Wall clock time and date at job start Tue Mar 31 2020 10:41:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81392 * 1
3 3 C 1.81408 * 102.99966 * 2 1
4 4 C 1.50705 * 109.47023 * 180.02562 * 3 2 1
5 5 C 1.33638 * 126.03648 * 89.96159 * 4 3 2
6 6 N 1.31778 * 114.49589 * 179.79025 * 5 4 3
7 7 C 1.29026 * 117.13031 * 0.47007 * 6 5 4
8 8 C 1.50696 * 124.91910 * 179.81644 * 7 6 5
9 9 N 1.46900 * 109.47010 * 89.69609 * 8 7 6
10 10 C 1.47906 * 111.00463 * 69.87265 * 9 8 7
11 11 C 1.53996 * 107.06117 * 214.15679 * 10 9 8
12 12 C 1.54591 * 105.13656 * 1.22236 * 11 10 9
13 13 O 1.42902 * 110.72622 * 263.60022 * 12 11 10
14 14 C 1.50706 * 110.72503 * 140.49476 * 12 11 10
15 15 H 1.07995 * 119.99916 * 241.45455 * 14 12 11
16 16 C 1.37879 * 119.99423 * 61.44873 * 14 12 11
17 17 N 1.31515 * 120.00643 * 0.02562 * 16 14 12
18 18 Si 1.86801 * 119.99609 * 180.02562 * 16 14 12
19 19 H 1.48501 * 109.47188 * 0.02562 * 18 16 14
20 20 H 1.48501 * 109.47458 * 120.00267 * 18 16 14
21 21 H 1.48506 * 109.47329 * 240.00227 * 18 16 14
22 22 C 1.48534 * 111.00336 * 312.47554 * 9 8 7
23 23 S 1.70978 * 110.16095 * 359.54810 * 7 6 5
24 24 H 1.09002 * 109.47550 * 60.00023 * 1 2 3
25 25 H 1.09006 * 109.47298 * 180.02562 * 1 2 3
26 26 H 1.09001 * 109.47447 * 299.99626 * 1 2 3
27 27 H 1.08998 * 109.46685 * 59.99895 * 3 2 1
28 28 H 1.08993 * 109.46740 * 300.00086 * 3 2 1
29 29 H 1.07998 * 122.74916 * 0.02573 * 5 4 3
30 30 H 1.08993 * 109.47221 * 329.69619 * 8 7 6
31 31 H 1.08998 * 109.46962 * 209.69071 * 8 7 6
32 32 H 1.09003 * 109.91125 * 333.50977 * 10 9 8
33 33 H 1.08999 * 109.91852 * 94.80110 * 10 9 8
34 34 H 1.08993 * 110.30544 * 120.13627 * 11 10 9
35 35 H 1.08995 * 110.30651 * 242.21227 * 11 10 9
36 36 H 0.96706 * 113.99903 * 298.54500 * 13 12 11
37 37 H 0.96995 * 119.99871 * 179.97438 * 17 16 14
38 38 H 1.09004 * 110.66939 * 278.16097 * 22 9 8
39 39 H 1.09002 * 110.66619 * 41.28493 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 6 2.2220 1.7676 0.0000
4 6 3.7194 1.9374 -0.0006
5 6 4.5002 2.0254 -1.0816
6 7 5.7827 2.1754 -0.8185
7 6 6.1284 2.2095 0.4241
8 6 7.5416 2.3697 0.9223
9 7 7.8450 3.7980 1.0834
10 6 7.0907 4.3756 2.2170
11 6 6.7465 5.8278 1.8375
12 6 7.3226 6.0209 0.4160
13 8 8.6124 6.6337 0.4720
14 6 6.3831 6.8371 -0.4339
15 1 5.9544 6.4094 -1.3282
16 6 6.0708 8.1297 -0.0697
17 7 6.5931 8.6506 1.0191
18 14 4.9056 9.1411 -1.1227
19 1 4.4584 8.3309 -2.2842
20 1 3.7256 9.5387 -0.3135
21 1 5.6060 10.3576 -1.6075
22 6 7.4280 4.5694 -0.1154
23 16 4.7500 2.0541 1.4237
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3634 -1.0277 0.0005
26 1 -0.3634 0.5138 0.8900
27 1 1.8030 2.2371 0.8900
28 1 1.8030 2.2371 -0.8899
29 1 4.1115 1.9812 -2.0882
30 1 8.2325 1.9305 0.2027
31 1 7.6477 1.8652 1.8826
32 1 6.1749 3.8077 2.3813
33 1 7.7053 4.3627 3.1171
34 1 5.6661 5.9710 1.8305
35 1 7.2152 6.5222 2.5348
36 1 8.6121 7.5153 0.8696
37 1 6.3736 9.5601 1.2751
38 1 8.1826 4.5003 -0.8990
39 1 6.4611 4.2218 -0.4794
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592526330.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:41:07
Heat of formation + Delta-G solvation = -15.070132 kcal
Electronic energy + Delta-G solvation = -22130.881646 eV
Core-core repulsion = 18904.869210 eV
Total energy + Delta-G solvation = -3226.012436 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 314.086 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-41.18436 -39.78848 -36.80158 -34.18972 -33.97689 -32.09287 -29.89756 -29.83028
-28.85805 -27.08901 -25.75400 -24.40705 -22.13175 -21.45527 -20.30018 -19.12837
-19.03851 -17.43752 -17.05748 -17.01247 -16.55529 -16.34351 -15.69634 -15.53622
-15.12947 -15.03720 -14.90754 -14.71744 -14.29943 -14.04150 -13.82632 -13.73695
-13.46428 -13.25436 -13.03145 -12.85557 -12.61912 -12.44752 -12.33693 -12.26878
-12.18610 -11.72959 -11.19583 -11.09576 -10.76311 -10.62080 -10.16643 -10.12880
-9.79848 -9.41460 -8.76897 -8.23880 -6.39180 -0.56603 0.25394 0.66142
0.77335 1.34669 1.38580 1.48787 1.56075 1.88017 2.35383 2.96857
3.03226 3.24786 3.59146 3.84519 3.89561 3.95656 4.11295 4.17635
4.33169 4.34681 4.38774 4.40048 4.47756 4.60630 4.68499 4.77357
4.83997 4.88394 5.06920 5.10848 5.20717 5.45778 5.54720 5.69261
5.83674 6.03067 6.22098 6.65600 6.71422 7.32425 7.47485 8.81880
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.014579 B = 0.004406 C = 0.003688
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1920.127995 B = 6353.630831 C = 7590.901373
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 S -0.295 6.295
3 C 0.004 3.996
4 C -0.223 4.223
5 C 0.043 3.957
6 N -0.486 5.486
7 C 0.010 3.990
8 C 0.115 3.885
9 N -0.499 5.499
10 C 0.033 3.967
11 C -0.117 4.117
12 C 0.239 3.761
13 O -0.590 6.590
14 C -0.560 4.560
15 H 0.044 0.956
16 C 0.035 3.965
17 N -0.908 5.908
18 Si 0.954 3.046
19 H -0.275 1.275
20 H -0.274 1.274
21 H -0.277 1.277
22 C 0.062 3.938
23 S 0.165 5.835
24 H 0.089 0.911
25 H 0.114 0.886
26 H 0.088 0.912
27 H 0.103 0.897
28 H 0.116 0.884
29 H 0.188 0.812
30 H 0.108 0.892
31 H 0.122 0.878
32 H 0.050 0.950
33 H 0.089 0.911
34 H 0.041 0.959
35 H 0.052 0.948
36 H 0.372 0.628
37 H 0.270 0.730
38 H 0.056 0.944
39 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.187 -15.330 2.467 19.137
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.281 4.281
2 S -0.069 6.069
3 C -0.146 4.146
4 C -0.345 4.345
5 C -0.112 4.112
6 N -0.202 5.202
7 C -0.269 4.269
8 C -0.017 4.017
9 N -0.221 5.221
10 C -0.095 4.095
11 C -0.156 4.156
12 C 0.199 3.801
13 O -0.397 6.397
14 C -0.599 4.599
15 H 0.063 0.937
16 C -0.166 4.166
17 N -0.547 5.547
18 Si 0.780 3.220
19 H -0.200 1.200
20 H -0.200 1.200
21 H -0.202 1.202
22 C -0.066 4.066
23 S 0.420 5.580
24 H 0.108 0.892
25 H 0.132 0.868
26 H 0.107 0.893
27 H 0.122 0.878
28 H 0.134 0.866
29 H 0.204 0.796
30 H 0.126 0.874
31 H 0.140 0.860
32 H 0.068 0.932
33 H 0.107 0.893
34 H 0.060 0.940
35 H 0.071 0.929
36 H 0.220 0.780
37 H 0.079 0.921
38 H 0.074 0.926
39 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -9.511 -16.562 3.102 19.349
hybrid contribution -2.632 2.319 -1.434 3.790
sum -12.143 -14.243 1.668 18.791
Atomic orbital electron populations
1.23485 0.90731 1.07716 1.06159 1.87368 1.10911 1.10383 1.98221
1.21624 0.90144 0.95304 1.07511 1.25470 1.00151 1.13023 0.95888
1.21989 0.86966 1.01189 1.01016 1.66358 1.18505 1.15766 1.19567
1.28278 1.03271 1.03411 0.91970 1.21485 0.86148 0.90873 1.03169
1.65132 1.51666 1.01308 1.04036 1.23089 0.96393 0.95220 0.94777
1.22676 0.99375 0.94451 0.99129 1.19605 0.80732 0.88679 0.91127
1.86146 1.32638 1.35510 1.85429 1.21802 1.28312 0.99571 1.10202
0.93736 1.25615 0.96913 0.98235 0.95868 1.69807 1.44709 1.15920
1.24254 0.85577 0.78942 0.78561 0.78960 1.19987 1.19958 1.20248
1.23107 0.98593 0.92620 0.92234 1.83713 0.98555 1.65088 1.10673
0.89202 0.86769 0.89344 0.87815 0.86584 0.79559 0.87373 0.86032
0.93153 0.89281 0.93982 0.92888 0.77977 0.92103 0.92565 0.92446
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.24 10.76 113.37 1.22 -0.02 16
2 S -0.30 -5.72 22.36 -56.49 -1.26 -6.98 16
3 C 0.00 0.07 6.47 71.24 0.46 0.53 16
4 C -0.22 -5.79 5.86 24.64 0.14 -5.65 16
5 C 0.04 1.26 11.25 83.66 0.94 2.20 16
6 N -0.49 -16.53 9.21 -191.46 -1.76 -18.29 16
7 C 0.01 0.30 4.87 88.52 0.43 0.73 16
8 C 0.11 3.45 6.07 85.56 0.52 3.97 16
9 N -0.50 -19.02 5.54 -887.57 -4.91 -23.93 16
10 C 0.03 1.22 6.46 86.45 0.56 1.78 16
11 C -0.12 -5.46 5.26 31.47 0.17 -5.29 16
12 C 0.24 12.26 0.95 -10.34 -0.01 12.25 16
13 O -0.59 -32.17 13.09 -148.98 -1.95 -34.12 16
14 C -0.56 -31.14 8.15 25.60 0.21 -30.93 16
15 H 0.04 2.53 7.78 -2.91 -0.02 2.51 16
16 C 0.03 1.86 5.28 84.66 0.45 2.30 16
17 N -0.91 -48.84 11.00 21.45 0.24 -48.60 16
18 Si 0.95 42.67 29.54 68.60 2.03 44.70 16
19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16
20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16
21 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16
22 C 0.06 2.84 5.42 86.65 0.47 3.31 16
23 S 0.16 4.41 21.25 -56.49 -1.20 3.21 16
24 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16
25 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16
26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16
27 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16
28 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16
29 H 0.19 4.65 8.06 -2.91 -0.02 4.63 16
30 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16
31 H 0.12 2.86 8.08 -2.39 -0.02 2.84 16
32 H 0.05 1.67 5.30 -2.39 -0.01 1.66 16
33 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16
34 H 0.04 2.05 7.84 -2.39 -0.02 2.04 16
35 H 0.05 2.58 7.98 -2.39 -0.02 2.56 16
36 H 0.37 20.42 7.46 -74.05 -0.55 19.87 16
37 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16
38 H 0.06 2.72 8.14 -2.38 -0.02 2.70 16
39 H 0.06 2.66 5.22 -2.39 -0.01 2.65 16
Total: -1.00 -63.44 341.25 -2.76 -66.20
By element:
Atomic # 1 Polarization: 32.12 SS G_CDS: 0.51 Total: 32.64 kcal
Atomic # 6 Polarization: -20.37 SS G_CDS: 5.55 Total: -14.82 kcal
Atomic # 7 Polarization: -84.38 SS G_CDS: -6.44 Total: -90.82 kcal
Atomic # 8 Polarization: -32.17 SS G_CDS: -1.95 Total: -34.12 kcal
Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal
Atomic # 16 Polarization: -1.30 SS G_CDS: -2.46 Total: -3.77 kcal
Total: -63.44 -2.76 -66.20 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592526330.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.128 kcal
(2) G-P(sol) polarization free energy of solvation -63.439 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.311 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.070 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds