Wall clock time and date at job start Tue Mar 31 2020 11:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00259 * 2 1 4 4 H 1.48498 * 109.47123 * 240.00243 * 3 2 1 5 5 H 1.48502 * 109.46889 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47104 * 119.99748 * 3 2 1 7 7 C 1.37882 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00325 * 169.40020 * 7 2 1 9 9 C 1.50701 * 119.99509 * 349.40044 * 7 2 1 10 10 C 1.53003 * 115.55157 * 325.11762 * 9 7 2 11 11 N 1.46496 * 109.46793 * 306.45950 * 10 9 7 12 12 C 1.34786 * 119.99773 * 183.71503 * 11 10 9 13 13 O 1.21552 * 119.99755 * 5.70664 * 12 11 10 14 14 C 1.47838 * 119.99776 * 185.71238 * 12 11 10 15 15 C 1.40027 * 120.55606 * 174.79891 * 14 12 11 16 16 C 1.38360 * 118.28741 * 179.97438 * 15 14 12 17 17 C 1.38354 * 119.30088 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.45742 * 180.02562 * 17 16 15 19 19 F 1.39895 * 109.47238 * 89.99381 * 18 17 16 20 20 F 1.39902 * 109.47020 * 209.99951 * 18 17 16 21 21 F 1.39900 * 109.46765 * 329.98903 * 18 17 16 22 22 N 1.31926 * 121.08226 * 0.02562 * 17 16 15 23 23 C 1.31689 * 121.88093 * 359.97438 * 22 17 16 24 24 C 1.53003 * 117.49797 * 110.79073 * 9 7 2 25 25 C 1.53001 * 117.49747 * 179.44845 * 9 7 2 26 26 H 0.96998 * 120.00238 * 5.03397 * 1 2 3 27 27 H 1.09005 * 109.46988 * 186.46434 * 10 9 7 28 28 H 1.08991 * 109.47154 * 66.46321 * 10 9 7 29 29 H 0.96998 * 120.00536 * 3.72139 * 11 10 9 30 30 H 1.07997 * 120.85360 * 0.24803 * 15 14 12 31 31 H 1.08000 * 120.34729 * 179.97438 * 16 15 14 32 32 H 1.07994 * 119.72107 * 179.97438 * 23 22 17 33 33 H 1.09003 * 117.49859 * 214.99756 * 24 9 7 34 34 H 1.08997 * 117.50270 * 0.02562 * 24 9 7 35 35 H 1.09003 * 117.49853 * 359.97438 * 25 9 7 36 36 H 1.08997 * 117.50144 * 144.97543 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0707 -1.2021 -0.1715 9 6 1.2703 -2.4879 0.2412 10 6 0.1022 -2.4104 1.2264 11 7 0.5639 -1.8210 2.4856 12 6 -0.2795 -1.7218 3.5323 13 8 -1.3890 -2.2139 3.4675 14 6 0.1451 -1.0145 4.7591 15 6 -0.7563 -0.8099 5.8110 16 6 -0.3089 -0.1428 6.9375 17 6 1.0018 0.2971 6.9880 18 6 1.4930 1.0237 8.2136 19 9 2.0099 0.0995 9.1278 20 9 2.4951 1.9292 7.8486 21 9 0.4299 1.7172 8.8019 22 7 1.8287 0.0910 5.9810 23 6 1.4503 -0.5386 4.8880 24 6 1.1376 -3.4546 -0.9373 25 6 2.0893 -3.7800 0.2167 26 1 -0.4850 0.8368 -0.0737 27 1 -0.2820 -3.4131 1.4139 28 1 -0.6890 -1.7913 0.8038 29 1 1.4763 -1.5019 2.5660 30 1 -1.7733 -1.1677 5.7464 31 1 -0.9761 0.0335 7.7683 32 1 2.1563 -0.6879 4.0845 33 1 0.2182 -4.0355 -1.0107 34 1 1.5818 -3.1551 -1.8865 35 1 3.1591 -3.6943 0.0260 36 1 1.7962 -4.5748 0.9026 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431170722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:41 Heat of formation + Delta-G solvation = -137.802282 kcal Electronic energy + Delta-G solvation = -25765.341905 eV Core-core repulsion = 21413.953841 eV Total energy + Delta-G solvation = -4351.388064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.28126 -48.80151 -48.74301 -41.87807 -40.19877 -38.45350 -35.10163 -34.16986 -34.00328 -33.30933 -28.92206 -27.67277 -26.80954 -25.18082 -24.08237 -22.94651 -21.64192 -21.16108 -19.94427 -19.65540 -19.59522 -19.11864 -18.01705 -17.65594 -16.76112 -16.44184 -16.22202 -16.20741 -15.74778 -15.71653 -15.51224 -15.18372 -15.15882 -14.97373 -14.88902 -14.86736 -14.61993 -14.31247 -14.12892 -13.63096 -13.43141 -13.18644 -12.85648 -12.69449 -12.32010 -12.04152 -11.61816 -11.27665 -11.23178 -11.07742 -10.80631 -10.70608 -10.64104 -10.14446 -9.75064 -8.04194 -6.19276 -0.90236 -0.11884 1.26703 1.42371 1.48083 1.51712 1.59744 2.19431 2.36488 2.40431 2.49274 2.72608 3.02086 3.24520 3.38238 3.47243 3.61953 3.67330 3.77406 3.83422 4.24305 4.33195 4.52949 4.58390 4.74572 4.79178 4.82483 4.98951 5.10583 5.11997 5.29572 5.52534 5.60313 5.68283 5.92282 6.28023 6.37782 6.65511 6.85512 7.24534 7.44022 8.90038 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.003932 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.259641 B = 7119.455813 C = 7938.909540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.044 3.956 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.262 1.262 7 C -0.507 4.507 8 H 0.060 0.940 9 C 0.009 3.991 10 C 0.172 3.828 11 N -0.675 5.675 12 C 0.548 3.452 13 O -0.581 6.581 14 C -0.153 4.153 15 C -0.015 4.015 16 C -0.112 4.112 17 C 0.038 3.962 18 C 0.531 3.469 19 F -0.169 7.169 20 F -0.172 7.172 21 F -0.161 7.161 22 N -0.463 5.463 23 C 0.138 3.862 24 C -0.198 4.198 25 C -0.186 4.186 26 H 0.260 0.740 27 H 0.032 0.968 28 H 0.079 0.921 29 H 0.406 0.594 30 H 0.173 0.827 31 H 0.192 0.808 32 H 0.181 0.819 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.934 0.649 15.483 15.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.158 4.158 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.186 1.186 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.009 3.991 10 C 0.049 3.951 11 N -0.322 5.322 12 C 0.334 3.666 13 O -0.464 6.464 14 C -0.159 4.159 15 C -0.041 4.041 16 C -0.132 4.132 17 C -0.101 4.101 18 C 0.475 3.525 19 F -0.150 7.150 20 F -0.153 7.153 21 F -0.143 7.143 22 N -0.172 5.172 23 C -0.021 4.021 24 C -0.236 4.236 25 C -0.223 4.223 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.243 0.757 30 H 0.190 0.810 31 H 0.209 0.791 32 H 0.198 0.802 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.894 0.775 15.552 15.597 hybrid contribution 0.062 0.828 -0.530 0.985 sum 0.955 1.603 15.022 15.137 Atomic orbital electron populations 1.69971 1.06915 1.27199 1.48721 1.25455 0.95131 1.01199 0.94064 0.85971 0.78680 0.79984 0.79272 1.20233 1.22053 1.18632 1.20656 0.94031 0.89739 1.49965 0.92162 1.19229 0.95094 0.89608 0.95193 1.20779 0.97604 0.94861 0.81849 1.45705 1.14995 1.59617 1.11875 1.18215 0.84748 0.80191 0.83457 1.90709 1.22175 1.50198 1.83278 1.21313 0.96666 1.01546 0.96332 1.21990 1.00916 0.91567 0.89653 1.22137 0.94808 0.95966 1.00243 1.21405 0.93209 1.01090 0.94436 1.17688 0.75407 0.77099 0.82260 1.93245 1.87216 1.66002 1.68559 1.93231 1.62026 1.68462 1.91581 1.93232 1.56015 1.79888 1.85121 1.67186 1.36937 1.12677 1.00363 1.23159 0.93887 0.90741 0.94361 1.22936 1.00382 1.06172 0.94159 1.22973 0.96980 1.00400 1.01933 0.93055 0.94991 0.90320 0.75693 0.80995 0.79106 0.80233 0.90595 0.90689 0.89739 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.85 10.75 21.45 0.23 -45.62 16 2 C 0.04 2.12 5.13 84.66 0.43 2.56 16 3 Si 0.93 39.25 29.55 68.60 2.03 41.28 16 4 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.51 -24.02 8.27 25.60 0.21 -23.81 16 8 H 0.06 2.85 7.84 -2.91 -0.02 2.82 16 9 C 0.01 0.41 2.00 -52.92 -0.11 0.31 16 10 C 0.17 7.61 4.75 86.38 0.41 8.02 16 11 N -0.67 -26.32 5.23 -465.98 -2.44 -28.75 16 12 C 0.55 20.50 7.77 86.78 0.67 21.17 16 13 O -0.58 -25.07 16.43 -3.88 -0.06 -25.13 16 14 C -0.15 -4.53 5.89 -19.99 -0.12 -4.65 16 15 C -0.01 -0.35 9.72 22.73 0.22 -0.13 16 16 C -0.11 -2.14 9.42 22.33 0.21 -1.93 16 17 C 0.04 0.88 6.30 42.57 0.27 1.15 16 18 C 0.53 11.34 3.43 71.24 0.24 11.58 16 19 F -0.17 -3.58 17.30 44.97 0.78 -2.80 16 20 F -0.17 -4.24 17.03 44.97 0.77 -3.47 16 21 F -0.16 -2.96 16.43 44.97 0.74 -2.22 16 22 N -0.46 -12.86 9.94 -182.82 -1.82 -14.68 16 23 C 0.14 3.86 10.71 85.02 0.91 4.77 16 24 C -0.20 -8.08 9.96 30.62 0.30 -7.78 16 25 C -0.19 -6.95 9.92 30.62 0.30 -6.65 16 26 H 0.26 13.20 8.32 -92.71 -0.77 12.43 16 27 H 0.03 1.38 8.06 -2.38 -0.02 1.36 16 28 H 0.08 4.05 6.04 -2.39 -0.01 4.04 16 29 H 0.41 14.78 6.01 -92.71 -0.56 14.22 16 30 H 0.17 3.63 7.74 -2.91 -0.02 3.61 16 31 H 0.19 2.16 7.59 -2.91 -0.02 2.13 16 32 H 0.18 4.72 6.44 -2.91 -0.02 4.70 16 33 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.09 2.92 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -57.01 327.83 4.79 -52.22 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.59 Total: 24.56 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 3.97 Total: 4.62 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -4.02 Total: -89.05 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.06 Total: -25.13 kcal Atomic # 9 Polarization: -10.77 SS G_CDS: 2.28 Total: -8.49 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -57.01 4.79 -52.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431170722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.583 kcal (2) G-P(sol) polarization free energy of solvation -57.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds