * 119.77422 * 179.97438 * 19 18 17 21 21 C 1.39181 * 120.45412 * 359.97438 * 19 18 17 22 22 F 1.35098 * 119.81194 * 180.02562 * 21 19 18 23 23 C 1.37983 * 120.38610 * 0.02562 * 21 19 18 24 24 C 1.38166 * 126.35180 * 85.00061 * 14 13 12 25 25 C 1.38637 * 120.49973 * 0.60778 * 12 11 10 26 26 C 1.37615 * 120.24590 * 359.67285 * 25 12 11 27 27 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 28 28 H 1.08008 * 120.12610 * 0.02845 * 10 9 7 29 29 H 1.07998 * 119.88111 * 179.72526 * 11 10 9 30 30 H 1.09008 * 109.47282 * 30.30451 * 13 12 11 31 31 H 1.09004 * 109.47165 * 150.29782 * 13 12 11 32 32 H 1.08000 * 124.95153 * 0.02844 * 15 14 13 33 33 H 1.07999 * 120.11454 * 359.94891 * 18 17 16 34 34 H 1.08002 * 120.08048 * 180.02562 * 23 21 19 35 35 H 1.08003 * 119.87139 * 179.69780 * 25 12 11 36 36 H 1.08004 * 120.12443 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0491 -1.2346 0.2860 9 6 1.3520 -2.4069 -0.3762 10 6 1.8258 -3.6499 0.0824 11 6 1.1833 -4.8069 -0.2946 12 6 0.0659 -4.7502 -1.1133 13 6 -0.6332 -6.0237 -1.5137 14 7 -0.0438 -6.5354 -2.7534 15 6 -0.5038 -6.3174 -4.0153 16 7 0.2611 -6.9177 -4.8797 17 6 1.2602 -7.5696 -4.2305 18 6 2.3325 -8.3575 -4.6589 19 6 3.1997 -8.8943 -3.7332 20 9 4.2357 -9.6562 -4.1474 21 6 3.0160 -8.6573 -2.3741 22 9 3.8748 -9.1899 -1.4774 23 6 1.9619 -7.8816 -1.9371 24 6 1.0790 -7.3338 -2.8578 25 6 -0.4095 -3.5311 -1.5715 26 6 0.2208 -2.3619 -1.2119 27 1 -0.4850 0.8400 0.0004 28 1 2.6932 -3.6961 0.7243 29 1 1.5478 -5.7624 0.0526 30 1 -0.5180 -6.7655 -0.7233 31 1 -1.6929 -5.8225 -1.6713 32 1 -1.3752 -5.7297 -4.2633 33 1 2.4803 -8.5450 -5.7122 34 1 1.8243 -7.7005 -0.8813 35 1 -1.2779 -3.4991 -2.2129 36 1 -0.1514 -1.4132 -1.5697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342479733.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:52 Heat of formation + Delta-G solvation = -1.887476 kcal Electronic energy + Delta-G solvation = -24529.100868 eV Core-core repulsion = 20614.375737 eV Total energy + Delta-G solvation = -3914.725131 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.36913 -48.44768 -42.09488 -37.94199 -36.78541 -34.75049 -33.45760 -31.00041 -29.76416 -29.53346 -28.90647 -27.08603 -24.24908 -23.65698 -22.26916 -21.45374 -20.84680 -20.13033 -18.08079 -17.70888 -17.55453 -17.21677 -16.33039 -15.80585 -15.65915 -15.32534 -15.07852 -14.88135 -14.39708 -14.15587 -14.08090 -13.90632 -13.77690 -13.42151 -12.91303 -12.74875 -12.21868 -12.03458 -11.84173 -11.73649 -11.37399 -11.22961 -11.11099 -10.90971 -10.68193 -10.34113 -10.00423 -9.83148 -9.62746 -9.34217 -8.23485 -8.14458 -7.72898 -7.61322 -6.99615 -4.59630 0.67491 1.15559 2.26981 2.75372 2.82455 2.86753 2.94975 2.97793 3.14431 3.57052 3.76595 3.78284 4.14995 4.28367 4.42617 4.66307 4.85003 5.06282 5.11805 5.37125 5.40873 5.48816 5.56949 5.70784 5.74920 5.79322 6.03100 6.09210 6.27781 6.40543 6.71087 6.72547 6.84576 7.00927 7.10467 7.18392 7.35341 7.57307 7.79122 7.82108 7.85580 8.05071 8.39781 8.65424 8.72093 9.94001 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.003362 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.982996 B = 8325.455555 C = 8947.604493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.120 3.880 10 C -0.228 4.228 11 C -0.064 4.064 12 C -0.261 4.261 13 C 0.169 3.831 14 N -0.468 5.468 15 C 0.279 3.721 16 N -0.504 5.504 17 C 0.060 3.940 18 C -0.075 4.075 19 C 0.056 3.944 20 F -0.131 7.131 21 C 0.076 3.924 22 F -0.128 7.128 23 C -0.105 4.105 24 C 0.070 3.930 25 C -0.078 4.078 26 C -0.168 4.168 27 H 0.285 0.715 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.215 0.785 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 -10.243 -4.220 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.248 4.248 11 C -0.083 4.083 12 C -0.264 4.264 13 C 0.050 3.950 14 N -0.154 5.154 15 C -0.007 4.007 16 N -0.223 5.223 17 C -0.060 4.060 18 C -0.095 4.095 19 C 0.033 3.967 20 F -0.110 7.110 21 C 0.054 3.946 22 F -0.107 7.107 23 C -0.126 4.126 24 C -0.042 4.042 25 C -0.097 4.097 26 C -0.187 4.187 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.231 0.769 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.106 0.894 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.021 -10.064 -4.913 11.380 hybrid contribution 0.723 0.773 1.120 1.541 sum -1.298 -9.291 -3.793 10.119 Atomic orbital electron populations 1.69799 1.07710 1.29819 1.33456 1.25978 0.94790 1.01631 0.91940 0.86308 0.80210 0.79751 0.80253 1.18595 1.20109 1.18784 1.19694 0.98293 0.91294 1.38984 0.90129 1.17678 0.90768 0.92054 0.87822 1.20965 1.03948 0.92783 1.07111 1.20332 0.94636 0.96425 0.96927 1.18940 1.03373 0.92251 1.11790 1.20629 0.96764 0.95098 0.82491 1.46261 1.21410 1.38687 1.09075 1.25407 0.99130 0.97488 0.78669 1.70474 1.05709 1.14477 1.31629 1.18668 0.96929 1.01182 0.89227 1.19854 0.92515 0.97331 0.99841 1.17030 0.89648 0.99306 0.90674 1.91506 1.55534 1.73288 1.90652 1.16990 0.91866 1.00669 0.85031 1.91516 1.68146 1.84383 1.66631 1.19640 0.93651 0.99160 1.00173 1.18440 0.91947 0.98194 0.95655 1.20464 0.98108 0.92557 0.98591 1.21299 0.99399 0.96815 1.01232 0.90447 0.88764 0.89676 0.89965 0.88987 0.76908 0.83327 0.83787 0.89403 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.86 10.95 55.55 0.61 -18.25 16 2 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.45 -11.37 9.05 -37.74 -0.34 -11.71 16 8 H 0.08 1.95 7.91 -52.48 -0.41 1.53 16 9 C 0.12 2.98 5.57 -106.83 -0.60 2.39 16 10 C -0.23 -5.23 9.80 -38.88 -0.38 -5.61 16 11 C -0.06 -1.29 9.67 -39.66 -0.38 -1.67 16 12 C -0.26 -4.84 5.49 -104.33 -0.57 -5.41 16 13 C 0.17 2.34 6.27 -5.20 -0.03 2.31 16 14 N -0.47 -6.71 2.79 -117.06 -0.33 -7.03 16 15 C 0.28 3.73 12.50 -89.77 -1.12 2.61 16 16 N -0.50 -7.78 11.27 -12.04 -0.14 -7.91 16 17 C 0.06 0.93 7.23 -84.68 -0.61 0.32 16 18 C -0.07 -1.04 10.07 -39.19 -0.39 -1.43 16 19 C 0.06 0.79 7.29 -39.42 -0.29 0.50 16 20 F -0.13 -1.85 17.16 2.25 0.04 -1.81 16 21 C 0.08 1.10 7.30 -39.32 -0.29 0.82 16 22 F -0.13 -1.88 17.17 2.25 0.04 -1.84 16 23 C -0.10 -1.50 10.01 -39.46 -0.40 -1.90 16 24 C 0.07 1.06 6.87 -83.96 -0.58 0.49 16 25 C -0.08 -1.59 9.67 -39.66 -0.38 -1.97 16 26 C -0.17 -4.00 8.70 -38.87 -0.34 -4.34 16 27 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 28 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 29 H 0.09 1.49 7.19 -52.49 -0.38 1.11 16 30 H 0.08 1.03 8.08 -51.92 -0.42 0.61 16 31 H 0.09 1.05 8.07 -51.93 -0.42 0.63 16 32 H 0.21 1.99 8.06 -52.49 -0.42 1.56 16 33 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.14 1.89 7.19 -52.49 -0.38 1.51 16 35 H 0.09 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.12 2.95 6.15 -52.48 -0.32 2.63 16 LS Contribution 325.99 15.07 4.91 4.91 Total: -1.00 -26.98 325.99 -9.84 -36.82 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.16 Total: 5.45 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -6.79 Total: -22.91 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.15 Total: -33.19 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.08 Total: -3.65 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.98 -9.84 -36.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342479733.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.935 kcal (2) G-P(sol) polarization free energy of solvation -26.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds