Wall clock time and date at job start Tue Mar 31 2020 10:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99932 * 2 1 4 4 H 1.48501 * 109.46675 * 271.24281 * 3 2 1 5 5 H 1.48495 * 109.46924 * 31.23937 * 3 2 1 6 6 H 1.48495 * 109.46960 * 151.24252 * 3 2 1 7 7 C 1.37880 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99834 * 350.51094 * 7 2 1 9 9 C 1.50698 * 119.99848 * 170.79338 * 7 2 1 10 10 C 1.53006 * 115.54696 * 298.57561 * 9 7 2 11 11 N 1.46503 * 109.47234 * 305.10953 * 10 9 7 12 12 C 1.34775 * 120.00189 * 184.26326 * 11 10 9 13 13 O 1.21593 * 119.99717 * 4.69670 * 12 11 10 14 14 N 1.34771 * 119.99981 * 184.70620 * 12 11 10 15 15 C 1.40183 * 120.00121 * 186.12721 * 14 12 11 16 16 C 1.38789 * 120.04321 * 42.24460 * 15 14 12 17 17 C 1.38318 * 119.95730 * 179.97438 * 16 15 14 18 18 F 1.35103 * 119.97848 * 179.97438 * 17 16 15 19 19 C 1.38671 * 120.04109 * 0.02562 * 17 16 15 20 20 F 1.35103 * 119.96056 * 180.02562 * 19 17 16 21 21 C 1.38412 * 120.08477 * 359.97438 * 19 17 16 22 22 C 1.38327 * 120.04174 * 359.78969 * 21 19 17 23 23 F 1.35097 * 120.02107 * 180.25354 * 22 21 19 24 24 C 1.52998 * 117.49897 * 152.87142 * 9 7 2 25 25 C 1.52989 * 117.50374 * 84.24809 * 9 7 2 26 26 H 0.97003 * 120.00144 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47515 * 65.11508 * 10 9 7 28 28 H 1.08996 * 109.46945 * 185.11428 * 10 9 7 29 29 H 0.97007 * 119.99705 * 4.26860 * 11 10 9 30 30 H 0.96999 * 120.00197 * 6.11980 * 14 12 11 31 31 H 1.07999 * 120.01607 * 359.96258 * 16 15 14 32 32 H 1.07998 * 119.97785 * 180.02562 * 21 19 17 33 33 H 1.09003 * 117.49634 * 359.97438 * 24 9 7 34 34 H 1.09000 * 117.49749 * 145.01406 * 24 9 7 35 35 H 1.09005 * 117.50299 * 214.97913 * 25 9 7 36 36 H 1.09001 * 117.49768 * 359.97125 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4703 2.0616 -1.3998 5 1 1.4599 2.6450 0.7261 6 1 3.5596 1.4328 0.6736 7 6 2.0045 -1.1941 -0.0005 8 1 1.4756 -2.1230 0.1532 9 6 3.4970 -1.2023 -0.2093 10 6 3.9787 -0.6442 -1.5500 11 7 3.3108 -1.3548 -2.6433 12 6 3.6441 -1.0901 -3.9221 13 8 4.5572 -0.3253 -4.1665 14 7 2.9651 -1.6730 -4.9298 15 6 3.3911 -1.5002 -6.2541 16 6 4.7427 -1.5629 -6.5631 17 6 5.1610 -1.3927 -7.8704 18 9 6.4767 -1.4532 -8.1716 19 6 4.2309 -1.1590 -8.8721 20 9 4.6413 -0.9935 -10.1486 21 6 2.8826 -1.0961 -8.5659 22 6 2.4600 -1.2707 -7.2604 23 9 1.1434 -1.2143 -6.9629 24 6 4.2891 -2.3609 0.3997 25 6 4.3830 -0.9632 1.0147 26 1 -0.4850 0.8401 -0.0004 27 1 3.7408 0.4179 -1.6081 28 1 5.0570 -0.7800 -1.6337 29 1 2.6286 -2.0158 -2.4467 30 1 2.1817 -2.2122 -4.7388 31 1 5.4673 -1.7443 -5.7831 32 1 2.1596 -0.9144 -9.3474 33 1 3.7308 -3.1170 0.9518 34 1 5.1537 -2.7259 -0.1548 35 1 5.3093 -0.4086 0.8650 36 1 3.8864 -0.7994 1.9712 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432076280.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:25 Heat of formation + Delta-G solvation = -123.451162 kcal Electronic energy + Delta-G solvation = -25598.488300 eV Core-core repulsion = 21247.722547 eV Total energy + Delta-G solvation = -4350.765753 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.63843 -50.16464 -49.70911 -41.71710 -39.75161 -38.68495 -35.85245 -35.09759 -34.28410 -31.81137 -30.45922 -28.38177 -27.02357 -24.95771 -23.87582 -23.18524 -22.08185 -21.14728 -19.95879 -19.55489 -19.26272 -18.69162 -18.27688 -17.60603 -17.57404 -17.11325 -16.67882 -16.61313 -16.28199 -16.10181 -15.97640 -15.76551 -15.63037 -15.27515 -14.98094 -14.88031 -14.60264 -14.19702 -13.96740 -13.60511 -13.12749 -13.00131 -12.90857 -12.67412 -12.15929 -12.09048 -11.65581 -11.47257 -11.37313 -11.01687 -10.70924 -10.38812 -10.17984 -9.98192 -9.35035 -8.32207 -6.34088 -0.51016 -0.34346 1.30513 1.35941 1.39513 1.48156 1.74381 2.13511 2.34157 2.46419 2.78611 2.86784 3.05152 3.19305 3.30651 3.41942 3.74244 4.01942 4.05491 4.31213 4.34341 4.46896 4.47940 4.56298 4.63261 4.71132 4.77956 4.94936 5.05818 5.10227 5.24901 5.45474 5.53615 5.55827 5.68818 5.78155 6.30894 6.71872 6.88980 7.33901 7.34820 8.81561 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.019626 B = 0.003562 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.344563 B = 7858.110094 C = 8532.758677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.042 3.958 3 Si 0.910 3.090 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.226 1.226 7 C -0.477 4.477 8 H 0.049 0.951 9 C -0.043 4.043 10 C 0.176 3.824 11 N -0.706 5.706 12 C 0.702 3.298 13 O -0.615 6.615 14 N -0.677 5.677 15 C 0.156 3.844 16 C -0.104 4.104 17 C 0.077 3.923 18 F -0.128 7.128 19 C 0.082 3.918 20 F -0.122 7.122 21 C -0.122 4.122 22 C 0.098 3.902 23 F -0.123 7.123 24 C -0.154 4.154 25 C -0.184 4.184 26 H 0.264 0.736 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.413 0.587 30 H 0.427 0.573 31 H 0.153 0.847 32 H 0.195 0.805 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 -5.312 -15.604 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.157 4.157 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.227 1.227 6 H -0.148 1.148 7 C -0.514 4.514 8 H 0.067 0.933 9 C -0.044 4.044 10 C 0.052 3.948 11 N -0.359 5.359 12 C 0.402 3.598 13 O -0.495 6.495 14 N -0.328 5.328 15 C 0.058 3.942 16 C -0.126 4.126 17 C 0.056 3.944 18 F -0.106 7.106 19 C 0.061 3.939 20 F -0.100 7.100 21 C -0.142 4.142 22 C 0.075 3.925 23 F -0.101 7.101 24 C -0.191 4.191 25 C -0.222 4.222 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.250 0.750 30 H 0.266 0.734 31 H 0.170 0.830 32 H 0.212 0.788 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.898 -4.524 -15.710 18.156 hybrid contribution -0.729 0.551 0.301 0.962 sum 7.169 -3.973 -15.409 17.453 Atomic orbital electron populations 1.70006 1.07878 1.27800 1.51578 1.25468 0.94766 1.01653 0.93849 0.86345 0.81428 0.80573 0.77910 1.21548 1.22677 1.14843 1.20334 0.89424 0.93156 1.48499 0.93319 1.19460 0.92583 1.02284 0.90101 1.20810 0.95227 0.93897 0.84891 1.44955 1.43686 1.44393 1.02839 1.16008 0.82119 0.80418 0.81258 1.90906 1.33749 1.40985 1.83909 1.42396 1.33313 1.54618 1.02466 1.17236 0.92099 1.01324 0.83494 1.20747 0.95503 1.01279 0.95031 1.17395 0.78225 1.06123 0.92683 1.91540 1.31512 1.93930 1.93619 1.17139 0.91855 1.06050 0.78855 1.91560 1.90789 1.93028 1.34626 1.20949 0.94681 1.02347 0.96235 1.17118 0.78002 1.04721 0.92651 1.91568 1.30950 1.93761 1.93821 1.22858 1.01597 0.91014 1.03658 1.23079 1.01160 0.99994 0.97974 0.92680 0.95066 0.91290 0.74982 0.73394 0.82976 0.78803 0.89661 0.88098 0.88911 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.91 13.96 21.45 0.30 -53.61 16 2 C 0.04 2.25 5.45 84.66 0.46 2.71 16 3 Si 0.91 42.46 24.97 68.60 1.71 44.17 16 4 H -0.29 -13.92 6.89 99.48 0.69 -13.23 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.23 -9.52 5.94 99.48 0.59 -8.92 16 7 C -0.48 -23.59 8.66 25.60 0.22 -23.37 16 8 H 0.05 2.66 8.06 -2.91 -0.02 2.64 16 9 C -0.04 -1.72 1.00 -52.93 -0.05 -1.77 16 10 C 0.18 6.83 5.16 86.38 0.45 7.27 16 11 N -0.71 -24.89 5.42 -478.53 -2.59 -27.48 16 12 C 0.70 24.01 8.24 179.06 1.48 25.48 16 13 O -0.62 -24.70 14.70 -4.01 -0.06 -24.75 16 14 N -0.68 -17.98 5.18 -316.94 -1.64 -19.62 16 15 C 0.16 3.81 6.10 38.12 0.23 4.04 16 16 C -0.10 -2.56 8.65 22.42 0.19 -2.37 16 17 C 0.08 1.74 7.30 22.39 0.16 1.91 16 18 F -0.13 -3.11 17.18 44.97 0.77 -2.34 16 19 C 0.08 1.60 7.30 22.41 0.16 1.76 16 20 F -0.12 -2.41 17.18 44.97 0.77 -1.64 16 21 C -0.12 -2.01 10.00 22.33 0.22 -1.78 16 22 C 0.10 2.02 7.31 22.47 0.16 2.18 16 23 F -0.12 -2.69 17.06 44.97 0.77 -1.92 16 24 C -0.15 -5.13 9.92 30.59 0.30 -4.82 16 25 C -0.18 -6.59 8.33 30.59 0.25 -6.34 16 26 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.03 1.37 4.81 -2.39 -0.01 1.35 16 28 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 29 H 0.41 13.82 8.00 -92.70 -0.74 13.08 16 30 H 0.43 9.26 8.84 -92.71 -0.82 8.44 16 31 H 0.15 4.07 7.10 -2.91 -0.02 4.05 16 32 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.09 2.95 8.14 -2.38 -0.02 2.94 16 36 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -62.27 322.79 3.76 -58.52 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -0.52 Total: 23.79 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 4.25 Total: 4.90 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -3.93 Total: -100.71 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.06 Total: -24.75 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 2.31 Total: -5.91 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.71 Total: 44.17 kcal Total: -62.27 3.76 -58.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432076280.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.936 kcal (2) G-P(sol) polarization free energy of solvation -62.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds