Wall clock time and date at job start Tue Mar 31 2020 10:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48504 * 109.47163 * 240.00189 * 3 2 1 5 5 H 1.48493 * 109.47398 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47268 * 120.00272 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99446 * 197.83802 * 7 2 1 9 9 C 1.41391 * 120.00394 * 17.83971 * 7 2 1 10 10 C 1.40709 * 120.24881 * 204.37955 * 9 7 2 11 11 C 1.37613 * 119.74954 * 180.29949 * 10 9 7 12 12 C 1.38640 * 120.24543 * 359.42165 * 11 10 9 13 13 C 1.50697 * 119.74952 * 180.30058 * 12 11 10 14 14 N 1.46497 * 109.47540 * 270.30040 * 13 12 11 15 15 C 1.36068 * 126.35663 * 264.69120 * 14 13 12 16 16 N 1.30095 * 110.09188 * 179.87584 * 15 14 13 17 17 C 1.35827 * 109.65418 * 0.39151 * 16 15 14 18 18 C 1.39790 * 133.49576 * 179.78802 * 17 16 15 19 19 C 1.37732 * 119.77807 * 179.97438 * 18 17 16 20 20 F 1.35103 * 119.77422 * 179.97438 * 19 18 17 21 21 C 1.39181 * 120.45412 * 359.97438 * 19 18 17 22 22 F 1.35098 * 119.81194 * 180.02562 * 21 19 18 23 23 C 1.37983 * 120.38610 * 0.02562 * 21 19 18 24 24 C 1.38166 * 126.35180 * 85.00061 * 14 13 12 25 25 C 1.38637 * 120.49973 * 0.60778 * 12 11 10 26 26 C 1.37615 * 120.24590 * 359.67285 * 25 12 11 27 27 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 28 28 H 1.08008 * 120.12610 * 0.02845 * 10 9 7 29 29 H 1.07998 * 119.88111 * 179.72526 * 11 10 9 30 30 H 1.09008 * 109.47282 * 30.30451 * 13 12 11 31 31 H 1.09004 * 109.47165 * 150.29782 * 13 12 11 32 32 H 1.08000 * 124.95153 * 0.02844 * 15 14 13 33 33 H 1.07999 * 120.11454 * 359.94891 * 18 17 16 34 34 H 1.08002 * 120.08048 * 180.02562 * 23 21 19 35 35 H 1.08003 * 119.87139 * 179.69780 * 25 12 11 36 36 H 1.08004 * 120.12443 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0491 -1.2346 0.2860 9 6 1.3520 -2.4069 -0.3762 10 6 1.8258 -3.6499 0.0824 11 6 1.1833 -4.8069 -0.2946 12 6 0.0659 -4.7502 -1.1133 13 6 -0.6332 -6.0237 -1.5137 14 7 -0.0438 -6.5354 -2.7534 15 6 -0.5038 -6.3174 -4.0153 16 7 0.2611 -6.9177 -4.8797 17 6 1.2602 -7.5696 -4.2305 18 6 2.3325 -8.3575 -4.6589 19 6 3.1997 -8.8943 -3.7332 20 9 4.2357 -9.6562 -4.1474 21 6 3.0160 -8.6573 -2.3741 22 9 3.8748 -9.1899 -1.4774 23 6 1.9619 -7.8816 -1.9371 24 6 1.0790 -7.3338 -2.8578 25 6 -0.4095 -3.5311 -1.5715 26 6 0.2208 -2.3619 -1.2119 27 1 -0.4850 0.8400 0.0004 28 1 2.6932 -3.6961 0.7243 29 1 1.5478 -5.7624 0.0526 30 1 -0.5180 -6.7655 -0.7233 31 1 -1.6929 -5.8225 -1.6713 32 1 -1.3752 -5.7297 -4.2633 33 1 2.4803 -8.5450 -5.7122 34 1 1.8243 -7.7005 -0.8813 35 1 -1.2779 -3.4991 -2.2129 36 1 -0.1514 -1.4132 -1.5697 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342479733.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:52 Heat of formation + Delta-G solvation = -12.019439 kcal Electronic energy + Delta-G solvation = -24529.540223 eV Core-core repulsion = 20614.375737 eV Total energy + Delta-G solvation = -3915.164486 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 314.093 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.49360 -49.57358 -43.19076 -39.54915 -37.91294 -36.19973 -34.90730 -32.38509 -31.20491 -31.07012 -30.01269 -28.53829 -25.75456 -24.73930 -23.44453 -23.00948 -22.26821 -21.49155 -19.28938 -19.19035 -18.84919 -18.32201 -17.48355 -17.27040 -16.85712 -16.71923 -16.21038 -16.01068 -15.81951 -15.53192 -15.41651 -15.13848 -15.03554 -14.56783 -14.35350 -14.00307 -13.85442 -13.48481 -13.30490 -13.07487 -12.76645 -12.70161 -12.51796 -12.30510 -12.13169 -11.75740 -11.34252 -11.24017 -11.12251 -11.02768 -9.44213 -9.35213 -9.32715 -9.23121 -8.70734 -6.41099 -0.40334 0.02562 0.77291 1.11625 1.35476 1.41187 1.46964 1.67448 1.81582 2.16758 2.45783 2.64079 2.74111 3.08601 3.21808 3.64773 3.70625 3.80297 3.98928 4.13478 4.17556 4.27557 4.39890 4.46722 4.53858 4.63727 4.69920 4.72971 5.00476 5.07343 5.15847 5.28237 5.34798 5.41272 5.61940 5.64759 5.88831 6.05069 6.11180 6.15122 6.34355 6.65120 6.76728 6.88529 6.97321 8.25182 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.003362 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.982996 B = 8325.455555 C = 8947.604493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.041 3.959 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.264 1.264 6 H -0.261 1.261 7 C -0.501 4.501 8 H 0.071 0.929 9 C 0.086 3.914 10 C -0.252 4.252 11 C -0.069 4.069 12 C -0.239 4.239 13 C 0.174 3.826 14 N -0.471 5.471 15 C 0.287 3.713 16 N -0.528 5.528 17 C 0.044 3.956 18 C -0.073 4.073 19 C 0.053 3.947 20 F -0.133 7.133 21 C 0.069 3.931 22 F -0.132 7.132 23 C -0.105 4.105 24 C 0.055 3.945 25 C -0.078 4.078 26 C -0.195 4.195 27 H 0.291 0.709 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.254 0.746 33 H 0.166 0.834 34 H 0.156 0.844 35 H 0.122 0.878 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.041 -11.331 -4.941 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.176 4.176 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.530 4.530 8 H 0.089 0.911 9 C 0.084 3.916 10 C -0.271 4.271 11 C -0.087 4.087 12 C -0.241 4.241 13 C 0.055 3.945 14 N -0.158 5.158 15 C 0.002 3.998 16 N -0.247 5.247 17 C -0.075 4.075 18 C -0.094 4.094 19 C 0.030 3.970 20 F -0.111 7.111 21 C 0.047 3.953 22 F -0.111 7.111 23 C -0.127 4.127 24 C -0.056 4.056 25 C -0.096 4.096 26 C -0.215 4.215 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.147 0.853 32 H 0.270 0.730 33 H 0.184 0.816 34 H 0.174 0.826 35 H 0.140 0.860 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.375 -11.175 -5.637 12.963 hybrid contribution 1.090 0.869 1.267 1.884 sum -2.285 -10.306 -4.370 11.425 Atomic orbital electron populations 1.69832 1.08769 1.30817 1.34632 1.26672 0.95514 1.04240 0.91149 0.85324 0.78970 0.75978 0.79956 1.18784 1.18766 1.18533 1.19877 0.98325 0.92893 1.41950 0.91103 1.18006 0.91898 0.92845 0.88897 1.21146 1.04593 0.93517 1.07890 1.20695 0.94780 0.96543 0.96730 1.19442 1.01807 0.93991 1.08824 1.20721 0.97908 0.92935 0.82982 1.46130 1.21343 1.38850 1.09447 1.26254 0.99372 0.96381 0.77835 1.70482 1.06324 1.15457 1.32480 1.18941 0.97391 1.01580 0.89638 1.20027 0.91941 0.96706 1.00696 1.17090 0.89738 0.99416 0.90728 1.91502 1.55619 1.73341 1.90661 1.17109 0.92078 1.00990 0.85144 1.91505 1.68304 1.84483 1.66761 1.19737 0.93348 0.98860 1.00718 1.18619 0.92497 0.98733 0.95775 1.20848 0.98589 0.91948 0.98257 1.21299 1.00169 0.97603 1.02400 0.89872 0.89257 0.86924 0.87941 0.85278 0.73000 0.81636 0.82602 0.85969 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.47 10.95 21.83 0.24 -40.23 16 2 C 0.04 1.97 5.14 85.26 0.44 2.41 16 3 Si 0.98 37.05 29.59 68.60 2.03 39.08 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 6 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 7 C -0.50 -26.42 9.05 23.46 0.21 -26.21 16 8 H 0.07 3.66 7.91 -2.91 -0.02 3.64 16 9 C 0.09 4.44 5.57 -21.29 -0.12 4.32 16 10 C -0.25 -11.73 9.80 22.73 0.22 -11.51 16 11 C -0.07 -2.64 9.67 22.22 0.21 -2.43 16 12 C -0.24 -8.10 5.49 -19.67 -0.11 -8.20 16 13 C 0.17 3.95 6.27 85.63 0.54 4.48 16 14 N -0.47 -11.60 2.79 -524.26 -1.46 -13.07 16 15 C 0.29 6.52 12.50 180.05 2.25 8.77 16 16 N -0.53 -14.83 11.27 -191.99 -2.16 -16.99 16 17 C 0.04 1.27 7.23 39.44 0.28 1.55 16 18 C -0.07 -1.91 10.07 22.53 0.23 -1.68 16 19 C 0.05 1.42 7.29 22.38 0.16 1.58 16 20 F -0.13 -3.59 17.16 44.97 0.77 -2.82 16 21 C 0.07 1.88 7.30 22.44 0.16 2.05 16 22 F -0.13 -3.72 17.17 44.97 0.77 -2.95 16 23 C -0.11 -2.78 10.01 22.35 0.22 -2.56 16 24 C 0.06 1.54 6.87 38.83 0.27 1.81 16 25 C -0.08 -2.98 9.67 22.22 0.21 -2.77 16 26 C -0.20 -9.41 8.70 22.73 0.20 -9.21 16 27 H 0.29 13.00 8.30 -92.71 -0.77 12.23 16 28 H 0.09 4.08 8.06 -2.91 -0.02 4.05 16 29 H 0.11 3.64 7.19 -2.91 -0.02 3.62 16 30 H 0.10 2.02 8.08 -2.38 -0.02 2.00 16 31 H 0.13 2.10 8.07 -2.38 -0.02 2.08 16 32 H 0.25 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 34 H 0.16 3.64 7.19 -2.91 -0.02 3.62 16 35 H 0.12 3.79 8.06 -2.91 -0.02 3.76 16 36 H 0.10 5.14 6.15 -2.91 -0.02 5.12 16 Total: -1.00 -61.10 325.99 6.71 -54.39 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 1.14 Total: 20.21 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 5.39 Total: -37.61 kcal Atomic # 7 Polarization: -66.90 SS G_CDS: -3.39 Total: -70.29 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.54 Total: -5.77 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -61.10 6.71 -54.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342479733.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.367 kcal (2) G-P(sol) polarization free energy of solvation -61.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds