Wall clock time and date at job start Tue Mar 31 2020 11:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00185 * 2 1 4 4 H 1.48499 * 109.46813 * 270.00026 * 3 2 1 5 5 H 1.48503 * 109.47092 * 29.99594 * 3 2 1 6 6 H 1.48497 * 109.47300 * 149.99657 * 3 2 1 7 7 C 1.37886 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99713 * 196.40545 * 7 2 1 9 9 C 1.50702 * 119.99621 * 16.68303 * 7 2 1 10 10 C 1.52998 * 115.54865 * 266.36457 * 9 7 2 11 11 N 1.46498 * 109.47487 * 304.85875 * 10 9 7 12 12 C 1.34779 * 119.99924 * 185.71169 * 11 10 9 13 13 O 1.21597 * 120.00043 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99980 * 179.97438 * 12 11 10 15 15 C 1.40331 * 120.00042 * 184.25908 * 14 12 11 16 16 C 1.38953 * 120.05568 * 219.81354 * 15 14 12 17 17 F 1.35102 * 120.03155 * 359.97438 * 16 15 14 18 18 C 1.38346 * 119.93822 * 179.69704 * 16 15 14 19 19 C 1.38455 * 120.05785 * 0.59364 * 18 16 15 20 20 F 1.35103 * 119.94340 * 179.69834 * 19 18 16 21 21 C 1.38459 * 120.11903 * 359.67988 * 19 18 16 22 22 C 1.38349 * 120.05742 * 0.02562 * 21 19 18 23 23 F 1.35097 * 120.02752 * 180.02562 * 22 21 19 24 24 C 1.53002 * 117.49471 * 120.70205 * 9 7 2 25 25 C 1.53002 * 117.50077 * 52.04330 * 9 7 2 26 26 H 0.96991 * 120.00018 * 4.97436 * 1 2 3 27 27 H 1.09008 * 109.46662 * 64.85757 * 10 9 7 28 28 H 1.09000 * 109.46931 * 184.85267 * 10 9 7 29 29 H 0.96992 * 120.00110 * 5.70781 * 11 10 9 30 30 H 0.97005 * 119.99954 * 4.25668 * 14 12 11 31 31 H 1.07998 * 119.97232 * 180.29217 * 18 16 15 32 32 H 1.07995 * 119.97202 * 180.02562 * 21 19 18 33 33 H 1.08998 * 117.49921 * 359.97438 * 24 9 7 34 34 H 1.08999 * 117.49537 * 145.01920 * 24 9 7 35 35 H 1.08990 * 117.49555 * 214.97519 * 25 9 7 36 36 H 1.08998 * 117.49617 * 359.96991 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0515 -1.2130 0.2647 9 6 1.2985 -2.4719 -0.3736 10 6 0.7211 -3.2732 0.7949 11 7 1.7810 -3.5519 1.7671 12 6 1.5314 -4.3461 2.8270 13 8 0.4263 -4.8309 2.9766 14 7 2.5066 -4.6029 3.7211 15 6 2.2739 -5.5000 4.7748 16 6 2.7690 -5.2263 6.0440 17 9 3.4755 -4.0961 6.2649 18 6 2.5329 -6.1093 7.0825 19 6 1.8145 -7.2709 6.8553 20 9 1.5904 -8.1346 7.8697 21 6 1.3249 -7.5489 5.5903 22 6 1.5530 -6.6663 4.5496 23 9 1.0746 -6.9378 3.3157 24 6 1.8452 -3.2576 -1.5672 25 6 0.5259 -2.4916 -1.6941 26 1 -0.4850 0.8368 -0.0728 27 1 -0.0699 -2.6968 1.2750 28 1 0.3119 -4.2129 0.4240 29 1 2.6624 -3.1650 1.6479 30 1 3.3693 -4.1677 3.6362 31 1 2.9134 -5.8948 8.0702 32 1 0.7645 -8.4554 5.4158 33 1 2.7152 -2.8500 -2.0821 34 1 1.7930 -4.3453 -1.5202 35 1 -0.3935 -3.0757 -1.7304 36 1 0.5279 -1.5803 -2.2919 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432227070.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:12 Heat of formation + Delta-G solvation = -123.039079 kcal Electronic energy + Delta-G solvation = -25692.406726 eV Core-core repulsion = 21341.658842 eV Total energy + Delta-G solvation = -4350.747884 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.19544 -50.09211 -50.00507 -41.44404 -39.61732 -38.52153 -35.86308 -35.05893 -33.96763 -31.69347 -30.46819 -27.98900 -27.05254 -24.57606 -24.04779 -22.95510 -22.02028 -21.31792 -19.90268 -19.64039 -18.97614 -18.55525 -17.91025 -17.32871 -17.04893 -16.95802 -16.72595 -16.48569 -16.39528 -16.28909 -16.20652 -15.85820 -15.66136 -15.32647 -15.00964 -14.48925 -13.92358 -13.69264 -13.51170 -13.48527 -13.10789 -13.06688 -12.81003 -12.71821 -12.36531 -12.04092 -11.62965 -11.51502 -11.39565 -10.78485 -10.40548 -10.17008 -10.04297 -9.90172 -9.28848 -8.14755 -6.22253 -0.39404 -0.29851 1.42096 1.43288 1.47253 1.53912 1.86540 2.18140 2.41779 2.44122 2.99829 3.10098 3.13990 3.18912 3.48727 3.57091 3.70068 4.21438 4.25252 4.47507 4.54452 4.55012 4.63947 4.64695 4.71801 4.78790 4.96469 5.01539 5.15294 5.26893 5.50645 5.54321 5.61821 5.65177 5.76403 5.83500 6.36053 6.84092 6.95751 7.43514 7.47049 8.94582 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.020747 B = 0.003393 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.300409 B = 8250.557333 C = 9161.285641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.032 3.968 3 Si 0.942 3.058 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.066 0.934 9 C 0.004 3.996 10 C 0.197 3.803 11 N -0.703 5.703 12 C 0.695 3.305 13 O -0.612 6.612 14 N -0.675 5.675 15 C 0.079 3.921 16 C 0.132 3.868 17 F -0.119 7.119 18 C -0.164 4.164 19 C 0.149 3.851 20 F -0.119 7.119 21 C -0.175 4.175 22 C 0.135 3.865 23 F -0.122 7.122 24 C -0.178 4.178 25 C -0.157 4.157 26 H 0.259 0.741 27 H 0.028 0.972 28 H 0.040 0.960 29 H 0.410 0.590 30 H 0.425 0.575 31 H 0.189 0.811 32 H 0.175 0.825 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.184 -13.452 12.818 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.170 4.170 3 Si 0.768 3.232 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.187 1.187 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.003 3.997 10 C 0.073 3.927 11 N -0.356 5.356 12 C 0.395 3.605 13 O -0.491 6.491 14 N -0.326 5.326 15 C -0.019 4.019 16 C 0.110 3.890 17 F -0.098 7.098 18 C -0.184 4.184 19 C 0.128 3.872 20 F -0.097 7.097 21 C -0.195 4.195 22 C 0.113 3.887 23 F -0.101 7.101 24 C -0.215 4.215 25 C -0.195 4.195 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.246 0.754 30 H 0.264 0.736 31 H 0.206 0.794 32 H 0.193 0.807 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.023 -13.695 12.896 20.079 hybrid contribution 0.643 1.640 -0.525 1.838 sum 7.666 -12.054 12.371 18.897 Atomic orbital electron populations 1.70215 1.07370 1.27605 1.48341 1.25627 0.95179 1.01913 0.94291 0.85813 0.79169 0.80158 0.78031 1.20441 1.22127 1.18696 1.20593 0.95752 0.90635 1.47581 0.91574 1.19076 0.99743 0.94935 0.85900 1.20523 0.87945 0.95774 0.88503 1.44865 1.16598 1.50303 1.23842 1.16085 0.83864 0.80092 0.80447 1.90920 1.23402 1.57281 1.77509 1.42296 1.16847 1.46824 1.26642 1.17685 1.05031 0.91065 0.88087 1.16672 0.97095 0.84924 0.90328 1.91563 1.75517 1.47822 1.94873 1.21115 1.02799 0.93266 1.01183 1.16637 0.98039 0.88477 0.84001 1.91579 1.92683 1.67900 1.57572 1.21133 1.05167 1.02677 0.90499 1.17068 0.97654 0.92476 0.81536 1.91592 1.85699 1.93089 1.39674 1.23078 0.96865 0.97022 1.04579 1.22402 0.94132 1.00382 1.02569 0.93209 0.95340 0.94171 0.75421 0.73566 0.79350 0.80705 0.89500 0.89519 0.90999 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.79 12.91 21.45 0.28 -49.52 16 2 C 0.03 1.63 5.25 84.66 0.44 2.08 16 3 Si 0.94 41.00 29.57 68.60 2.03 43.03 16 4 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.51 -25.05 8.10 25.60 0.21 -24.84 16 8 H 0.07 3.12 7.87 -2.91 -0.02 3.09 16 9 C 0.00 0.20 1.64 -52.93 -0.09 0.11 16 10 C 0.20 8.89 5.57 86.38 0.48 9.37 16 11 N -0.70 -27.02 5.42 -478.52 -2.60 -29.62 16 12 C 0.69 26.26 7.90 179.06 1.42 27.67 16 13 O -0.61 -27.55 13.44 -4.02 -0.05 -27.61 16 14 N -0.68 -19.35 5.19 -316.74 -1.64 -21.00 16 15 C 0.08 2.07 6.16 38.12 0.24 2.31 16 16 C 0.13 2.71 7.31 22.47 0.16 2.88 16 17 F -0.12 -2.49 17.03 44.97 0.77 -1.73 16 18 C -0.16 -2.51 10.00 22.35 0.22 -2.29 16 19 C 0.15 2.46 7.30 22.37 0.16 2.63 16 20 F -0.12 -1.87 17.26 44.97 0.78 -1.09 16 21 C -0.17 -3.41 10.00 22.35 0.22 -3.19 16 22 C 0.14 3.63 6.63 22.47 0.15 3.78 16 23 F -0.12 -4.14 14.06 44.97 0.63 -3.50 16 24 C -0.18 -6.98 9.93 30.62 0.30 -6.68 16 25 C -0.16 -7.00 9.27 30.62 0.28 -6.71 16 26 H 0.26 13.86 8.32 -92.72 -0.77 13.09 16 27 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.04 1.79 8.08 -2.39 -0.02 1.77 16 29 H 0.41 14.10 7.97 -92.71 -0.74 13.36 16 30 H 0.43 9.54 8.79 -92.70 -0.81 8.73 16 31 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 34 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -63.43 329.12 4.00 -59.43 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -0.39 Total: 24.49 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 4.21 Total: 7.10 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -3.96 Total: -100.13 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.05 Total: -27.61 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 2.17 Total: -6.32 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -63.43 4.00 -59.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432227070.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.607 kcal (2) G-P(sol) polarization free energy of solvation -63.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds