Wall clock time and date at job start Tue Mar 31 2020 10:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99932 * 2 1 4 4 H 1.48501 * 109.46675 * 271.24281 * 3 2 1 5 5 H 1.48495 * 109.46924 * 31.23937 * 3 2 1 6 6 H 1.48495 * 109.46960 * 151.24252 * 3 2 1 7 7 C 1.37880 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99834 * 350.51094 * 7 2 1 9 9 C 1.50698 * 119.99848 * 170.79338 * 7 2 1 10 10 C 1.53006 * 115.54696 * 298.57561 * 9 7 2 11 11 N 1.46503 * 109.47234 * 305.10953 * 10 9 7 12 12 C 1.34775 * 120.00189 * 184.26326 * 11 10 9 13 13 O 1.21593 * 119.99717 * 4.69670 * 12 11 10 14 14 N 1.34771 * 119.99981 * 184.70620 * 12 11 10 15 15 C 1.40183 * 120.00121 * 186.12721 * 14 12 11 16 16 C 1.38789 * 120.04321 * 42.24460 * 15 14 12 17 17 C 1.38318 * 119.95730 * 179.97438 * 16 15 14 18 18 F 1.35103 * 119.97848 * 179.97438 * 17 16 15 19 19 C 1.38671 * 120.04109 * 0.02562 * 17 16 15 20 20 F 1.35103 * 119.96056 * 180.02562 * 19 17 16 21 21 C 1.38412 * 120.08477 * 359.97438 * 19 17 16 22 22 C 1.38327 * 120.04174 * 359.78969 * 21 19 17 23 23 F 1.35097 * 120.02107 * 180.25354 * 22 21 19 24 24 C 1.52998 * 117.49897 * 152.87142 * 9 7 2 25 25 C 1.52989 * 117.50374 * 84.24809 * 9 7 2 26 26 H 0.97003 * 120.00144 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47515 * 65.11508 * 10 9 7 28 28 H 1.08996 * 109.46945 * 185.11428 * 10 9 7 29 29 H 0.97007 * 119.99705 * 4.26860 * 11 10 9 30 30 H 0.96999 * 120.00197 * 6.11980 * 14 12 11 31 31 H 1.07999 * 120.01607 * 359.96258 * 16 15 14 32 32 H 1.07998 * 119.97785 * 180.02562 * 21 19 17 33 33 H 1.09003 * 117.49634 * 359.97438 * 24 9 7 34 34 H 1.09000 * 117.49749 * 145.01406 * 24 9 7 35 35 H 1.09005 * 117.50299 * 214.97913 * 25 9 7 36 36 H 1.09001 * 117.49768 * 359.97125 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4703 2.0616 -1.3998 5 1 1.4599 2.6450 0.7261 6 1 3.5596 1.4328 0.6736 7 6 2.0045 -1.1941 -0.0005 8 1 1.4756 -2.1230 0.1532 9 6 3.4970 -1.2023 -0.2093 10 6 3.9787 -0.6442 -1.5500 11 7 3.3108 -1.3548 -2.6433 12 6 3.6441 -1.0901 -3.9221 13 8 4.5572 -0.3253 -4.1665 14 7 2.9651 -1.6730 -4.9298 15 6 3.3911 -1.5002 -6.2541 16 6 4.7427 -1.5629 -6.5631 17 6 5.1610 -1.3927 -7.8704 18 9 6.4767 -1.4532 -8.1716 19 6 4.2309 -1.1590 -8.8721 20 9 4.6413 -0.9935 -10.1486 21 6 2.8826 -1.0961 -8.5659 22 6 2.4600 -1.2707 -7.2604 23 9 1.1434 -1.2143 -6.9629 24 6 4.2891 -2.3609 0.3997 25 6 4.3830 -0.9632 1.0147 26 1 -0.4850 0.8401 -0.0004 27 1 3.7408 0.4179 -1.6081 28 1 5.0570 -0.7800 -1.6337 29 1 2.6286 -2.0158 -2.4467 30 1 2.1817 -2.2122 -4.7388 31 1 5.4673 -1.7443 -5.7831 32 1 2.1596 -0.9144 -9.3474 33 1 3.7308 -3.1170 0.9518 34 1 5.1537 -2.7259 -0.1548 35 1 5.3093 -0.4086 0.8650 36 1 3.8864 -0.7994 1.9712 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432076280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:26 Heat of formation + Delta-G solvation = -105.368909 kcal Electronic energy + Delta-G solvation = -25597.704195 eV Core-core repulsion = 21247.722547 eV Total energy + Delta-G solvation = -4349.981648 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.70897 -49.22552 -48.77597 -40.47536 -38.60307 -37.16833 -34.66409 -33.64562 -32.29730 -30.87862 -29.40041 -26.76859 -25.28632 -23.96696 -22.86728 -21.69462 -20.80077 -19.47595 -18.85361 -18.47230 -18.13924 -17.57212 -16.84464 -16.63756 -16.32603 -15.74848 -15.54114 -15.36397 -15.17553 -14.88031 -14.79894 -14.64799 -14.33598 -14.16725 -13.62902 -13.36433 -13.03771 -12.77829 -12.46044 -12.27933 -12.11705 -11.96518 -11.14707 -10.80935 -10.65461 -10.39815 -10.35357 -10.14533 -9.62150 -9.28607 -9.22113 -8.98031 -8.58834 -8.56305 -8.23554 -6.28600 -4.30862 0.43990 0.55461 2.53424 2.80726 3.21892 3.32220 3.35223 3.37850 3.40034 3.72295 4.00139 4.16166 4.29952 4.35566 4.66130 4.83231 4.98082 5.11009 5.22710 5.42876 5.52370 5.57620 5.66533 5.86239 6.03712 6.10040 6.13909 6.33520 6.40157 6.53108 6.61417 6.77994 6.87314 6.99768 7.09564 7.56994 8.19621 8.31207 8.70838 8.73833 9.35624 10.81905 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.019626 B = 0.003562 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.344563 B = 7858.110094 C = 8532.758677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.087 3.913 3 Si 0.865 3.135 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.250 1.250 7 C -0.495 4.495 8 H 0.079 0.921 9 C -0.019 4.019 10 C 0.169 3.831 11 N -0.704 5.704 12 C 0.700 3.300 13 O -0.586 6.586 14 N -0.689 5.689 15 C 0.174 3.826 16 C -0.100 4.100 17 C 0.082 3.918 18 F -0.122 7.122 19 C 0.075 3.925 20 F -0.123 7.123 21 C -0.143 4.143 22 C 0.094 3.906 23 F -0.120 7.120 24 C -0.180 4.180 25 C -0.186 4.186 26 H 0.267 0.733 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.410 0.590 30 H 0.416 0.584 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.040 -4.994 -14.502 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.117 4.117 3 Si 0.692 3.308 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.174 1.174 7 C -0.532 4.532 8 H 0.097 0.903 9 C -0.020 4.020 10 C 0.045 3.955 11 N -0.356 5.356 12 C 0.400 3.600 13 O -0.463 6.463 14 N -0.338 5.338 15 C 0.076 3.924 16 C -0.122 4.122 17 C 0.061 3.939 18 F -0.100 7.100 19 C 0.054 3.946 20 F -0.102 7.102 21 C -0.163 4.163 22 C 0.071 3.929 23 F -0.099 7.099 24 C -0.217 4.217 25 C -0.224 4.224 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.246 0.754 30 H 0.253 0.747 31 H 0.181 0.819 32 H 0.180 0.820 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.696 -4.171 -14.593 16.589 hybrid contribution -0.365 0.546 0.035 0.658 sum 6.331 -3.625 -14.557 16.283 Atomic orbital electron populations 1.69895 1.06413 1.27463 1.48554 1.24901 0.94450 0.99044 0.93343 0.87066 0.81449 0.83624 0.78643 1.20317 1.21797 1.17369 1.20215 0.87229 0.94831 1.50907 0.90316 1.19591 0.94630 0.98867 0.88894 1.20989 0.94314 0.95197 0.84960 1.45046 1.43515 1.44330 1.02739 1.15962 0.82340 0.80672 0.81026 1.90932 1.32340 1.39621 1.83453 1.42623 1.33489 1.55072 1.02649 1.17095 0.91645 0.99903 0.83801 1.20870 0.95676 1.00738 0.94903 1.17337 0.78246 1.05722 0.92582 1.91556 1.31004 1.93832 1.93615 1.17127 0.91676 1.06674 0.79144 1.91548 1.90733 1.93108 1.34767 1.20722 0.94718 1.04543 0.96331 1.17105 0.78405 1.04928 0.92419 1.91565 1.30823 1.93748 1.93736 1.22811 1.01869 0.91826 1.05159 1.23035 1.01137 0.98763 0.99514 0.92335 0.92644 0.92776 0.75387 0.74676 0.81914 0.82015 0.89616 0.90814 0.91065 0.89225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 13.96 55.43 0.77 -24.24 16 2 C 0.09 2.29 5.45 -17.82 -0.10 2.19 16 3 Si 0.86 20.54 24.97 -169.99 -4.24 16.30 16 4 H -0.28 -6.75 6.89 56.52 0.39 -6.36 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.25 -5.59 5.94 56.52 0.34 -5.26 16 7 C -0.50 -12.24 8.66 -34.44 -0.30 -12.53 16 8 H 0.08 2.11 8.06 -52.49 -0.42 1.69 16 9 C -0.02 -0.39 1.00 -155.66 -0.16 -0.54 16 10 C 0.17 3.40 5.16 -4.04 -0.02 3.38 16 11 N -0.70 -12.68 5.42 -65.22 -0.35 -13.03 16 12 C 0.70 12.20 8.24 -86.92 -0.72 11.48 16 13 O -0.59 -11.90 14.70 5.28 0.08 -11.82 16 14 N -0.69 -9.40 5.18 -14.15 -0.07 -9.48 16 15 C 0.17 2.22 6.10 -83.55 -0.51 1.71 16 16 C -0.10 -1.27 8.65 -39.35 -0.34 -1.61 16 17 C 0.08 0.98 7.30 -39.39 -0.29 0.70 16 18 F -0.12 -1.54 17.18 2.25 0.04 -1.50 16 19 C 0.08 0.82 7.30 -39.36 -0.29 0.53 16 20 F -0.12 -1.37 17.18 2.25 0.04 -1.33 16 21 C -0.14 -1.38 10.00 -39.48 -0.39 -1.78 16 22 C 0.09 1.07 7.31 -39.26 -0.29 0.78 16 23 F -0.12 -1.44 17.06 2.25 0.04 -1.40 16 24 C -0.18 -3.24 9.92 -26.74 -0.27 -3.51 16 25 C -0.19 -3.60 8.33 -26.74 -0.22 -3.82 16 26 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.06 1.24 4.81 -51.93 -0.25 0.99 16 28 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 29 H 0.41 6.95 8.00 -40.82 -0.33 6.62 16 30 H 0.42 4.68 8.84 -40.82 -0.36 4.32 16 31 H 0.16 2.18 7.10 -52.49 -0.37 1.80 16 32 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 322.79 15.07 4.86 4.86 Total: -1.00 -28.99 322.79 -6.20 -35.19 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -3.48 Total: 9.46 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.88 Total: -3.02 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.35 Total: -46.74 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.12 Total: -4.23 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.24 Total: 16.30 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.99 -6.20 -35.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432076280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.177 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds