Wall clock time and date at job start Tue Mar 31 2020 10:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47011 * 266.80326 * 3 2 1 5 5 C 1.37096 * 120.00230 * 264.96880 * 4 3 2 6 6 H 1.08005 * 120.00084 * 192.13307 * 5 4 3 7 7 C 1.38949 * 119.99868 * 12.14462 * 5 4 3 8 8 N 1.31410 * 120.00504 * 16.48169 * 7 5 4 9 9 Si 1.86802 * 119.99915 * 196.49010 * 7 5 4 10 10 H 1.48500 * 109.47388 * 84.98150 * 9 7 5 11 11 H 1.48505 * 109.47007 * 204.98157 * 9 7 5 12 12 H 1.48502 * 109.46917 * 324.97911 * 9 7 5 13 13 C 1.34774 * 119.99911 * 84.96916 * 4 3 2 14 14 O 1.21295 * 120.00032 * 0.02562 * 13 4 3 15 15 C 1.50703 * 120.00210 * 180.02562 * 13 4 3 16 16 S 1.81398 * 109.47184 * 180.02562 * 15 13 4 17 17 C 1.81406 * 102.99847 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.46969 * 180.02562 * 17 16 15 19 19 C 1.38365 * 119.85139 * 90.00201 * 18 17 16 20 20 C 1.37945 * 120.15299 * 180.02562 * 19 18 17 21 21 C 1.39635 * 119.84498 * 359.97438 * 20 19 18 22 22 C 1.43205 * 120.14503 * 180.02562 * 21 20 19 23 23 N 9.37322 * 130.12535 * 230.71246 * 15 1 2 24 24 C 1.39629 * 119.70207 * 0.27422 * 21 20 19 25 25 C 1.37955 * 119.84352 * 359.46945 * 24 21 20 26 26 H 4.40640 * 5.51410 * 179.97438 * 4 1 2 27 27 H 1.08997 * 109.46601 * 146.80540 * 3 2 1 28 28 H 1.09001 * 109.47193 * 26.80138 * 3 2 1 29 29 H 0.96995 * 120.00465 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47365 * 59.99758 * 15 13 4 31 31 H 1.09003 * 109.46517 * 299.99897 * 15 13 4 32 32 H 1.09001 * 109.47265 * 60.00095 * 17 16 15 33 33 H 1.08997 * 109.47016 * 299.99957 * 17 16 15 34 34 H 1.07998 * 119.91873 * 0.02562 * 19 18 17 35 35 H 1.07996 * 120.07638 * 179.97438 * 20 19 18 36 36 H 1.07994 * 120.07697 * 179.70217 * 24 21 20 37 37 H 1.08000 * 119.92040 * 180.22600 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.0779 1.3791 5 6 3.4604 1.2930 1.9238 6 1 3.9999 1.3386 2.8584 7 6 3.0968 2.4659 1.2736 8 7 2.1805 2.4384 0.3321 9 14 3.9105 4.0820 1.7379 10 1 5.1837 4.2286 0.9878 11 1 3.0037 5.2081 1.3988 12 1 4.1908 4.0941 3.1961 13 6 3.2629 -1.0456 2.1123 14 8 2.9749 -2.1207 1.6302 15 6 3.7647 -0.9662 3.5311 16 16 3.8264 -2.6327 4.2449 17 6 4.4439 -2.3346 5.9244 18 6 4.5535 -3.6457 6.6593 19 6 5.7307 -4.3705 6.6030 20 6 5.8377 -5.5716 7.2729 21 6 4.7545 -6.0553 8.0095 22 6 4.8586 -7.3012 8.7078 23 7 4.9314 -8.2867 9.2675 24 6 3.5676 -5.3213 8.0577 25 6 3.4763 -4.1190 7.3873 26 1 -1.0500 0.0002 0.0000 27 1 3.0089 0.8608 -0.5626 28 1 3.0098 -0.9164 -0.4634 29 1 1.9269 3.2571 -0.1220 30 1 3.0918 -0.3429 4.1201 31 1 4.7638 -0.5306 3.5392 32 1 3.7541 -1.6774 6.4539 33 1 5.4259 -1.8646 5.8723 34 1 6.5678 -3.9949 6.0333 35 1 6.7570 -6.1365 7.2278 36 1 2.7245 -5.6921 8.6216 37 1 2.5601 -3.5485 7.4268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490994300.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:50 Heat of formation + Delta-G solvation = 75.590010 kcal Electronic energy + Delta-G solvation = -21352.248489 eV Core-core repulsion = 17994.723420 eV Total energy + Delta-G solvation = -3357.525069 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51034 -40.40909 -37.62205 -37.04826 -33.92606 -33.83966 -33.37329 -32.01303 -30.95616 -28.69603 -27.95638 -26.25694 -23.70036 -23.44852 -21.22882 -19.88477 -19.73646 -18.52440 -18.01793 -17.18178 -16.70033 -16.36736 -16.31535 -16.23947 -15.93502 -15.46325 -15.11438 -14.88709 -14.67769 -14.44676 -14.43716 -14.16363 -13.89304 -13.79151 -13.56431 -13.31542 -13.03781 -12.94699 -12.74906 -12.51206 -12.38692 -12.09711 -11.96661 -11.29911 -11.23777 -10.86574 -10.61765 -10.43163 -9.93408 -9.89827 -9.65974 -8.53530 -8.25922 -5.91529 -0.39762 0.44849 0.75743 1.44267 1.52620 1.59511 1.62165 1.69098 1.86612 2.04939 2.10151 2.34024 2.39395 2.84951 2.96104 3.10083 3.16939 3.69423 3.84470 3.91456 4.00932 4.21127 4.27947 4.32284 4.39681 4.53554 4.63975 4.68497 4.79545 4.84280 5.08171 5.10213 5.24609 5.35410 5.39687 5.42539 5.58563 5.72612 5.86521 6.36592 6.42040 7.07568 7.10583 7.48442 7.89961 8.71782 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.022549 B = 0.002581 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.446631 B =10845.149201 C =11591.853694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.147 4.147 3 C 0.237 3.763 4 N -0.444 5.444 5 C -0.359 4.359 6 H 0.121 0.879 7 C -0.006 4.006 8 N -0.883 5.883 9 Si 0.994 3.006 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.256 1.256 13 C 0.457 3.543 14 O -0.620 6.620 15 C -0.084 4.084 16 S -0.231 6.231 17 C -0.061 4.061 18 C -0.042 4.042 19 C -0.106 4.106 20 C -0.065 4.065 21 C -0.042 4.042 22 C 0.282 3.718 23 N -0.468 5.468 24 C -0.066 4.066 25 C -0.108 4.108 26 H 0.236 0.764 27 H 0.115 0.885 28 H 0.058 0.942 29 H 0.270 0.730 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 -3.925 12.852 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.148 4.148 3 C 0.114 3.886 4 N -0.162 5.162 5 C -0.485 4.485 6 H 0.138 0.862 7 C -0.208 4.208 8 N -0.521 5.521 9 Si 0.818 3.182 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.180 1.180 13 C 0.246 3.754 14 O -0.508 6.508 15 C -0.235 4.235 16 S -0.002 6.002 17 C -0.208 4.208 18 C -0.045 4.045 19 C -0.126 4.126 20 C -0.085 4.085 21 C -0.046 4.046 22 C -0.033 4.033 23 N -0.144 5.144 24 C -0.086 4.086 25 C -0.128 4.128 26 H 0.253 0.747 27 H 0.133 0.867 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.608 -6.719 12.822 15.524 hybrid contribution 0.047 2.454 0.022 2.455 sum 5.655 -4.264 12.844 14.668 Atomic orbital electron populations 1.25181 0.96434 1.05659 1.00638 1.23646 0.95279 0.96133 0.99741 1.18255 0.84475 1.00850 0.84981 1.43899 1.55360 1.06384 1.10541 1.20124 1.36533 0.81907 1.09956 0.86197 1.26159 0.95358 1.02786 0.96538 1.70216 1.26953 1.29624 1.25311 0.84919 0.77634 0.76281 0.79385 1.19802 1.21703 1.17987 1.20018 0.83574 0.83894 0.87950 1.90564 1.57448 1.29437 1.73368 1.23184 1.06174 0.98024 0.96093 1.87732 1.87621 1.11966 1.12851 1.22539 1.06216 0.98241 0.93854 1.19595 0.94669 0.94876 0.95322 1.21221 0.98210 0.94197 0.98942 1.21344 0.97872 0.95492 0.93812 1.16117 0.97337 0.89411 1.01780 1.25915 0.92357 0.92659 0.92344 1.81264 1.09089 1.12722 1.11282 1.21322 0.96205 0.93501 0.97597 1.21210 0.98942 0.96064 0.96549 0.74744 0.86727 0.92392 0.91943 0.87441 0.86509 0.87478 0.87072 0.83158 0.83036 0.83231 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.54 19.25 74.32 1.43 -10.11 16 2 C -0.15 -7.25 11.87 31.13 0.37 -6.88 16 3 C 0.24 11.66 5.08 84.57 0.43 12.09 16 4 N -0.44 -21.51 2.60 -645.41 -1.68 -23.18 16 5 C -0.36 -16.48 9.27 84.04 0.78 -15.70 16 6 H 0.12 4.89 6.45 -2.91 -0.02 4.87 16 7 C -0.01 -0.26 5.07 84.93 0.43 0.17 16 8 N -0.88 -43.58 9.04 21.66 0.20 -43.38 16 9 Si 0.99 36.02 29.58 68.60 2.03 38.05 16 10 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 11 H -0.29 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.26 -8.61 7.11 99.48 0.71 -7.91 16 13 C 0.46 21.25 7.60 87.66 0.67 21.92 16 14 O -0.62 -32.74 15.53 -3.08 -0.05 -32.79 16 15 C -0.08 -2.95 4.83 71.24 0.34 -2.60 16 16 S -0.23 -7.16 20.86 -56.49 -1.18 -8.34 16 17 C -0.06 -1.13 6.06 71.23 0.43 -0.70 16 18 C -0.04 -0.70 5.15 -19.80 -0.10 -0.80 16 19 C -0.11 -1.52 9.68 22.23 0.22 -1.30 16 20 C -0.06 -0.87 9.76 22.54 0.22 -0.65 16 21 C -0.04 -0.64 5.73 -21.36 -0.12 -0.76 16 22 C 0.28 5.40 15.33 88.34 1.35 6.76 16 23 N -0.47 -11.37 18.54 19.00 0.35 -11.02 16 24 C -0.07 -0.91 9.76 22.54 0.22 -0.69 16 25 C -0.11 -1.61 9.68 22.23 0.22 -1.40 16 26 H 0.24 8.04 7.80 -4.42 -0.03 8.00 16 27 H 0.12 5.73 5.91 -2.39 -0.01 5.72 16 28 H 0.06 2.82 7.58 -2.39 -0.02 2.80 16 29 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 30 H 0.11 3.55 8.06 -2.39 -0.02 3.53 16 31 H 0.12 3.57 7.74 -2.39 -0.02 3.55 16 32 H 0.11 1.69 8.08 -2.39 -0.02 1.67 16 33 H 0.11 1.66 8.08 -2.39 -0.02 1.64 16 34 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -65.80 351.81 7.65 -58.15 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 1.09 Total: 23.19 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 6.88 Total: -0.67 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -1.13 Total: -77.59 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.05 Total: -32.79 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -1.18 Total: -8.34 kcal Total: -65.80 7.65 -58.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490994300.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.744 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds