Wall clock time and date at job start Tue Mar 31 2020 10:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76208 * 102.99880 * 2 1 4 4 C 1.39165 * 119.64450 * 179.97438 * 3 2 1 5 5 C 1.39507 * 118.92156 * 179.70011 * 4 3 2 6 6 C 1.48101 * 120.88270 * 180.29679 * 5 4 3 7 7 O 1.21518 * 119.99938 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99717 * 180.02562 * 6 5 4 9 9 C 1.39112 * 119.99573 * 175.71908 * 8 6 5 10 10 C 1.39524 * 119.83315 * 215.04565 * 9 8 6 11 11 C 1.36359 * 120.16523 * 179.71753 * 10 9 8 12 12 C 1.40887 * 119.82827 * 0.56971 * 11 10 9 13 13 C 1.41132 * 120.16012 * 179.67922 * 12 11 10 14 14 H 1.07993 * 119.99990 * 214.80233 * 13 12 11 15 15 C 1.39919 * 119.99899 * 34.79213 * 13 12 11 16 16 N 1.30865 * 119.99980 * 355.58363 * 15 13 12 17 17 Si 1.86799 * 119.99879 * 175.58004 * 15 13 12 18 18 H 1.48496 * 109.47357 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47107 * 120.00541 * 17 15 13 20 20 H 1.48506 * 109.46978 * 240.00188 * 17 15 13 21 21 C 1.40875 * 119.67784 * 359.70032 * 12 11 10 22 22 C 1.36355 * 119.83532 * 0.02562 * 21 12 11 23 23 C 1.40082 * 118.23652 * 0.28329 * 5 4 3 24 24 C 1.37937 * 119.18144 * 359.97438 * 23 5 4 25 25 N 1.31915 * 121.00991 * 0.02562 * 24 23 5 26 26 H 1.09005 * 109.47262 * 59.99792 * 1 2 3 27 27 H 1.08996 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46906 * 300.00229 * 1 2 3 29 29 H 1.07997 * 120.54410 * 359.97438 * 4 3 2 30 30 H 0.96993 * 120.00419 * 355.71119 * 8 6 5 31 31 H 1.07998 * 119.91185 * 359.96879 * 10 9 8 32 32 H 1.08000 * 120.08675 * 180.24973 * 11 10 9 33 33 H 0.97003 * 119.99914 * 179.97438 * 16 15 13 34 34 H 1.08009 * 120.08187 * 179.97438 * 21 12 11 35 35 H 1.07997 * 119.91858 * 179.97438 * 22 21 12 36 36 H 1.07997 * 120.40694 * 180.02562 * 23 5 4 37 37 H 1.08001 * 119.49040 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5437 2.1156 0.0005 5 6 3.8403 3.4787 -0.0059 6 6 5.2439 3.9512 -0.0121 7 8 6.1555 3.1477 -0.0122 8 7 5.5101 5.2725 -0.0178 9 6 6.8255 5.7173 0.0663 10 6 7.1183 6.8906 0.7621 11 6 8.4061 7.3298 0.8536 12 6 9.4405 6.6018 0.2332 13 6 10.7749 7.0536 0.3177 14 1 11.4477 6.9088 -0.5145 15 6 11.2260 7.6891 1.4797 16 7 10.3896 7.9422 2.4539 17 14 13.0221 8.1763 1.6406 18 1 13.7540 7.7824 0.4100 19 1 13.1216 9.6462 1.8261 20 1 13.6186 7.4879 2.8135 21 6 9.1363 5.4210 -0.4724 22 6 7.8446 4.9912 -0.5507 23 6 2.7753 4.3887 -0.0065 24 6 1.4817 3.9101 -0.0013 25 7 1.2367 2.6139 0.0047 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 4.3360 1.3817 0.0014 30 1 4.7846 5.9131 -0.0805 31 1 6.3236 7.4503 1.2328 32 1 8.6318 8.2360 1.3959 33 1 10.7024 8.3825 3.2596 34 1 9.9242 4.8581 -0.9509 35 1 7.6099 4.0864 -1.0916 36 1 2.9648 5.4519 -0.0118 37 1 0.6568 4.6072 -0.0022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344715297.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:56 Heat of formation + Delta-G solvation = 23.480386 kcal Electronic energy + Delta-G solvation = -21784.282731 eV Core-core repulsion = 18424.498020 eV Total energy + Delta-G solvation = -3359.784712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66309 -39.26235 -37.28176 -34.62968 -33.34994 -32.58362 -31.53402 -29.65522 -29.23958 -28.87791 -25.76235 -24.36048 -23.71603 -21.78937 -21.01589 -20.10320 -18.51576 -17.37627 -16.97799 -16.86883 -15.94446 -15.65898 -15.20430 -15.07155 -15.01664 -14.35356 -14.17172 -13.97445 -13.90647 -13.55169 -13.06346 -12.96171 -12.69291 -12.20270 -12.07146 -11.76616 -11.43398 -11.22454 -11.05603 -10.80851 -10.79348 -10.28255 -10.26003 -9.99060 -9.95112 -9.57441 -9.53253 -9.24856 -8.97750 -7.84902 -7.61514 -6.94271 -6.67604 -4.39834 0.48622 0.75142 1.16111 1.97171 2.51863 2.94553 3.03690 3.07380 3.12515 3.18379 3.41655 3.70964 3.94330 4.25410 4.56357 4.64871 4.72264 4.77552 4.84913 4.90288 4.91381 5.41480 5.48798 5.52174 5.61178 5.82361 6.12114 6.19939 6.37424 6.64418 6.83537 7.00376 7.12473 7.22835 7.39445 7.57574 7.64557 7.77261 8.00149 8.14287 8.24970 8.51286 8.61261 8.86979 8.92850 10.23300 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.038254 B = 0.002337 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.778875 B =11976.608331 C =12350.467913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.072 6.072 3 C 0.114 3.886 4 C -0.094 4.094 5 C -0.058 4.058 6 C 0.538 3.462 7 O -0.517 6.517 8 N -0.636 5.636 9 C -0.004 4.004 10 C -0.117 4.117 11 C -0.142 4.142 12 C 0.102 3.898 13 C -0.458 4.458 14 H 0.077 0.923 15 C 0.068 3.932 16 N -0.809 5.809 17 Si 0.916 3.084 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.206 4.206 22 C -0.082 4.082 23 C -0.152 4.152 24 C 0.112 3.888 25 N -0.482 5.482 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.153 0.847 30 H 0.396 0.604 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.278 0.722 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.143 0.857 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.068 -6.835 -3.052 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.167 5.833 3 C -0.134 4.134 4 C -0.121 4.121 5 C -0.070 4.070 6 C 0.324 3.676 7 O -0.393 6.393 8 N -0.279 5.279 9 C -0.096 4.096 10 C -0.137 4.137 11 C -0.162 4.162 12 C 0.099 3.901 13 C -0.488 4.488 14 H 0.096 0.904 15 C -0.147 4.147 16 N -0.436 5.436 17 Si 0.741 3.259 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.199 1.199 21 C -0.226 4.226 22 C -0.102 4.102 23 C -0.175 4.175 24 C -0.048 4.048 25 N -0.196 5.196 26 H 0.105 0.895 27 H 0.121 0.879 28 H 0.106 0.894 29 H 0.171 0.829 30 H 0.231 0.769 31 H 0.110 0.890 32 H 0.151 0.849 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.160 0.840 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.640 -8.645 -2.798 19.843 hybrid contribution 0.363 2.011 0.306 2.066 sum -17.277 -6.634 -2.492 18.674 Atomic orbital electron populations 1.23460 0.93772 1.06091 1.06698 1.85689 1.07632 0.98418 1.91526 1.22973 0.91675 0.98634 1.00164 1.21797 0.96045 0.95983 0.98243 1.20448 0.94220 0.93812 0.98561 1.18071 0.87441 0.83202 0.78877 1.90781 1.45717 1.54084 1.48736 1.42825 1.08329 1.05963 1.70755 1.17231 0.82121 1.00467 1.09784 1.20310 0.97188 0.96395 0.99790 1.21200 0.90139 1.01484 1.03371 1.17760 0.93426 0.89338 0.89581 1.19562 0.96231 1.32477 1.00568 0.90434 1.25911 1.00109 0.93292 0.95360 1.69763 1.35868 1.32359 1.05635 0.86127 0.81921 0.78586 0.79249 1.18531 1.19963 1.19930 1.20813 0.94870 0.98268 1.08627 1.20404 0.92580 0.98725 0.98493 1.22316 0.93276 1.00893 1.01032 1.22632 0.95959 0.91345 0.94835 1.67873 1.35018 1.02945 1.13767 0.89453 0.87868 0.89431 0.82936 0.76933 0.88983 0.84925 0.91100 0.88434 0.87419 0.83969 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 10.01 101.05 1.01 0.06 16 2 S -0.07 -0.74 22.55 -107.50 -2.42 -3.16 16 3 C 0.11 1.41 7.00 -16.97 -0.12 1.29 16 4 C -0.09 -1.29 9.41 -38.76 -0.36 -1.65 16 5 C -0.06 -0.80 5.91 -104.69 -0.62 -1.42 16 6 C 0.54 9.47 7.62 -12.21 -0.09 9.38 16 7 O -0.52 -11.09 13.86 5.35 0.07 -11.02 16 8 N -0.64 -10.90 5.25 -10.52 -0.06 -10.95 16 9 C 0.00 -0.08 6.30 -83.60 -0.53 -0.61 16 10 C -0.12 -2.59 9.90 -39.78 -0.39 -2.98 16 11 C -0.14 -3.57 8.61 -39.26 -0.34 -3.91 16 12 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 13 C -0.46 -12.03 9.02 -37.86 -0.34 -12.37 16 14 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 15 C 0.07 1.71 5.42 -17.33 -0.09 1.62 16 16 N -0.81 -20.73 10.60 55.55 0.59 -20.15 16 17 Si 0.92 18.75 29.56 -169.99 -5.03 13.73 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 C -0.21 -5.14 9.74 -39.26 -0.38 -5.52 16 22 C -0.08 -1.94 8.61 -39.78 -0.34 -2.28 16 23 C -0.15 -1.58 9.61 -39.00 -0.37 -1.96 16 24 C 0.11 1.08 11.16 -17.63 -0.20 0.88 16 25 N -0.48 -5.54 9.40 -12.16 -0.11 -5.65 16 26 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.65 8.14 -51.92 -0.42 0.22 16 29 H 0.15 2.14 7.74 -52.49 -0.41 1.73 16 30 H 0.40 5.15 6.96 -40.82 -0.28 4.87 16 31 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.13 3.44 6.13 -52.49 -0.32 3.12 16 33 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 34 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 35 H 0.11 2.51 6.22 -52.49 -0.33 2.18 16 36 H 0.14 1.09 6.54 -52.49 -0.34 0.75 16 37 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -30.55 334.75 -9.44 -39.99 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -3.76 Total: 9.56 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -3.77 Total: -17.40 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.42 Total: -36.75 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -2.42 Total: -3.16 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.55 -9.44 -39.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344715297.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.471 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds