Wall clock time and date at job start Tue Mar 31 2020 10:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81408 * 102.99966 * 2 1 4 4 C 1.50705 * 109.47023 * 180.02562 * 3 2 1 5 5 C 1.33638 * 126.03648 * 89.96159 * 4 3 2 6 6 N 1.31778 * 114.49589 * 179.79025 * 5 4 3 7 7 C 1.29026 * 117.13031 * 0.47007 * 6 5 4 8 8 C 1.50696 * 124.91910 * 179.81644 * 7 6 5 9 9 N 1.46900 * 109.47010 * 89.69609 * 8 7 6 10 10 C 1.47906 * 111.00463 * 69.87265 * 9 8 7 11 11 C 1.53996 * 107.06117 * 214.15679 * 10 9 8 12 12 C 1.54591 * 105.13656 * 1.22236 * 11 10 9 13 13 O 1.42902 * 110.72622 * 263.60022 * 12 11 10 14 14 C 1.50706 * 110.72503 * 140.49476 * 12 11 10 15 15 H 1.07995 * 119.99916 * 241.45455 * 14 12 11 16 16 C 1.37879 * 119.99423 * 61.44873 * 14 12 11 17 17 N 1.31515 * 120.00643 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99609 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47188 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47458 * 120.00267 * 18 16 14 21 21 H 1.48506 * 109.47329 * 240.00227 * 18 16 14 22 22 C 1.48534 * 111.00336 * 312.47554 * 9 8 7 23 23 S 1.70978 * 110.16095 * 359.54810 * 7 6 5 24 24 H 1.09002 * 109.47550 * 60.00023 * 1 2 3 25 25 H 1.09006 * 109.47298 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47447 * 299.99626 * 1 2 3 27 27 H 1.08998 * 109.46685 * 59.99895 * 3 2 1 28 28 H 1.08993 * 109.46740 * 300.00086 * 3 2 1 29 29 H 1.07998 * 122.74916 * 0.02573 * 5 4 3 30 30 H 1.08993 * 109.47221 * 329.69619 * 8 7 6 31 31 H 1.08998 * 109.46962 * 209.69071 * 8 7 6 32 32 H 1.09003 * 109.91125 * 333.50977 * 10 9 8 33 33 H 1.08999 * 109.91852 * 94.80110 * 10 9 8 34 34 H 1.08993 * 110.30544 * 120.13627 * 11 10 9 35 35 H 1.08995 * 110.30651 * 242.21227 * 11 10 9 36 36 H 0.96706 * 113.99903 * 298.54500 * 13 12 11 37 37 H 0.96995 * 119.99871 * 179.97438 * 17 16 14 38 38 H 1.09004 * 110.66939 * 278.16097 * 22 9 8 39 39 H 1.09002 * 110.66619 * 41.28493 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7194 1.9374 -0.0006 5 6 4.5002 2.0254 -1.0816 6 7 5.7827 2.1754 -0.8185 7 6 6.1284 2.2095 0.4241 8 6 7.5416 2.3697 0.9223 9 7 7.8450 3.7980 1.0834 10 6 7.0907 4.3756 2.2170 11 6 6.7465 5.8278 1.8375 12 6 7.3226 6.0209 0.4160 13 8 8.6124 6.6337 0.4720 14 6 6.3831 6.8371 -0.4339 15 1 5.9544 6.4094 -1.3282 16 6 6.0708 8.1297 -0.0697 17 7 6.5931 8.6506 1.0191 18 14 4.9056 9.1411 -1.1227 19 1 4.4584 8.3309 -2.2842 20 1 3.7256 9.5387 -0.3135 21 1 5.6060 10.3576 -1.6075 22 6 7.4280 4.5694 -0.1154 23 16 4.7500 2.0541 1.4237 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8030 2.2371 0.8900 28 1 1.8030 2.2371 -0.8899 29 1 4.1115 1.9812 -2.0882 30 1 8.2325 1.9305 0.2027 31 1 7.6477 1.8652 1.8826 32 1 6.1749 3.8077 2.3813 33 1 7.7053 4.3627 3.1171 34 1 5.6661 5.9710 1.8305 35 1 7.2152 6.5222 2.5348 36 1 8.6121 7.5153 0.8696 37 1 6.3736 9.5601 1.2751 38 1 8.1826 4.5003 -0.8990 39 1 6.4611 4.2218 -0.4794 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592526330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:07 Heat of formation + Delta-G solvation = -15.070132 kcal Electronic energy + Delta-G solvation = -22130.881646 eV Core-core repulsion = 18904.869210 eV Total energy + Delta-G solvation = -3226.012436 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18436 -39.78848 -36.80158 -34.18972 -33.97689 -32.09287 -29.89756 -29.83028 -28.85805 -27.08901 -25.75400 -24.40705 -22.13175 -21.45527 -20.30018 -19.12837 -19.03851 -17.43752 -17.05748 -17.01247 -16.55529 -16.34351 -15.69634 -15.53622 -15.12947 -15.03720 -14.90754 -14.71744 -14.29943 -14.04150 -13.82632 -13.73695 -13.46428 -13.25436 -13.03145 -12.85557 -12.61912 -12.44752 -12.33693 -12.26878 -12.18610 -11.72959 -11.19583 -11.09576 -10.76311 -10.62080 -10.16643 -10.12880 -9.79848 -9.41460 -8.76897 -8.23880 -6.39180 -0.56603 0.25394 0.66142 0.77335 1.34669 1.38580 1.48787 1.56075 1.88017 2.35383 2.96857 3.03226 3.24786 3.59146 3.84519 3.89561 3.95656 4.11295 4.17635 4.33169 4.34681 4.38774 4.40048 4.47756 4.60630 4.68499 4.77357 4.83997 4.88394 5.06920 5.10848 5.20717 5.45778 5.54720 5.69261 5.83674 6.03067 6.22098 6.65600 6.71422 7.32425 7.47485 8.81880 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.014579 B = 0.004406 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.127995 B = 6353.630831 C = 7590.901373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.295 6.295 3 C 0.004 3.996 4 C -0.223 4.223 5 C 0.043 3.957 6 N -0.486 5.486 7 C 0.010 3.990 8 C 0.115 3.885 9 N -0.499 5.499 10 C 0.033 3.967 11 C -0.117 4.117 12 C 0.239 3.761 13 O -0.590 6.590 14 C -0.560 4.560 15 H 0.044 0.956 16 C 0.035 3.965 17 N -0.908 5.908 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.274 1.274 21 H -0.277 1.277 22 C 0.062 3.938 23 S 0.165 5.835 24 H 0.089 0.911 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.116 0.884 29 H 0.188 0.812 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.372 0.628 37 H 0.270 0.730 38 H 0.056 0.944 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.187 -15.330 2.467 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.069 6.069 3 C -0.146 4.146 4 C -0.345 4.345 5 C -0.112 4.112 6 N -0.202 5.202 7 C -0.269 4.269 8 C -0.017 4.017 9 N -0.221 5.221 10 C -0.095 4.095 11 C -0.156 4.156 12 C 0.199 3.801 13 O -0.397 6.397 14 C -0.599 4.599 15 H 0.063 0.937 16 C -0.166 4.166 17 N -0.547 5.547 18 Si 0.780 3.220 19 H -0.200 1.200 20 H -0.200 1.200 21 H -0.202 1.202 22 C -0.066 4.066 23 S 0.420 5.580 24 H 0.108 0.892 25 H 0.132 0.868 26 H 0.107 0.893 27 H 0.122 0.878 28 H 0.134 0.866 29 H 0.204 0.796 30 H 0.126 0.874 31 H 0.140 0.860 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.220 0.780 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.511 -16.562 3.102 19.349 hybrid contribution -2.632 2.319 -1.434 3.790 sum -12.143 -14.243 1.668 18.791 Atomic orbital electron populations 1.23485 0.90731 1.07716 1.06159 1.87368 1.10911 1.10383 1.98221 1.21624 0.90144 0.95304 1.07511 1.25470 1.00151 1.13023 0.95888 1.21989 0.86966 1.01189 1.01016 1.66358 1.18505 1.15766 1.19567 1.28278 1.03271 1.03411 0.91970 1.21485 0.86148 0.90873 1.03169 1.65132 1.51666 1.01308 1.04036 1.23089 0.96393 0.95220 0.94777 1.22676 0.99375 0.94451 0.99129 1.19605 0.80732 0.88679 0.91127 1.86146 1.32638 1.35510 1.85429 1.21802 1.28312 0.99571 1.10202 0.93736 1.25615 0.96913 0.98235 0.95868 1.69807 1.44709 1.15920 1.24254 0.85577 0.78942 0.78561 0.78960 1.19987 1.19958 1.20248 1.23107 0.98593 0.92620 0.92234 1.83713 0.98555 1.65088 1.10673 0.89202 0.86769 0.89344 0.87815 0.86584 0.79559 0.87373 0.86032 0.93153 0.89281 0.93982 0.92888 0.77977 0.92103 0.92565 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.76 113.37 1.22 -0.02 16 2 S -0.30 -5.72 22.36 -56.49 -1.26 -6.98 16 3 C 0.00 0.07 6.47 71.24 0.46 0.53 16 4 C -0.22 -5.79 5.86 24.64 0.14 -5.65 16 5 C 0.04 1.26 11.25 83.66 0.94 2.20 16 6 N -0.49 -16.53 9.21 -191.46 -1.76 -18.29 16 7 C 0.01 0.30 4.87 88.52 0.43 0.73 16 8 C 0.11 3.45 6.07 85.56 0.52 3.97 16 9 N -0.50 -19.02 5.54 -887.57 -4.91 -23.93 16 10 C 0.03 1.22 6.46 86.45 0.56 1.78 16 11 C -0.12 -5.46 5.26 31.47 0.17 -5.29 16 12 C 0.24 12.26 0.95 -10.34 -0.01 12.25 16 13 O -0.59 -32.17 13.09 -148.98 -1.95 -34.12 16 14 C -0.56 -31.14 8.15 25.60 0.21 -30.93 16 15 H 0.04 2.53 7.78 -2.91 -0.02 2.51 16 16 C 0.03 1.86 5.28 84.66 0.45 2.30 16 17 N -0.91 -48.84 11.00 21.45 0.24 -48.60 16 18 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 22 C 0.06 2.84 5.42 86.65 0.47 3.31 16 23 S 0.16 4.41 21.25 -56.49 -1.20 3.21 16 24 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.19 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.12 2.86 8.08 -2.39 -0.02 2.84 16 32 H 0.05 1.67 5.30 -2.39 -0.01 1.66 16 33 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 34 H 0.04 2.05 7.84 -2.39 -0.02 2.04 16 35 H 0.05 2.58 7.98 -2.39 -0.02 2.56 16 36 H 0.37 20.42 7.46 -74.05 -0.55 19.87 16 37 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 38 H 0.06 2.72 8.14 -2.38 -0.02 2.70 16 39 H 0.06 2.66 5.22 -2.39 -0.01 2.65 16 Total: -1.00 -63.44 341.25 -2.76 -66.20 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: 0.51 Total: 32.64 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.55 Total: -14.82 kcal Atomic # 7 Polarization: -84.38 SS G_CDS: -6.44 Total: -90.82 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.95 Total: -34.12 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.46 Total: -3.77 kcal Total: -63.44 -2.76 -66.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592526330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.128 kcal (2) G-P(sol) polarization free energy of solvation -63.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds