Wall clock time and date at job start Tue Mar 31 2020 10:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76206 * 102.99597 * 2 1 4 4 C 1.39188 * 119.62792 * 179.97438 * 3 2 1 5 5 C 1.38208 * 119.16887 * 179.97438 * 4 3 2 6 6 C 1.39482 * 118.45398 * 0.02562 * 5 4 3 7 7 N 1.40041 * 120.40574 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00045 * 37.73112 * 7 6 5 9 9 O 1.21609 * 120.00067 * 5.43403 * 8 7 6 10 10 C 1.47589 * 119.99806 * 185.43022 * 8 7 6 11 11 C 1.40041 * 119.89654 * 359.72871 * 10 8 7 12 12 C 1.36300 * 120.10136 * 179.71476 * 11 10 8 13 13 C 1.40903 * 119.89667 * 0.57668 * 12 11 10 14 14 C 1.41083 * 120.10308 * 179.66845 * 13 12 11 15 15 H 1.08003 * 119.99385 * 158.31410 * 14 13 12 16 16 C 1.40226 * 120.00191 * 338.32755 * 14 13 12 17 17 N 1.30648 * 119.99607 * 329.44959 * 16 14 13 18 18 Si 1.86792 * 120.00011 * 149.45439 * 16 14 13 19 19 H 1.48501 * 109.47370 * 94.98014 * 18 16 14 20 20 H 1.48497 * 109.47100 * 214.98369 * 18 16 14 21 21 H 1.48502 * 109.47283 * 334.98441 * 18 16 14 22 22 C 1.40905 * 119.79277 * 359.69995 * 13 12 11 23 23 C 1.36300 * 119.89236 * 359.97438 * 22 13 12 24 24 C 1.38680 * 119.19370 * 359.97438 * 6 5 4 25 25 N 1.31949 * 120.75203 * 0.02562 * 24 6 5 26 26 H 1.08998 * 109.47411 * 299.99694 * 1 2 3 27 27 H 1.09001 * 109.47287 * 60.00128 * 1 2 3 28 28 H 1.09000 * 109.46525 * 180.02562 * 1 2 3 29 29 H 1.08001 * 120.41965 * 0.02562 * 4 3 2 30 30 H 1.08006 * 120.77633 * 179.72651 * 5 4 3 31 31 H 0.97004 * 119.99420 * 217.73441 * 7 6 5 32 32 H 1.07998 * 119.95026 * 359.97438 * 11 10 8 33 33 H 1.08003 * 120.05451 * 180.27586 * 12 11 10 34 34 H 0.97003 * 119.99528 * 180.02562 * 17 16 14 35 35 H 1.07996 * 120.05248 * 179.97438 * 22 13 12 36 36 H 1.08000 * 119.94638 * 180.02562 * 23 22 13 37 37 H 1.07991 * 119.61953 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5440 2.1153 0.0005 5 6 3.8440 3.4644 0.0000 6 6 2.7911 4.3794 -0.0005 7 7 3.0484 5.7559 -0.0006 8 6 4.0799 6.2487 -0.7144 9 8 4.7262 5.5135 -1.4360 10 6 4.4250 7.6806 -0.6205 11 6 3.6757 8.5264 0.2067 12 6 3.9943 9.8483 0.3011 13 6 5.0720 10.3659 -0.4446 14 6 5.4012 11.7349 -0.3555 15 1 6.3925 12.0703 -0.6227 16 6 4.4416 12.6599 0.0801 17 7 3.1745 12.4470 -0.1565 18 14 4.9751 14.1966 0.9984 19 1 5.1111 15.3234 0.0408 20 1 3.9572 14.5387 2.0241 21 1 6.2812 13.9493 1.6604 22 6 5.8194 9.5121 -1.2800 23 6 5.4974 8.1903 -1.3628 24 6 1.4864 3.9092 -0.0010 25 7 1.2361 2.6137 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 4.3345 1.3795 0.0005 30 1 4.8697 3.8025 0.0048 31 1 2.4841 6.3547 0.5133 32 1 2.8466 8.1298 0.7740 33 1 3.4187 10.4990 0.9427 34 1 2.5108 13.0871 0.1446 35 1 6.6459 9.9045 -1.8537 36 1 6.0700 7.5350 -2.0026 37 1 0.6661 4.6115 -0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536131510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:11 Heat of formation + Delta-G solvation = 10.287161 kcal Electronic energy + Delta-G solvation = -21750.055200 eV Core-core repulsion = 18389.698388 eV Total energy + Delta-G solvation = -3360.356813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51932 -38.91464 -37.26141 -34.69546 -34.07871 -32.25990 -30.86675 -29.69236 -29.52681 -28.90712 -26.13548 -23.99311 -23.46272 -21.87443 -21.07979 -19.83823 -18.20277 -17.80176 -17.63899 -16.68320 -16.08017 -15.56547 -15.19128 -14.59072 -14.43062 -14.17840 -14.12395 -13.97048 -13.50731 -13.43439 -13.33378 -12.96371 -12.73527 -12.33042 -12.23661 -12.06429 -11.46699 -11.40363 -11.16568 -10.85480 -10.72537 -10.66612 -10.28790 -9.88768 -9.79180 -9.67717 -9.37078 -9.16059 -8.78690 -7.88551 -7.78274 -7.41370 -7.29564 -4.71699 0.93299 1.25294 1.39522 2.08772 2.14809 2.77303 2.85931 2.91951 2.93336 3.41920 3.52752 3.61660 3.80343 4.34903 4.50426 4.91380 4.95382 5.03931 5.04227 5.07331 5.41779 5.56074 5.62220 5.78411 5.85286 5.90765 6.12217 6.17921 6.33233 6.62251 6.67299 6.81506 6.94019 6.97569 7.27845 7.47609 7.57849 7.68351 7.71551 7.89124 7.94873 8.22556 8.46394 8.60852 8.77483 9.62850 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.037174 B = 0.002312 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.038763 B =12109.225034 C =12635.242679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.092 6.092 3 C 0.090 3.910 4 C -0.126 4.126 5 C -0.064 4.064 6 C 0.120 3.880 7 N -0.681 5.681 8 C 0.571 3.429 9 O -0.557 6.557 10 C -0.299 4.299 11 C -0.055 4.055 12 C -0.189 4.189 13 C 0.130 3.870 14 C -0.437 4.437 15 H 0.090 0.910 16 C 0.082 3.918 17 N -0.747 5.747 18 Si 0.906 3.094 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.254 1.254 22 C -0.242 4.242 23 C -0.013 4.013 24 C 0.080 3.920 25 N -0.471 5.471 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.140 0.860 30 H 0.148 0.852 31 H 0.411 0.589 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.291 0.709 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.030 -12.412 3.933 13.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.145 5.855 3 C -0.160 4.160 4 C -0.152 4.152 5 C -0.093 4.093 6 C 0.019 3.981 7 N -0.327 5.327 8 C 0.369 3.631 9 O -0.438 6.438 10 C -0.303 4.303 11 C -0.074 4.074 12 C -0.208 4.208 13 C 0.126 3.874 14 C -0.463 4.463 15 H 0.108 0.892 16 C -0.144 4.144 17 N -0.368 5.368 18 Si 0.729 3.271 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.177 1.177 22 C -0.262 4.262 23 C -0.032 4.032 24 C -0.083 4.083 25 N -0.183 5.183 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.157 0.843 30 H 0.166 0.834 31 H 0.248 0.752 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.029 -14.072 3.429 15.332 hybrid contribution -0.287 2.561 0.587 2.643 sum -5.316 -11.511 4.016 13.300 Atomic orbital electron populations 1.23397 0.93815 1.05746 1.06628 1.85368 1.07762 0.99755 1.92579 1.22762 0.92128 0.97834 1.03258 1.21522 0.95553 0.96241 1.01852 1.21537 1.00302 0.91545 0.95916 1.18797 0.94228 0.85336 0.99699 1.43660 1.33845 1.04556 1.50620 1.18788 0.77910 0.89015 0.77373 1.90671 1.52114 1.60901 1.40091 1.18646 1.06996 0.90434 1.14255 1.20397 0.96416 0.94219 0.96359 1.20757 1.02104 0.93759 1.04186 1.17743 0.89581 0.92934 0.87116 1.19888 0.98836 0.91709 1.35842 0.89207 1.26173 0.94145 1.00705 0.93353 1.69811 1.02515 1.35170 1.29282 0.86312 0.80631 0.80157 0.80029 1.19020 1.19488 1.17722 1.20655 1.05762 0.93714 1.06021 1.20343 0.93613 0.94650 0.94577 1.22514 0.94508 0.91753 0.99484 1.67887 1.34566 1.01887 1.13987 0.89601 0.89572 0.88193 0.84256 0.83406 0.75167 0.89349 0.87169 0.89782 0.88246 0.88018 0.82319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 10.01 101.05 1.01 -0.09 16 2 S -0.09 -1.02 22.55 -107.50 -2.42 -3.44 16 3 C 0.09 1.23 7.00 -16.95 -0.12 1.11 16 4 C -0.13 -1.71 9.83 -39.24 -0.39 -2.09 16 5 C -0.06 -0.98 8.75 -39.13 -0.34 -1.32 16 6 C 0.12 1.84 6.21 -83.48 -0.52 1.32 16 7 N -0.68 -10.97 5.29 -10.65 -0.06 -11.03 16 8 C 0.57 11.46 7.50 -12.45 -0.09 11.37 16 9 O -0.56 -12.43 14.37 5.27 0.08 -12.36 16 10 C -0.30 -6.44 5.89 -104.73 -0.62 -7.06 16 11 C -0.05 -1.14 9.47 -39.60 -0.37 -1.51 16 12 C -0.19 -4.37 8.72 -39.27 -0.34 -4.71 16 13 C 0.13 3.14 5.58 -106.80 -0.60 2.55 16 14 C -0.44 -10.32 8.96 -37.76 -0.34 -10.66 16 15 H 0.09 2.02 8.00 -52.48 -0.42 1.60 16 16 C 0.08 1.80 4.83 -17.31 -0.08 1.72 16 17 N -0.75 -16.92 11.61 55.56 0.65 -16.28 16 18 Si 0.91 16.18 29.65 -169.99 -5.04 11.14 16 19 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 20 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 21 H -0.25 -4.56 7.11 56.52 0.40 -4.16 16 22 C -0.24 -5.60 9.73 -39.27 -0.38 -5.98 16 23 C -0.01 -0.28 9.52 -39.61 -0.38 -0.66 16 24 C 0.08 1.11 11.11 -17.34 -0.19 0.91 16 25 N -0.47 -6.65 9.41 -11.96 -0.11 -6.76 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16 29 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.15 2.40 6.86 -52.48 -0.36 2.04 16 31 H 0.41 5.63 6.84 -40.82 -0.28 5.35 16 32 H 0.09 1.52 6.38 -52.49 -0.34 1.18 16 33 H 0.11 2.56 6.42 -52.48 -0.34 2.22 16 34 H 0.29 5.85 8.29 -40.82 -0.34 5.51 16 35 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 36 H 0.10 2.20 7.63 -52.49 -0.40 1.80 16 37 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -27.26 336.35 -9.40 -36.66 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -3.80 Total: 12.11 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -3.75 Total: -15.11 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.48 Total: -34.07 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 16.18 SS G_CDS: -5.04 Total: 11.14 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -2.42 Total: -3.44 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.26 -9.40 -36.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536131510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.946 kcal (2) G-P(sol) polarization free energy of solvation -27.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds