Wall clock time and date at job start Tue Mar 31 2020 10:59:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86809 * 119.99932 * 2 1
4 4 H 1.48501 * 109.46675 * 271.24281 * 3 2 1
5 5 H 1.48495 * 109.46924 * 31.23937 * 3 2 1
6 6 H 1.48495 * 109.46960 * 151.24252 * 3 2 1
7 7 C 1.37880 * 120.00091 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99834 * 350.51094 * 7 2 1
9 9 C 1.50698 * 119.99848 * 170.79338 * 7 2 1
10 10 C 1.53006 * 115.54696 * 298.57561 * 9 7 2
11 11 N 1.46503 * 109.47234 * 305.10953 * 10 9 7
12 12 C 1.34775 * 120.00189 * 184.26326 * 11 10 9
13 13 O 1.21593 * 119.99717 * 4.69670 * 12 11 10
14 14 N 1.34771 * 119.99981 * 184.70620 * 12 11 10
15 15 C 1.40183 * 120.00121 * 186.12721 * 14 12 11
16 16 C 1.38789 * 120.04321 * 42.24460 * 15 14 12
17 17 C 1.38318 * 119.95730 * 179.97438 * 16 15 14
18 18 F 1.35103 * 119.97848 * 179.97438 * 17 16 15
19 19 C 1.38671 * 120.04109 * 0.02562 * 17 16 15
20 20 F 1.35103 * 119.96056 * 180.02562 * 19 17 16
21 21 C 1.38412 * 120.08477 * 359.97438 * 19 17 16
22 22 C 1.38327 * 120.04174 * 359.78969 * 21 19 17
23 23 F 1.35097 * 120.02107 * 180.25354 * 22 21 19
24 24 C 1.52998 * 117.49897 * 152.87142 * 9 7 2
25 25 C 1.52989 * 117.50374 * 84.24809 * 9 7 2
26 26 H 0.97003 * 120.00144 * 0.02562 * 1 2 3
27 27 H 1.08994 * 109.47515 * 65.11508 * 10 9 7
28 28 H 1.08996 * 109.46945 * 185.11428 * 10 9 7
29 29 H 0.97007 * 119.99705 * 4.26860 * 11 10 9
30 30 H 0.96999 * 120.00197 * 6.11980 * 14 12 11
31 31 H 1.07999 * 120.01607 * 359.96258 * 16 15 14
32 32 H 1.07998 * 119.97785 * 180.02562 * 21 19 17
33 33 H 1.09003 * 117.49634 * 359.97438 * 24 9 7
34 34 H 1.09000 * 117.49749 * 145.01406 * 24 9 7
35 35 H 1.09005 * 117.50299 * 214.97913 * 25 9 7
36 36 H 1.09001 * 117.49768 * 359.97125 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4703 2.0616 -1.3998
5 1 1.4599 2.6450 0.7261
6 1 3.5596 1.4328 0.6736
7 6 2.0045 -1.1941 -0.0005
8 1 1.4756 -2.1230 0.1532
9 6 3.4970 -1.2023 -0.2093
10 6 3.9787 -0.6442 -1.5500
11 7 3.3108 -1.3548 -2.6433
12 6 3.6441 -1.0901 -3.9221
13 8 4.5572 -0.3253 -4.1665
14 7 2.9651 -1.6730 -4.9298
15 6 3.3911 -1.5002 -6.2541
16 6 4.7427 -1.5629 -6.5631
17 6 5.1610 -1.3927 -7.8704
18 9 6.4767 -1.4532 -8.1716
19 6 4.2309 -1.1590 -8.8721
20 9 4.6413 -0.9935 -10.1486
21 6 2.8826 -1.0961 -8.5659
22 6 2.4600 -1.2707 -7.2604
23 9 1.1434 -1.2143 -6.9629
24 6 4.2891 -2.3609 0.3997
25 6 4.3830 -0.9632 1.0147
26 1 -0.4850 0.8401 -0.0004
27 1 3.7408 0.4179 -1.6081
28 1 5.0570 -0.7800 -1.6337
29 1 2.6286 -2.0158 -2.4467
30 1 2.1817 -2.2122 -4.7388
31 1 5.4673 -1.7443 -5.7831
32 1 2.1596 -0.9144 -9.3474
33 1 3.7308 -3.1170 0.9518
34 1 5.1537 -2.7259 -0.1548
35 1 5.3093 -0.4086 0.8650
36 1 3.8864 -0.7994 1.9712
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000432076280.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:59:25
Heat of formation + Delta-G solvation = -123.451162 kcal
Electronic energy + Delta-G solvation = -25598.488300 eV
Core-core repulsion = 21247.722547 eV
Total energy + Delta-G solvation = -4350.765753 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 314.098 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-50.63843 -50.16464 -49.70911 -41.71710 -39.75161 -38.68495 -35.85245 -35.09759
-34.28410 -31.81137 -30.45922 -28.38177 -27.02357 -24.95771 -23.87582 -23.18524
-22.08185 -21.14728 -19.95879 -19.55489 -19.26272 -18.69162 -18.27688 -17.60603
-17.57404 -17.11325 -16.67882 -16.61313 -16.28199 -16.10181 -15.97640 -15.76551
-15.63037 -15.27515 -14.98094 -14.88031 -14.60264 -14.19702 -13.96740 -13.60511
-13.12749 -13.00131 -12.90857 -12.67412 -12.15929 -12.09048 -11.65581 -11.47257
-11.37313 -11.01687 -10.70924 -10.38812 -10.17984 -9.98192 -9.35035 -8.32207
-6.34088 -0.51016 -0.34346 1.30513 1.35941 1.39513 1.48156 1.74381
2.13511 2.34157 2.46419 2.78611 2.86784 3.05152 3.19305 3.30651
3.41942 3.74244 4.01942 4.05491 4.31213 4.34341 4.46896 4.47940
4.56298 4.63261 4.71132 4.77956 4.94936 5.05818 5.10227 5.24901
5.45474 5.53615 5.55827 5.68818 5.78155 6.30894 6.71872 6.88980
7.33901 7.34820 8.81561
Molecular weight = 314.10amu
Principal moments of inertia in cm(-1)
A = 0.019626 B = 0.003562 C = 0.003281
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1426.344563 B = 7858.110094 C = 8532.758677
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C 0.042 3.958
3 Si 0.910 3.090
4 H -0.288 1.288
5 H -0.299 1.299
6 H -0.226 1.226
7 C -0.477 4.477
8 H 0.049 0.951
9 C -0.043 4.043
10 C 0.176 3.824
11 N -0.706 5.706
12 C 0.702 3.298
13 O -0.615 6.615
14 N -0.677 5.677
15 C 0.156 3.844
16 C -0.104 4.104
17 C 0.077 3.923
18 F -0.128 7.128
19 C 0.082 3.918
20 F -0.122 7.122
21 C -0.122 4.122
22 C 0.098 3.902
23 F -0.123 7.123
24 C -0.154 4.154
25 C -0.184 4.184
26 H 0.264 0.736
27 H 0.031 0.969
28 H 0.069 0.931
29 H 0.413 0.587
30 H 0.427 0.573
31 H 0.153 0.847
32 H 0.195 0.805
33 H 0.085 0.915
34 H 0.101 0.899
35 H 0.093 0.907
36 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.235 -5.312 -15.604 18.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.573 5.573
2 C -0.157 4.157
3 Si 0.737 3.263
4 H -0.215 1.215
5 H -0.227 1.227
6 H -0.148 1.148
7 C -0.514 4.514
8 H 0.067 0.933
9 C -0.044 4.044
10 C 0.052 3.948
11 N -0.359 5.359
12 C 0.402 3.598
13 O -0.495 6.495
14 N -0.328 5.328
15 C 0.058 3.942
16 C -0.126 4.126
17 C 0.056 3.944
18 F -0.106 7.106
19 C 0.061 3.939
20 F -0.100 7.100
21 C -0.142 4.142
22 C 0.075 3.925
23 F -0.101 7.101
24 C -0.191 4.191
25 C -0.222 4.222
26 H 0.073 0.927
27 H 0.049 0.951
28 H 0.087 0.913
29 H 0.250 0.750
30 H 0.266 0.734
31 H 0.170 0.830
32 H 0.212 0.788
33 H 0.103 0.897
34 H 0.119 0.881
35 H 0.111 0.889
36 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 7.898 -4.524 -15.710 18.156
hybrid contribution -0.729 0.551 0.301 0.962
sum 7.169 -3.973 -15.409 17.453
Atomic orbital electron populations
1.70006 1.07878 1.27800 1.51578 1.25468 0.94766 1.01653 0.93849
0.86345 0.81428 0.80573 0.77910 1.21548 1.22677 1.14843 1.20334
0.89424 0.93156 1.48499 0.93319 1.19460 0.92583 1.02284 0.90101
1.20810 0.95227 0.93897 0.84891 1.44955 1.43686 1.44393 1.02839
1.16008 0.82119 0.80418 0.81258 1.90906 1.33749 1.40985 1.83909
1.42396 1.33313 1.54618 1.02466 1.17236 0.92099 1.01324 0.83494
1.20747 0.95503 1.01279 0.95031 1.17395 0.78225 1.06123 0.92683
1.91540 1.31512 1.93930 1.93619 1.17139 0.91855 1.06050 0.78855
1.91560 1.90789 1.93028 1.34626 1.20949 0.94681 1.02347 0.96235
1.17118 0.78002 1.04721 0.92651 1.91568 1.30950 1.93761 1.93821
1.22858 1.01597 0.91014 1.03658 1.23079 1.01160 0.99994 0.97974
0.92680 0.95066 0.91290 0.74982 0.73394 0.82976 0.78803 0.89661
0.88098 0.88911 0.90033
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.91 13.96 21.45 0.30 -53.61 16
2 C 0.04 2.25 5.45 84.66 0.46 2.71 16
3 Si 0.91 42.46 24.97 68.60 1.71 44.17 16
4 H -0.29 -13.92 6.89 99.48 0.69 -13.23 16
5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16
6 H -0.23 -9.52 5.94 99.48 0.59 -8.92 16
7 C -0.48 -23.59 8.66 25.60 0.22 -23.37 16
8 H 0.05 2.66 8.06 -2.91 -0.02 2.64 16
9 C -0.04 -1.72 1.00 -52.93 -0.05 -1.77 16
10 C 0.18 6.83 5.16 86.38 0.45 7.27 16
11 N -0.71 -24.89 5.42 -478.53 -2.59 -27.48 16
12 C 0.70 24.01 8.24 179.06 1.48 25.48 16
13 O -0.62 -24.70 14.70 -4.01 -0.06 -24.75 16
14 N -0.68 -17.98 5.18 -316.94 -1.64 -19.62 16
15 C 0.16 3.81 6.10 38.12 0.23 4.04 16
16 C -0.10 -2.56 8.65 22.42 0.19 -2.37 16
17 C 0.08 1.74 7.30 22.39 0.16 1.91 16
18 F -0.13 -3.11 17.18 44.97 0.77 -2.34 16
19 C 0.08 1.60 7.30 22.41 0.16 1.76 16
20 F -0.12 -2.41 17.18 44.97 0.77 -1.64 16
21 C -0.12 -2.01 10.00 22.33 0.22 -1.78 16
22 C 0.10 2.02 7.31 22.47 0.16 2.18 16
23 F -0.12 -2.69 17.06 44.97 0.77 -1.92 16
24 C -0.15 -5.13 9.92 30.59 0.30 -4.82 16
25 C -0.18 -6.59 8.33 30.59 0.25 -6.34 16
26 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16
27 H 0.03 1.37 4.81 -2.39 -0.01 1.35 16
28 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16
29 H 0.41 13.82 8.00 -92.70 -0.74 13.08 16
30 H 0.43 9.26 8.84 -92.71 -0.82 8.44 16
31 H 0.15 4.07 7.10 -2.91 -0.02 4.05 16
32 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16
33 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16
34 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16
35 H 0.09 2.95 8.14 -2.38 -0.02 2.94 16
36 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16
Total: -1.00 -62.27 322.79 3.76 -58.52
By element:
Atomic # 1 Polarization: 24.31 SS G_CDS: -0.52 Total: 23.79 kcal
Atomic # 6 Polarization: 0.65 SS G_CDS: 4.25 Total: 4.90 kcal
Atomic # 7 Polarization: -96.78 SS G_CDS: -3.93 Total: -100.71 kcal
Atomic # 8 Polarization: -24.70 SS G_CDS: -0.06 Total: -24.75 kcal
Atomic # 9 Polarization: -8.22 SS G_CDS: 2.31 Total: -5.91 kcal
Atomic # 14 Polarization: 42.46 SS G_CDS: 1.71 Total: 44.17 kcal
Total: -62.27 3.76 -58.52 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000432076280.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.936 kcal
(2) G-P(sol) polarization free energy of solvation -62.274 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.210 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.515 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.451 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds