Wall clock time and date at job start Tue Mar 31 2020 10:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47233 * 192.60806 * 3 2 1 5 5 C 1.36873 * 119.99599 * 96.45870 * 4 3 2 6 6 H 1.08000 * 119.99916 * 211.64897 * 5 4 3 7 7 C 1.39005 * 120.00599 * 31.65784 * 5 4 3 8 8 N 1.31395 * 119.99742 * 21.32814 * 7 5 4 9 9 Si 1.86797 * 120.00428 * 201.33340 * 7 5 4 10 10 H 1.48497 * 109.47179 * 59.99651 * 9 7 5 11 11 H 1.48499 * 109.47459 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47209 * 299.99692 * 9 7 5 13 13 C 1.34769 * 119.99900 * 276.45920 * 4 3 2 14 14 O 1.21742 * 120.00302 * 185.82795 * 13 4 3 15 15 C 1.46545 * 120.00208 * 5.83214 * 13 4 3 16 16 C 1.37996 * 126.24124 * 1.43477 * 15 13 4 17 17 C 1.39806 * 107.08728 * 180.22167 * 16 15 13 18 18 C 1.35494 * 107.87562 * 359.77215 * 17 16 15 19 19 N 1.35579 * 108.88124 * 0.02562 * 18 17 16 20 20 C 1.46502 * 125.68176 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47214 * 262.74363 * 20 19 18 22 22 C 1.33392 * 125.20260 * 83.94722 * 21 20 19 23 23 C 1.38422 * 114.91518 * 179.97438 * 22 21 20 24 24 C 1.33388 * 114.92669 * 0.24975 * 23 22 21 25 25 S 1.75884 * 125.20148 * 263.90587 * 21 20 19 26 26 H 4.40642 * 5.51500 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.46748 * 72.60635 * 3 2 1 28 28 H 1.09001 * 109.47258 * 312.61145 * 3 2 1 29 29 H 0.96998 * 120.00148 * 180.02562 * 8 7 5 30 30 H 1.08000 * 126.45585 * 359.97438 * 16 15 13 31 31 H 1.07998 * 126.06607 * 179.79974 * 17 16 15 32 32 H 1.07999 * 125.55473 * 180.02562 * 18 17 16 33 33 H 1.09003 * 109.47337 * 142.73791 * 20 19 18 34 34 H 1.09005 * 109.47002 * 22.74227 * 20 19 18 35 35 H 1.07994 * 122.54052 * 359.97438 * 22 21 20 36 36 H 1.07997 * 122.53764 * 179.97438 * 23 22 21 37 37 H 1.07997 * 125.20769 * 179.75794 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3488 0.3015 5 6 3.4874 1.6780 1.5821 6 1 3.3545 2.6897 1.9358 7 6 4.0180 0.7104 2.4274 8 7 4.5672 -0.3719 1.9240 9 14 3.9500 0.9486 4.2788 10 1 2.5342 1.0654 4.7112 11 1 4.5778 -0.2171 4.9513 12 1 4.6834 2.1865 4.6459 13 6 3.2342 2.2646 -0.6821 14 8 3.7380 3.3494 -0.4547 15 6 2.7369 1.9549 -2.0253 16 6 2.1213 0.7838 -2.4174 17 6 1.8174 0.9143 -3.7758 18 6 2.2380 2.1370 -4.1805 19 7 2.7962 2.7803 -3.1256 20 6 3.3714 4.1274 -3.1532 21 6 4.8659 4.0322 -3.3220 22 6 5.5012 3.8980 -4.4872 23 6 6.8807 3.8319 -4.3951 24 6 7.3656 3.9071 -3.1547 25 16 6.0393 4.0820 -2.0127 26 1 -1.0502 -0.0003 -0.0003 27 1 3.0094 -0.3064 -0.9807 28 1 3.0097 -0.6949 0.7563 29 1 4.9371 -1.0474 2.5137 30 1 1.9169 -0.0738 -1.7935 31 1 1.3328 0.1723 -4.3930 32 1 2.1440 2.5343 -5.1803 33 1 3.1432 4.6392 -2.2182 34 1 2.9466 4.6869 -3.9866 35 1 4.9787 3.8450 -5.4309 36 1 7.5162 3.7230 -5.2615 37 1 8.4124 3.8689 -2.8920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491015123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:31 Heat of formation + Delta-G solvation = 150.840535 kcal Electronic energy + Delta-G solvation = -23665.608090 eV Core-core repulsion = 20311.346128 eV Total energy + Delta-G solvation = -3354.261961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.87192 -38.15726 -37.46354 -35.40965 -33.22069 -32.57146 -31.27733 -29.22004 -28.78332 -26.57617 -25.66666 -24.83879 -22.83520 -21.33071 -20.30014 -19.13954 -18.56630 -18.02178 -17.16404 -16.81309 -16.13615 -15.42121 -15.21809 -14.76171 -14.36340 -14.12714 -13.91269 -13.47237 -13.27899 -12.83721 -12.63397 -12.55107 -12.43810 -12.26830 -11.90542 -11.73118 -11.57800 -11.22748 -11.13060 -10.75082 -10.45316 -10.38624 -10.11023 -9.70413 -9.55469 -8.98324 -8.62115 -8.50086 -8.17029 -8.03373 -7.72048 -7.53924 -6.44513 -4.02338 1.21555 2.05034 2.25219 2.49320 2.87704 3.16326 3.21619 3.22912 3.32624 3.36842 3.56328 3.64009 4.11472 4.36089 4.90163 4.93535 4.97931 5.06454 5.27792 5.34961 5.40564 5.55575 5.73599 5.76467 5.82810 5.95544 6.01299 6.30677 6.34335 6.50182 6.64751 6.69085 6.69929 6.77052 7.03408 7.34825 7.49115 7.59321 7.75994 8.10269 8.36086 8.39702 9.05182 9.26037 9.87394 10.58780 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.005878 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.963926 B = 4762.267718 C = 6300.523337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.161 4.161 3 C 0.171 3.829 4 N -0.413 5.413 5 C -0.299 4.299 6 H 0.098 0.902 7 C 0.035 3.965 8 N -0.865 5.865 9 Si 0.923 3.077 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.520 3.480 14 O -0.582 6.582 15 C -0.008 4.008 16 C -0.186 4.186 17 C -0.208 4.208 18 C -0.011 4.011 19 N -0.412 5.412 20 C 0.180 3.820 21 C -0.210 4.210 22 C -0.131 4.131 23 C -0.148 4.148 24 C -0.247 4.247 25 S 0.222 5.778 26 H 0.208 0.792 27 H 0.098 0.902 28 H 0.141 0.859 29 H 0.273 0.727 30 H 0.168 0.832 31 H 0.132 0.868 32 H 0.156 0.844 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 3.402 -10.721 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.162 4.162 3 C 0.048 3.952 4 N -0.129 5.129 5 C -0.427 4.427 6 H 0.115 0.885 7 C -0.169 4.169 8 N -0.503 5.503 9 Si 0.750 3.250 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.311 3.689 14 O -0.468 6.468 15 C -0.122 4.122 16 C -0.211 4.211 17 C -0.233 4.233 18 C -0.144 4.144 19 N -0.086 5.086 20 C 0.057 3.943 21 C -0.329 4.329 22 C -0.164 4.164 23 C -0.179 4.179 24 C -0.384 4.384 25 S 0.489 5.511 26 H 0.225 0.775 27 H 0.115 0.885 28 H 0.158 0.842 29 H 0.083 0.917 30 H 0.184 0.816 31 H 0.150 0.850 32 H 0.174 0.826 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.646 4.274 -8.874 9.871 hybrid contribution -0.119 -0.345 -0.914 0.984 sum -0.765 3.929 -9.788 10.575 Atomic orbital electron populations 1.24623 0.95629 1.01649 1.04087 1.24101 0.95356 0.99234 0.97559 1.19566 0.81707 0.89280 1.04656 1.43005 1.53892 1.09130 1.06909 1.19476 1.39825 0.98104 0.85292 0.88462 1.25367 0.94445 0.96249 1.00884 1.69786 1.33883 1.10500 1.36164 0.86035 0.78810 0.78107 0.82090 1.19779 1.20768 1.19583 1.16978 0.83135 0.86639 0.82180 1.90543 1.49269 1.24308 1.82695 1.20659 1.09250 0.92478 0.89808 1.22561 1.03877 0.98577 0.96106 1.20761 1.09069 0.97286 0.96213 1.21746 1.05259 0.95020 0.92356 1.43925 1.43791 1.12821 1.08070 1.20183 0.86887 0.82139 1.05106 1.24654 0.99353 1.11639 0.97242 1.19982 0.94081 1.04477 0.97834 1.19960 0.94765 1.05852 0.97361 1.26132 1.04231 1.09869 0.98196 1.85521 0.92739 1.66928 1.05957 0.77531 0.88492 0.84191 0.91699 0.81566 0.85007 0.82621 0.86948 0.88536 0.85176 0.85241 0.82535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.39 19.25 29.55 0.57 -3.82 16 2 C -0.16 -3.36 10.63 -37.12 -0.39 -3.75 16 3 C 0.17 3.88 4.99 -6.83 -0.03 3.85 16 4 N -0.41 -10.54 2.54 -119.47 -0.30 -10.84 16 5 C -0.30 -8.09 9.00 -15.02 -0.14 -8.23 16 6 H 0.10 2.72 7.71 -52.49 -0.40 2.32 16 7 C 0.03 0.89 4.96 -17.45 -0.09 0.81 16 8 N -0.87 -22.44 11.12 55.50 0.62 -21.83 16 9 Si 0.92 20.17 29.60 -169.99 -5.03 15.13 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.52 12.88 7.52 -12.92 -0.10 12.78 16 14 O -0.58 -14.97 12.34 5.15 0.06 -14.91 16 15 C -0.01 -0.18 6.75 -81.98 -0.55 -0.73 16 16 C -0.19 -3.64 8.02 -39.08 -0.31 -3.95 16 17 C -0.21 -3.45 10.81 -39.98 -0.43 -3.88 16 18 C -0.01 -0.17 11.37 -16.88 -0.19 -0.36 16 19 N -0.41 -7.46 2.75 -114.13 -0.31 -7.78 16 20 C 0.18 2.91 5.88 -5.19 -0.03 2.87 16 21 C -0.21 -3.48 6.05 -36.00 -0.22 -3.70 16 22 C -0.13 -1.90 10.05 -41.21 -0.41 -2.31 16 23 C -0.15 -2.07 10.18 -41.21 -0.42 -2.49 16 24 C -0.25 -3.70 11.23 29.04 0.33 -3.37 16 25 S 0.22 4.02 21.08 -107.50 -2.27 1.75 16 26 H 0.21 2.88 7.80 -54.08 -0.42 2.46 16 27 H 0.10 2.09 4.99 -51.93 -0.26 1.83 16 28 H 0.14 3.41 5.15 -51.93 -0.27 3.14 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.17 3.23 3.15 -52.49 -0.17 3.07 16 31 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.11 2.04 6.73 -51.93 -0.35 1.69 16 34 H 0.10 1.19 8.12 -51.93 -0.42 0.76 16 35 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -30.13 329.70 -8.23 -38.36 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -3.54 Total: 11.43 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -2.43 Total: -16.29 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.00 Total: -40.45 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.06 Total: -14.91 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.13 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -2.27 Total: 1.75 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.13 -8.23 -38.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491015123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.204 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds